Wall clock time and date at job start Tue Mar 31 2020 06:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46915 * 131.06225 * 3 2 1 5 5 N 1.46499 * 109.46790 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00388 * 72.34706 * 5 4 3 7 7 C 1.50696 * 109.47363 * 89.99565 * 6 5 4 8 8 H 1.08001 * 120.00074 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00290 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99964 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99864 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46948 * 90.00425 * 11 9 7 13 13 H 1.48499 * 109.47199 * 210.00249 * 11 9 7 14 14 H 1.48496 * 109.47168 * 330.00570 * 11 9 7 15 15 C 1.34779 * 120.00109 * 252.34427 * 5 4 3 16 16 O 1.21587 * 120.00180 * 181.72020 * 15 5 4 17 17 C 1.47534 * 119.99672 * 1.71497 * 15 5 4 18 18 C 1.39723 * 120.18284 * 26.59960 * 17 15 5 19 19 C 1.37981 * 119.88299 * 179.81283 * 18 17 15 20 20 F 1.35106 * 119.87715 * 180.21525 * 19 18 17 21 21 C 1.38730 * 120.25111 * 0.44313 * 19 18 17 22 22 C 1.38053 * 120.36288 * 359.79039 * 21 19 18 23 23 C 1.38688 * 120.11375 * 359.97438 * 22 21 19 24 24 O 1.35702 * 120.12374 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47308 * 11.05908 * 3 2 1 26 26 H 1.09005 * 109.46972 * 251.06251 * 3 2 1 27 27 H 1.08997 * 109.46924 * 59.99828 * 4 3 2 28 28 H 1.09000 * 109.46852 * 299.99713 * 4 3 2 29 29 H 1.08997 * 109.47601 * 209.99778 * 6 5 4 30 30 H 1.09001 * 109.46849 * 329.99755 * 6 5 4 31 31 H 0.97000 * 119.99600 * 179.97438 * 10 9 7 32 32 H 1.08003 * 120.05408 * 0.02562 * 18 17 15 33 33 H 1.07992 * 119.82228 * 179.76600 * 21 19 18 34 34 H 1.08004 * 119.94572 * 179.97438 * 22 21 19 35 35 H 0.96697 * 113.99533 * 270.02278 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 0.9485 -1.0877 5 7 4.5825 0.9496 -1.0872 6 6 5.3161 -0.2142 -1.5909 7 6 5.5676 -0.0491 -3.0675 8 1 5.2164 0.8346 -3.5796 9 6 6.2459 -1.0261 -3.7649 10 7 6.4657 -0.8817 -5.0535 11 14 6.8539 -2.5542 -2.8791 12 1 5.8029 -3.6024 -2.9223 13 1 8.0820 -3.0570 -3.5455 14 1 7.1600 -2.2181 -1.4654 15 6 5.2555 2.0213 -0.6235 16 8 6.4710 2.0350 -0.6521 17 6 4.5173 3.1779 -0.0814 18 6 3.2452 3.0037 0.4697 19 6 2.5618 4.0890 0.9785 20 9 1.3336 3.9197 1.5153 21 6 3.1292 5.3543 0.9367 22 6 4.3834 5.5390 0.3901 23 6 5.0857 4.4579 -0.1212 24 8 6.3183 4.6392 -0.6589 25 1 2.9718 -1.0078 -0.1971 26 1 2.9712 0.3344 0.9721 27 1 2.7537 1.9568 -0.8905 28 1 2.7544 0.6147 -2.0597 29 1 6.2685 -0.2980 -1.0673 30 1 4.7277 -1.1159 -1.4211 31 1 6.9433 -1.5689 -5.5440 32 1 2.7990 2.0206 0.5005 33 1 2.5867 6.1996 1.3335 34 1 4.8186 6.5271 0.3607 35 1 6.3097 4.8292 -1.6070 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094037384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:46 Heat of formation + Delta-G solvation = -54.670348 kcal Electronic energy + Delta-G solvation = -23155.541453 eV Core-core repulsion = 19455.295498 eV Total energy + Delta-G solvation = -3700.245955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.93894 -41.79387 -39.67814 -38.35528 -37.50724 -36.71411 -34.90105 -33.01167 -32.18774 -30.44707 -29.67688 -25.79812 -25.35886 -24.07106 -23.27150 -20.80783 -19.45139 -19.24975 -18.78885 -18.24767 -18.16177 -17.41375 -16.95660 -16.66957 -16.51025 -16.17681 -15.96585 -15.54688 -15.11948 -14.81910 -14.62973 -14.57740 -14.27101 -13.96530 -13.74472 -13.52206 -13.40982 -13.14264 -12.91929 -12.84262 -12.58106 -12.30430 -12.05617 -11.88510 -11.75006 -11.68806 -10.75795 -10.71852 -10.13989 -9.65671 -9.46233 -8.27311 -6.32190 -0.35409 -0.03839 1.39080 1.44025 1.53482 1.60982 1.76417 1.76961 2.10772 2.37649 2.48825 2.92327 3.08863 3.12068 3.19134 3.49633 3.63412 3.88275 3.91839 3.98211 4.13832 4.37070 4.50993 4.67447 4.72722 4.79230 4.85539 4.93773 5.00467 5.04848 5.19751 5.49832 5.55004 5.62679 6.27917 6.51323 6.54234 6.70375 6.74897 7.22680 7.35972 8.89484 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.005897 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.729616 B = 4746.860353 C = 6224.117488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.238 3.762 3 C -0.049 4.049 4 C 0.079 3.921 5 N -0.585 5.585 6 C 0.221 3.779 7 C -0.534 4.534 8 H 0.030 0.970 9 C 0.011 3.989 10 N -0.948 5.948 11 Si 0.942 3.058 12 H -0.251 1.251 13 H -0.290 1.290 14 H -0.246 1.246 15 C 0.547 3.453 16 O -0.557 6.557 17 C -0.147 4.147 18 C -0.134 4.134 19 C 0.074 3.926 20 F -0.138 7.138 21 C -0.100 4.100 22 C -0.114 4.114 23 C 0.142 3.858 24 O -0.495 6.495 25 H 0.140 0.860 26 H 0.140 0.860 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.266 0.734 32 H 0.173 0.827 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 10.086 14.059 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.080 4.080 3 C -0.089 4.089 4 C -0.045 4.045 5 N -0.315 5.315 6 C 0.100 3.900 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.187 4.187 10 N -0.588 5.588 11 Si 0.765 3.235 12 H -0.175 1.175 13 H -0.216 1.216 14 H -0.169 1.169 15 C 0.336 3.664 16 O -0.436 6.436 17 C -0.151 4.151 18 C -0.152 4.152 19 C 0.054 3.946 20 F -0.117 7.117 21 C -0.118 4.118 22 C -0.132 4.132 23 C 0.095 3.905 24 O -0.308 6.308 25 H 0.158 0.842 26 H 0.158 0.842 27 H 0.138 0.862 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.190 0.810 33 H 0.195 0.805 34 H 0.193 0.807 35 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -8.889 9.871 14.458 19.634 hybrid contribution 0.706 -0.771 -0.996 1.444 sum -8.183 9.100 13.462 18.194 Atomic orbital electron populations 1.81263 1.14115 1.09967 1.09903 1.29005 0.94851 0.92099 0.92012 1.19902 0.80629 1.05453 1.02955 1.22378 0.79656 1.02397 1.00040 1.47706 1.06484 1.16888 1.60437 1.19497 0.93162 0.84908 0.92479 1.21552 1.36533 1.05322 0.93808 0.95193 1.25828 0.95398 1.02094 0.95355 1.70059 1.42877 1.36381 1.09504 0.85789 0.78606 0.79199 0.79898 1.17541 1.21628 1.16922 1.18432 0.86948 0.82795 0.78240 1.90800 1.15033 1.80589 1.57166 1.20203 0.95320 0.94370 1.05242 1.22043 0.93218 1.01458 0.98501 1.17623 0.82020 0.94868 1.00047 1.91536 1.40020 1.96303 1.83791 1.21543 0.95477 0.96432 0.98386 1.21532 0.93460 0.99552 0.98637 1.18834 0.84679 0.90952 0.96017 1.84767 1.23829 1.92930 1.29269 0.84208 0.84249 0.86222 0.89809 0.95198 0.91706 0.92492 0.80981 0.80529 0.80743 0.73326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.13 18.54 20.01 0.37 -12.76 16 2 C 0.24 5.20 15.31 89.44 1.37 6.57 16 3 C -0.05 -0.88 4.97 28.79 0.14 -0.74 16 4 C 0.08 2.01 4.86 86.38 0.42 2.43 16 5 N -0.59 -20.64 2.51 -829.93 -2.08 -22.73 16 6 C 0.22 9.43 4.14 85.63 0.35 9.78 16 7 C -0.53 -29.08 9.94 25.60 0.25 -28.82 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.01 0.62 5.47 84.65 0.46 1.08 16 10 N -0.95 -57.87 13.96 21.45 0.30 -57.57 16 11 Si 0.94 41.41 27.47 68.60 1.88 43.30 16 12 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 13 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.25 -10.07 6.54 99.48 0.65 -9.42 16 15 C 0.55 20.55 7.40 86.69 0.64 21.20 16 16 O -0.56 -26.33 15.23 15.00 0.23 -26.11 16 17 C -0.15 -4.18 5.58 -20.01 -0.11 -4.29 16 18 C -0.13 -2.94 7.43 22.57 0.17 -2.78 16 19 C 0.07 1.41 7.28 22.33 0.16 1.57 16 20 F -0.14 -2.78 17.26 44.97 0.78 -2.01 16 21 C -0.10 -1.48 10.01 22.34 0.22 -1.25 16 22 C -0.11 -1.90 9.97 22.33 0.22 -1.68 16 23 C 0.14 3.60 6.69 22.83 0.15 3.76 16 24 O -0.50 -14.16 11.92 -71.23 -0.85 -15.01 16 25 H 0.14 2.23 7.26 -2.39 -0.02 2.21 16 26 H 0.14 1.86 7.11 -2.38 -0.02 1.84 16 27 H 0.12 2.72 3.84 -3.85 -0.01 2.70 16 28 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.03 1.40 6.50 -2.39 -0.02 1.38 16 30 H 0.07 2.33 6.57 -2.39 -0.02 2.32 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.17 3.34 2.77 -2.91 -0.01 3.33 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 34 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.41 8.93 9.06 -74.06 -0.67 8.25 16 Total: -1.00 -78.82 310.44 5.54 -73.28 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.44 Total: 12.77 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 4.46 Total: 6.83 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -1.41 Total: -93.06 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.62 Total: -41.12 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.88 Total: 43.30 kcal Total: -78.82 5.54 -73.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094037384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.613 kcal (2) G-P(sol) polarization free energy of solvation -78.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds