Wall clock time and date at job start Tue Mar 31 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46898 * 110.99921 * 176.04401 * 12 2 1 14 14 C 1.46893 * 111.00255 * 299.99972 * 12 2 1 15 15 N 1.46501 * 109.47376 * 170.00081 * 14 12 2 16 16 C 1.39416 * 126.24547 * 269.71284 * 15 14 12 17 17 C 1.38617 * 133.34157 * 0.71909 * 16 15 14 18 18 C 1.38144 * 119.82052 * 179.59342 * 17 16 15 19 19 C 1.38403 * 120.19137 * 359.70928 * 18 17 16 20 20 C 1.38139 * 120.30835 * 0.02562 * 19 18 17 21 21 C 1.38614 * 119.91897 * 359.97438 * 20 19 18 22 22 O 1.35541 * 132.98692 * 179.97438 * 21 20 19 23 23 C 1.34334 * 109.15439 * 180.02562 * 22 21 20 24 24 S 1.71198 * 125.28878 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 26 26 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 27 27 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 28 28 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47309 * 60.00232 * 13 12 2 30 30 H 1.08998 * 109.47470 * 180.02562 * 13 12 2 31 31 H 1.09007 * 109.47247 * 300.00280 * 13 12 2 32 32 H 1.09001 * 109.46860 * 290.00089 * 14 12 2 33 33 H 1.09006 * 109.47455 * 49.99667 * 14 12 2 34 34 H 1.07996 * 120.09181 * 359.29824 * 17 16 15 35 35 H 1.08001 * 119.90070 * 179.72697 * 18 17 16 36 36 H 1.07996 * 119.84557 * 180.02562 * 19 18 17 37 37 H 1.08003 * 120.03528 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5488 -0.0265 2.4210 15 7 1.8495 -0.8671 3.5826 16 6 1.0185 -1.8430 4.1311 17 6 -0.2404 -2.3176 3.7975 18 6 -0.8158 -3.3249 4.5477 19 6 -0.1364 -3.8643 5.6261 20 6 1.1208 -3.4001 5.9611 21 6 1.7063 -2.3897 5.2143 22 8 2.8965 -1.7472 5.3015 23 6 2.9774 -0.8340 4.3195 24 16 4.3066 0.2100 4.0469 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1618 -3.4844 29 1 3.9188 0.2051 1.1591 30 1 3.8210 -1.3117 2.0857 31 1 3.8030 -1.3532 0.3065 32 1 2.0520 0.9345 2.5280 33 1 0.4723 0.1324 2.3564 34 1 -0.7720 -1.8979 2.9564 35 1 -1.7984 -3.6927 4.2917 36 1 -0.5913 -4.6519 6.2085 37 1 1.6471 -3.8245 6.8033 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103461150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:15 Heat of formation + Delta-G solvation = 47.678729 kcal Electronic energy + Delta-G solvation = -21360.410874 eV Core-core repulsion = 18230.816284 eV Total energy + Delta-G solvation = -3129.594590 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.68043 -39.55217 -39.20194 -37.06960 -34.63920 -31.86184 -31.59816 -30.93550 -29.49468 -27.01382 -25.71955 -25.38276 -24.44004 -22.96862 -21.53212 -19.74816 -19.48443 -18.55706 -18.52014 -18.26830 -17.14818 -16.46200 -16.07386 -16.06142 -15.92923 -15.21972 -15.09393 -14.72067 -14.36052 -14.02536 -13.77071 -13.38977 -13.21212 -13.14574 -13.03094 -12.88856 -12.74205 -12.52693 -12.28756 -12.16560 -12.12800 -11.97495 -11.01867 -10.58127 -10.53942 -9.93508 -9.50094 -9.16509 -8.89701 -8.16361 -6.27613 -0.76364 -0.07253 -0.02552 0.38068 1.03071 1.39748 1.42967 1.52651 1.54198 2.39333 2.47863 3.00986 3.09646 3.13786 3.25148 3.73998 3.95914 4.00745 4.08869 4.20682 4.26477 4.34638 4.62885 4.69014 4.80544 4.88549 4.91162 4.98220 5.04158 5.11583 5.23710 5.26249 5.33753 5.41403 5.58122 5.67081 5.79785 6.07463 6.19276 6.42759 6.81801 7.41120 8.89552 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018295 B = 0.004951 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.064181 B = 5654.617041 C = 6536.621480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.223 3.777 3 H -0.026 1.026 4 C -0.520 4.520 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.283 1.283 12 N -0.543 5.543 13 C 0.052 3.948 14 C 0.278 3.722 15 N -0.452 5.452 16 C 0.033 3.967 17 C -0.089 4.089 18 C -0.081 4.081 19 C -0.076 4.076 20 C -0.077 4.077 21 C -0.004 4.004 22 O -0.183 6.183 23 C 0.451 3.549 24 S -0.576 6.576 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.042 0.958 28 H 0.264 0.736 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.181 0.819 36 H 0.192 0.808 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.999 -10.869 16.750 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.116 3.884 3 H -0.009 1.009 4 C -0.559 4.559 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.209 1.209 12 N -0.269 5.269 13 C -0.096 4.096 14 C 0.069 3.931 15 N -0.152 5.152 16 C -0.067 4.067 17 C -0.110 4.110 18 C -0.100 4.100 19 C -0.095 4.095 20 C -0.096 4.096 21 C -0.054 4.054 22 O -0.080 6.080 23 C 0.154 3.846 24 S -0.441 6.441 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.198 0.802 36 H 0.209 0.791 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.291 -10.474 16.429 21.174 hybrid contribution 0.625 0.571 -1.106 1.392 sum -7.666 -9.903 15.323 19.790 Atomic orbital electron populations 1.21722 0.95799 1.00152 1.00507 1.19100 0.93508 0.90480 0.85266 1.00873 1.21301 1.31481 1.12410 0.90669 0.92684 1.25583 0.95220 0.95667 1.01542 1.69980 1.37391 1.23743 1.24236 0.85512 0.78211 0.78492 0.79443 1.19714 1.20078 1.20948 1.62159 1.10868 1.52295 1.01609 1.22250 0.87202 0.99564 1.00627 1.22547 1.02965 0.88848 0.78771 1.46257 1.12725 1.31085 1.25110 1.19375 0.96745 0.94210 0.96369 1.20646 0.90605 0.98244 1.01538 1.21661 1.01653 0.93203 0.93454 1.21675 0.91751 0.99447 0.96637 1.20621 0.96231 0.92869 0.99909 1.20200 0.84313 1.00690 1.00159 1.85162 1.35514 1.42346 1.44946 1.25851 0.90364 0.87125 0.81251 1.93549 1.27142 1.41295 1.82158 0.94368 0.91491 0.93876 0.92701 0.96490 0.93240 0.92083 0.91213 0.84728 0.83762 0.80157 0.79094 0.81296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.76 71.98 0.63 -4.72 16 2 C 0.22 10.77 2.06 44.17 0.09 10.86 16 3 H -0.03 -1.44 8.14 -2.39 -0.02 -1.46 16 4 C -0.52 -27.82 7.93 25.60 0.20 -27.62 16 5 H 0.05 3.00 6.39 -2.91 -0.02 2.99 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.91 -50.39 11.32 21.45 0.24 -50.15 16 8 Si 0.96 42.91 29.54 68.60 2.03 44.94 16 9 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.54 -22.94 4.76 -913.84 -4.35 -27.29 16 13 C 0.05 2.31 8.01 127.69 1.02 3.33 16 14 C 0.28 9.87 5.46 170.81 0.93 10.80 16 15 N -0.45 -14.80 2.76 -642.04 -1.77 -16.57 16 16 C 0.03 0.86 6.84 38.32 0.26 1.13 16 17 C -0.09 -1.68 10.03 22.34 0.22 -1.46 16 18 C -0.08 -0.83 10.04 22.29 0.22 -0.60 16 19 C -0.08 -0.60 10.03 22.29 0.22 -0.37 16 20 C -0.08 -1.06 10.06 22.34 0.22 -0.84 16 21 C 0.00 -0.09 7.35 22.66 0.17 0.07 16 22 O -0.18 -5.74 10.73 -15.51 -0.17 -5.91 16 23 C 0.45 16.22 6.99 129.79 0.91 17.13 16 24 S -0.58 -24.30 27.91 -56.49 -1.58 -25.88 16 25 H 0.04 1.36 6.20 -2.39 -0.01 1.35 16 26 H 0.07 3.28 6.07 -2.39 -0.01 3.27 16 27 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 29 H 0.02 0.78 8.01 -2.39 -0.02 0.77 16 30 H 0.05 2.13 5.31 -2.39 -0.01 2.12 16 31 H 0.06 2.84 6.23 -2.38 -0.01 2.83 16 32 H 0.07 2.69 7.58 -2.39 -0.02 2.68 16 33 H 0.14 4.14 5.83 -2.38 -0.01 4.12 16 34 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 37 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -69.36 315.68 1.05 -68.30 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.09 Total: 3.35 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 5.56 Total: 9.20 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -5.88 Total: -94.01 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.17 Total: -5.91 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: -24.30 SS G_CDS: -1.58 Total: -25.88 kcal Total: -69.36 1.05 -68.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103461150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.983 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds