Wall clock time and date at job start Tue Mar 31 2020 06:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46898 * 110.99921 * 176.04401 * 12 2 1 14 14 C 1.46893 * 111.00255 * 299.99972 * 12 2 1 15 15 N 1.46501 * 109.47376 * 170.00081 * 14 12 2 16 16 C 1.39416 * 126.24547 * 269.71284 * 15 14 12 17 17 C 1.38617 * 133.34157 * 0.71909 * 16 15 14 18 18 C 1.38144 * 119.82052 * 179.59342 * 17 16 15 19 19 C 1.38403 * 120.19137 * 359.70928 * 18 17 16 20 20 C 1.38139 * 120.30835 * 0.02562 * 19 18 17 21 21 C 1.38614 * 119.91897 * 359.97438 * 20 19 18 22 22 O 1.35541 * 132.98692 * 179.97438 * 21 20 19 23 23 C 1.34334 * 109.15439 * 180.02562 * 22 21 20 24 24 S 1.71198 * 125.28878 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47309 * 60.00232 * 13 12 2 30 30 H 1.08998 * 109.47470 * 180.02562 * 13 12 2 31 31 H 1.09007 * 109.47247 * 300.00280 * 13 12 2 32 32 H 1.09001 * 109.46860 * 290.00089 * 14 12 2 33 33 H 1.09006 * 109.47455 * 49.99667 * 14 12 2 34 34 H 1.07996 * 120.09181 * 359.29824 * 17 16 15 35 35 H 1.08001 * 119.90070 * 179.72697 * 18 17 16 36 36 H 1.07996 * 119.84557 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.03528 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5488 -0.0265 2.4210 15 7 1.8495 -0.8671 3.5826 16 6 1.0185 -1.8430 4.1311 17 6 -0.2404 -2.3176 3.7975 18 6 -0.8158 -3.3249 4.5477 19 6 -0.1364 -3.8643 5.6261 20 6 1.1208 -3.4001 5.9611 21 6 1.7063 -2.3897 5.2143 22 8 2.8965 -1.7472 5.3015 23 6 2.9774 -0.8340 4.3195 24 16 4.3066 0.2100 4.0469 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 3.9188 0.2051 1.1591 30 1 3.8210 -1.3117 2.0857 31 1 3.8030 -1.3532 0.3065 32 1 2.0520 0.9345 2.5280 33 1 0.4723 0.1324 2.3564 34 1 -0.7720 -1.8979 2.9564 35 1 -1.7984 -3.6927 4.2917 36 1 -0.5913 -4.6519 6.2085 37 1 1.6471 -3.8245 6.8033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103461150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:16 Heat of formation + Delta-G solvation = 65.987678 kcal Electronic energy + Delta-G solvation = -21359.616939 eV Core-core repulsion = 18230.816284 eV Total energy + Delta-G solvation = -3128.800655 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.51668 -38.37533 -37.97516 -35.58673 -32.74075 -31.02526 -30.51156 -29.24385 -27.92024 -25.16908 -24.48841 -23.87659 -23.44076 -21.70119 -19.82450 -18.75544 -18.24471 -17.37405 -17.23935 -16.44956 -15.49656 -15.15306 -15.02616 -14.63296 -14.33115 -14.27484 -13.97095 -13.00471 -12.90226 -12.66714 -12.57600 -12.14808 -11.99041 -11.61524 -11.51948 -11.34121 -11.10870 -10.94415 -10.72319 -10.34880 -10.32941 -10.06129 -9.53986 -9.12397 -9.07470 -8.56294 -7.83571 -7.69333 -7.34112 -6.13987 -4.18827 0.35871 0.81104 1.27059 1.39974 2.23311 2.77936 3.23600 3.23920 3.32303 3.36906 4.03413 4.30690 4.37519 4.53964 4.74793 4.84148 4.85206 4.94277 5.18772 5.26641 5.46636 5.62674 5.68019 5.87760 6.01043 6.07530 6.14046 6.29464 6.43593 6.53566 6.71896 6.77744 6.78973 6.92423 7.25580 7.41270 7.68226 7.89900 8.09206 8.32476 8.86106 9.46781 10.92984 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.004951 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.064181 B = 5654.617041 C = 6536.621480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.546 5.546 13 C 0.036 3.964 14 C 0.271 3.729 15 N -0.459 5.459 16 C 0.067 3.933 17 C -0.077 4.077 18 C -0.098 4.098 19 C -0.101 4.101 20 C -0.081 4.081 21 C 0.022 3.978 22 O -0.181 6.181 23 C 0.445 3.555 24 S -0.492 6.492 25 H 0.005 0.995 26 H 0.092 0.908 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 -7.882 15.340 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.113 3.887 3 H 0.026 0.974 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.273 5.273 13 C -0.112 4.112 14 C 0.062 3.938 15 N -0.161 5.161 16 C -0.034 4.034 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.029 4.029 22 O -0.079 6.079 23 C 0.152 3.848 24 S -0.357 6.357 25 H 0.024 0.976 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.430 -7.448 14.981 17.589 hybrid contribution -0.009 -0.140 -0.827 0.838 sum -5.438 -7.587 14.154 16.955 Atomic orbital electron populations 1.21944 0.97574 0.99856 1.00187 1.19298 0.92252 0.92500 0.84697 0.97375 1.21082 1.31388 1.12523 0.89283 0.91652 1.24905 0.95032 0.95021 0.99071 1.69874 1.36729 1.22848 1.23629 0.86412 0.78621 0.79637 0.82614 1.19711 1.20968 1.20968 1.62221 1.11468 1.52358 1.01216 1.22456 0.86696 1.00791 1.01236 1.22649 1.02203 0.89303 0.79679 1.46450 1.12571 1.30959 1.26076 1.18967 0.95448 0.93708 0.95324 1.20343 0.91614 0.97185 1.00688 1.21112 1.00541 0.95445 0.94670 1.21034 0.93335 1.00091 0.97639 1.20043 0.95501 0.94553 0.99941 1.19576 0.85261 0.99174 0.98927 1.85240 1.33895 1.42853 1.45917 1.26434 0.90881 0.86954 0.80568 1.93491 1.24479 1.37839 1.79892 0.97575 0.88960 0.94356 0.92828 0.94833 0.93805 0.90570 0.89958 0.86900 0.83842 0.83958 0.83870 0.83996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.76 37.16 0.33 -2.68 16 2 C 0.22 5.15 2.06 -68.86 -0.14 5.01 16 3 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 4 C -0.50 -13.23 7.93 -34.44 -0.27 -13.50 16 5 H 0.07 1.75 6.39 -52.48 -0.34 1.41 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.55 -11.30 4.76 -240.19 -1.14 -12.44 16 13 C 0.04 0.77 8.01 60.06 0.48 1.25 16 14 C 0.27 4.74 5.46 -63.32 -0.35 4.39 16 15 N -0.46 -7.50 2.76 -118.80 -0.33 -7.83 16 16 C 0.07 0.93 6.84 -83.81 -0.57 0.35 16 17 C -0.08 -0.85 10.03 -39.48 -0.40 -1.25 16 18 C -0.10 -0.78 10.04 -39.56 -0.40 -1.18 16 19 C -0.10 -0.72 10.03 -39.56 -0.40 -1.12 16 20 C -0.08 -0.73 10.06 -39.48 -0.40 -1.13 16 21 C 0.02 0.28 7.35 -38.98 -0.29 -0.01 16 22 O -0.18 -2.84 10.73 2.07 0.02 -2.82 16 23 C 0.44 7.76 6.99 54.06 0.38 8.14 16 24 S -0.49 -9.73 27.91 -107.50 -3.00 -12.73 16 25 H 0.01 0.10 6.20 -51.93 -0.32 -0.22 16 26 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.03 0.73 8.01 -51.93 -0.42 0.32 16 30 H 0.04 0.90 5.31 -51.93 -0.28 0.62 16 31 H 0.08 1.69 6.23 -51.92 -0.32 1.37 16 32 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 33 H 0.11 1.79 5.83 -51.93 -0.30 1.49 16 34 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.52 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -29.92 315.68 -10.56 -40.48 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.36 Total: -1.35 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.12 Total: -0.19 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.84 Total: -43.93 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.02 Total: -2.82 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -9.73 SS G_CDS: -3.00 Total: -12.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.92 -10.56 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103461150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.464 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds