Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46915 * 131.06225 * 3 2 1 5 5 N 1.46499 * 109.46790 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00388 * 72.34706 * 5 4 3 7 7 C 1.50696 * 109.47363 * 89.99565 * 6 5 4 8 8 H 1.08001 * 120.00074 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00290 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99964 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99864 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46948 * 90.00425 * 11 9 7 13 13 H 1.48499 * 109.47199 * 210.00249 * 11 9 7 14 14 H 1.48496 * 109.47168 * 330.00570 * 11 9 7 15 15 C 1.34779 * 120.00109 * 252.34427 * 5 4 3 16 16 O 1.21587 * 120.00180 * 181.72020 * 15 5 4 17 17 C 1.47534 * 119.99672 * 1.71497 * 15 5 4 18 18 C 1.39723 * 120.18284 * 26.59960 * 17 15 5 19 19 C 1.37981 * 119.88299 * 179.81283 * 18 17 15 20 20 F 1.35106 * 119.87715 * 180.21525 * 19 18 17 21 21 C 1.38730 * 120.25111 * 0.44313 * 19 18 17 22 22 C 1.38053 * 120.36288 * 359.79039 * 21 19 18 23 23 C 1.38688 * 120.11375 * 359.97438 * 22 21 19 24 24 O 1.35702 * 120.12374 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47308 * 11.05908 * 3 2 1 26 26 H 1.09005 * 109.46972 * 251.06251 * 3 2 1 27 27 H 1.08997 * 109.46924 * 59.99828 * 4 3 2 28 28 H 1.09000 * 109.46852 * 299.99713 * 4 3 2 29 29 H 1.08997 * 109.47601 * 209.99778 * 6 5 4 30 30 H 1.09001 * 109.46849 * 329.99755 * 6 5 4 31 31 H 0.97000 * 119.99600 * 179.97438 * 10 9 7 32 32 H 1.08003 * 120.05408 * 0.02562 * 18 17 15 33 33 H 1.07992 * 119.82228 * 179.76600 * 21 19 18 34 34 H 1.08004 * 119.94572 * 179.97438 * 22 21 19 35 35 H 0.96697 * 113.99533 * 270.02278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9485 -1.0877 5 7 4.5825 0.9496 -1.0872 6 6 5.3161 -0.2142 -1.5909 7 6 5.5676 -0.0491 -3.0675 8 1 5.2164 0.8346 -3.5796 9 6 6.2459 -1.0261 -3.7649 10 7 6.4657 -0.8817 -5.0535 11 14 6.8539 -2.5542 -2.8791 12 1 5.8029 -3.6024 -2.9223 13 1 8.0820 -3.0570 -3.5455 14 1 7.1600 -2.2181 -1.4654 15 6 5.2555 2.0213 -0.6235 16 8 6.4710 2.0350 -0.6521 17 6 4.5173 3.1779 -0.0814 18 6 3.2452 3.0037 0.4697 19 6 2.5618 4.0890 0.9785 20 9 1.3336 3.9197 1.5153 21 6 3.1292 5.3543 0.9367 22 6 4.3834 5.5390 0.3901 23 6 5.0857 4.4579 -0.1212 24 8 6.3183 4.6392 -0.6589 25 1 2.9718 -1.0078 -0.1971 26 1 2.9712 0.3344 0.9721 27 1 2.7537 1.9568 -0.8905 28 1 2.7544 0.6147 -2.0597 29 1 6.2685 -0.2980 -1.0673 30 1 4.7277 -1.1159 -1.4211 31 1 6.9433 -1.5689 -5.5440 32 1 2.7990 2.0206 0.5005 33 1 2.5867 6.1996 1.3335 34 1 4.8186 6.5271 0.3607 35 1 6.3097 4.8292 -1.6070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094037384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = -30.975704 kcal Electronic energy + Delta-G solvation = -23154.513976 eV Core-core repulsion = 19455.295498 eV Total energy + Delta-G solvation = -3699.218479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.05004 -40.63089 -38.51021 -37.18036 -36.50129 -35.38765 -33.05221 -31.66827 -31.08119 -29.44076 -28.03328 -24.68785 -23.90509 -23.03201 -21.94489 -19.52816 -18.42945 -17.98450 -17.31636 -17.11305 -16.83506 -16.43395 -15.78905 -15.55816 -15.25708 -15.09944 -14.49554 -14.12464 -14.01290 -13.71432 -13.58689 -13.21059 -13.00314 -12.72459 -12.46229 -12.35433 -11.99953 -11.91530 -11.78409 -11.58088 -11.08724 -10.96812 -10.67650 -10.62784 -10.21184 -9.66406 -9.37714 -9.10274 -8.67014 -8.65420 -7.99043 -6.16393 -4.16412 0.61465 0.85037 2.63396 2.73210 2.90010 3.21130 3.28221 3.32667 3.38767 3.61040 3.92378 4.06646 4.13189 4.32438 4.43897 4.57005 4.79771 4.88147 4.93540 5.03649 5.15909 5.27522 5.44955 5.60029 5.64288 5.71156 5.82369 5.98244 6.01639 6.45376 6.50369 6.82768 7.07683 7.48711 7.49856 7.65847 7.94060 8.35762 8.70433 8.86661 9.42725 10.96733 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.005897 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.729616 B = 4746.860353 C = 6224.117488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.211 3.789 3 C -0.058 4.058 4 C 0.082 3.918 5 N -0.584 5.584 6 C 0.215 3.785 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.074 3.926 10 N -0.895 5.895 11 Si 0.872 3.128 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.262 1.262 15 C 0.550 3.450 16 O -0.501 6.501 17 C -0.123 4.123 18 C -0.139 4.139 19 C 0.078 3.922 20 F -0.137 7.137 21 C -0.120 4.120 22 C -0.126 4.126 23 C 0.156 3.844 24 O -0.474 6.474 25 H 0.125 0.875 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.030 0.970 31 H 0.265 0.735 32 H 0.165 0.835 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.740 9.740 11.548 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.108 4.108 3 C -0.099 4.099 4 C -0.043 4.043 5 N -0.315 5.315 6 C 0.095 3.905 7 C -0.571 4.571 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.699 3.301 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.187 1.187 15 C 0.336 3.664 16 O -0.376 6.376 17 C -0.127 4.127 18 C -0.157 4.157 19 C 0.059 3.941 20 F -0.115 7.115 21 C -0.139 4.139 22 C -0.145 4.145 23 C 0.109 3.891 24 O -0.285 6.285 25 H 0.143 0.857 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.182 0.818 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.500 9.513 11.929 17.001 hybrid contribution 0.335 -0.839 -0.174 0.920 sum -7.165 8.674 11.755 16.271 Atomic orbital electron populations 1.81223 1.12803 1.08505 1.08415 1.28945 0.94963 0.93453 0.93394 1.19899 0.81839 1.05378 1.02767 1.22203 0.82316 1.00541 0.99273 1.47764 1.04829 1.17835 1.61066 1.19773 0.92545 0.82143 0.96071 1.21262 1.37381 1.07198 0.91218 0.90626 1.24845 0.95134 0.98169 0.94702 1.69886 1.41148 1.34805 1.07414 0.86906 0.79061 0.83432 0.80725 1.20032 1.20896 1.18674 1.17816 0.87299 0.82066 0.79190 1.90845 1.12600 1.79480 1.54650 1.20514 0.94148 0.95423 1.02607 1.22106 0.94276 1.00504 0.98860 1.17533 0.82095 0.94441 1.00031 1.91529 1.39980 1.96247 1.83789 1.21139 0.96041 0.96105 1.00648 1.21287 0.93705 0.99333 1.00169 1.18479 0.84719 0.90361 0.95516 1.84812 1.22669 1.92780 1.28221 0.85733 0.87032 0.87695 0.88722 0.93545 0.95192 0.92455 0.81781 0.84102 0.83797 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.34 18.54 42.16 0.78 -5.56 16 2 C 0.21 2.55 15.31 -20.76 -0.32 2.23 16 3 C -0.06 -0.60 4.97 -29.52 -0.15 -0.75 16 4 C 0.08 1.09 4.86 -4.04 -0.02 1.07 16 5 N -0.58 -10.34 2.51 -176.29 -0.44 -10.79 16 6 C 0.21 4.61 4.14 -5.20 -0.02 4.59 16 7 C -0.53 -14.06 9.94 -34.44 -0.34 -14.40 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 11 Si 0.87 20.14 27.47 -169.99 -4.67 15.47 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 15 C 0.55 10.18 7.40 -12.47 -0.09 10.09 16 16 O -0.50 -11.41 15.23 -14.57 -0.22 -11.63 16 17 C -0.12 -1.78 5.58 -104.85 -0.58 -2.37 16 18 C -0.14 -1.67 7.43 -39.12 -0.29 -1.97 16 19 C 0.08 0.88 7.28 -39.49 -0.29 0.59 16 20 F -0.14 -1.61 17.26 2.25 0.04 -1.57 16 21 C -0.12 -1.14 10.01 -39.47 -0.39 -1.53 16 22 C -0.13 -1.26 9.97 -39.48 -0.39 -1.65 16 23 C 0.16 2.06 6.69 -38.71 -0.26 1.81 16 24 O -0.47 -6.70 11.92 -38.67 -0.46 -7.16 16 25 H 0.12 1.22 7.26 -51.93 -0.38 0.84 16 26 H 0.11 0.95 7.11 -51.93 -0.37 0.58 16 27 H 0.11 1.26 3.84 -53.48 -0.21 1.06 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.05 1.09 6.50 -51.93 -0.34 0.75 16 30 H 0.03 0.58 6.57 -51.93 -0.34 0.24 16 31 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.17 1.79 2.77 -52.48 -0.15 1.65 16 33 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.40 4.14 9.06 45.56 0.41 4.56 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -34.30 310.44 -4.99 -39.29 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.22 Total: 3.17 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -3.25 Total: -0.36 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 1.11 Total: -41.90 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.68 Total: -18.79 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.30 -4.99 -39.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094037384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.318 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds