Wall clock time and date at job start Tue Mar 31 2020 06:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47439 * 2 1 4 4 N 1.46499 * 109.47486 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00033 * 85.06744 * 4 3 2 6 6 H 1.07999 * 120.00309 * 325.33999 * 5 4 3 7 7 C 1.38817 * 119.99651 * 145.33533 * 5 4 3 8 8 N 1.31614 * 120.00275 * 337.76306 * 7 5 4 9 9 Si 1.86803 * 119.99691 * 157.76655 * 7 5 4 10 10 H 1.48499 * 109.47042 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47133 * 119.99875 * 9 7 5 12 12 H 1.48510 * 109.46619 * 240.00024 * 9 7 5 13 13 C 1.46508 * 119.99741 * 265.07579 * 4 3 2 14 14 C 1.50691 * 109.47513 * 89.99832 * 13 4 3 15 15 C 1.33556 * 122.07433 * 94.99485 * 14 13 4 16 16 S 1.76240 * 108.25650 * 180.02562 * 15 14 13 17 17 C 1.76172 * 89.85224 * 0.02562 * 16 15 14 18 18 C 1.47867 * 125.47643 * 179.97438 * 17 16 15 19 19 C 1.46846 * 127.14253 * 359.73726 * 18 17 16 20 20 C 1.34316 * 106.01136 * 179.83131 * 19 18 17 21 21 O 1.34166 * 109.05538 * 0.43437 * 20 19 18 22 22 C 1.34035 * 110.79522 * 359.70889 * 21 20 19 23 23 N 1.30245 * 109.04513 * 359.73850 * 17 16 15 24 24 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47390 * 300.00254 * 1 2 3 26 26 H 1.09000 * 109.47067 * 60.00013 * 1 2 3 27 27 H 1.09001 * 109.47390 * 239.99746 * 2 1 3 28 28 H 1.09000 * 109.47067 * 119.99987 * 2 1 3 29 29 H 1.09001 * 109.47037 * 59.99530 * 3 2 1 30 30 H 1.09000 * 109.46980 * 300.00040 * 3 2 1 31 31 H 0.97001 * 120.00186 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46360 * 209.99883 * 13 4 3 33 33 H 1.08997 * 109.46716 * 329.99466 * 13 4 3 34 34 H 1.08008 * 125.86851 * 359.97438 * 15 14 13 35 35 H 1.07996 * 126.99923 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.47088 * 180.14228 * 20 19 18 37 37 H 1.08004 * 125.79225 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.3403 -1.1805 6 1 3.7943 0.7370 -1.9841 7 6 5.3936 2.0124 -1.3452 8 7 5.6702 3.0597 -0.5975 9 14 6.6205 1.4305 -2.6280 10 1 6.0752 0.2414 -3.3308 11 1 6.8637 2.5179 -3.6095 12 1 7.8981 1.0690 -1.9628 13 6 4.2370 1.5516 1.2651 14 6 4.4879 0.1736 1.8208 15 6 5.6290 -0.4838 1.5986 16 16 5.5332 -2.0459 2.4091 17 6 3.9165 -1.6441 2.9823 18 6 3.0604 -2.5152 3.8159 19 6 3.3811 -3.8589 4.3139 20 6 2.3123 -4.2556 5.0241 21 8 1.3823 -3.2891 4.9928 22 6 1.8098 -2.2404 4.2759 23 7 3.5986 -0.4545 2.5580 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.5109 3.5295 -0.7128 32 1 5.1894 2.0523 1.0913 33 1 3.6476 2.1289 1.9773 34 1 6.4662 -0.1209 1.0207 35 1 4.2920 -4.4142 4.1456 36 1 2.2152 -5.2026 5.5341 37 1 1.2557 -1.3313 4.0944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108360423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:43 Heat of formation + Delta-G solvation = 74.570454 kcal Electronic energy + Delta-G solvation = -20989.450137 eV Core-core repulsion = 17861.021659 eV Total energy + Delta-G solvation = -3128.428478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.38906 -39.00808 -35.94179 -33.42374 -32.88332 -31.02146 -30.19221 -28.84766 -26.28275 -25.56164 -24.59610 -22.20499 -21.64942 -20.57577 -20.05535 -18.53366 -18.03792 -16.99647 -16.21102 -16.00486 -15.23705 -14.86516 -14.40726 -14.07252 -13.91468 -13.59353 -13.13790 -13.03724 -12.94592 -12.81955 -12.41789 -12.03187 -11.55243 -11.40552 -11.21315 -10.99774 -10.75412 -10.49500 -10.36607 -10.17859 -10.05028 -9.94499 -9.62910 -9.16501 -9.05366 -8.65590 -8.55431 -7.69557 -6.68495 -5.88291 -3.40430 0.92935 1.84013 1.85534 2.31878 2.60990 3.00673 3.28846 3.39201 3.42859 3.69268 4.26637 4.43157 4.83675 4.96657 5.22381 5.31146 5.53810 5.70381 5.76547 5.81089 5.85621 6.05082 6.07185 6.13548 6.23280 6.28668 6.35225 6.53858 6.65799 6.71057 6.83116 6.98567 7.03866 7.05529 7.27890 7.50698 7.76397 8.37008 8.46533 9.10038 9.73405 10.30937 11.12293 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.005378 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.207515 B = 5205.477623 C = 6199.531754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.146 4.146 3 C 0.152 3.848 4 N -0.572 5.572 5 C -0.250 4.250 6 H 0.062 0.938 7 C 0.011 3.989 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.287 1.287 13 C 0.205 3.795 14 C 0.072 3.928 15 C -0.223 4.223 16 S 0.022 5.978 17 C 0.128 3.872 18 C -0.118 4.118 19 C -0.198 4.198 20 C -0.037 4.037 21 O -0.180 6.180 22 C 0.021 3.979 23 N -0.448 5.448 24 H 0.040 0.960 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.256 0.744 32 H 0.116 0.884 33 H 0.043 0.957 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.205 0.795 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.802 -11.379 9.961 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.186 4.186 3 C 0.026 3.974 4 N -0.289 5.289 5 C -0.380 4.380 6 H 0.079 0.921 7 C -0.189 4.189 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.213 1.213 13 C 0.075 3.925 14 C -0.061 4.061 15 C -0.362 4.362 16 S 0.276 5.724 17 C -0.147 4.147 18 C -0.123 4.123 19 C -0.218 4.218 20 C -0.104 4.104 21 O -0.076 6.076 22 C -0.052 4.052 23 N -0.164 5.164 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.222 0.778 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.710 -11.848 10.253 16.361 hybrid contribution 1.005 0.251 -1.277 1.644 sum -3.705 -11.597 8.977 15.126 Atomic orbital electron populations 1.21696 0.97484 1.00153 1.00852 1.22145 0.93643 1.01002 1.01835 1.20893 0.84597 0.93141 0.98756 1.43771 0.99716 1.83670 1.01766 1.19104 1.03472 1.22754 0.92655 0.92062 1.25076 1.00601 0.94962 0.98294 1.69952 1.24052 1.16940 1.41827 0.86393 0.81491 0.78640 0.81395 1.20046 1.21464 1.21316 1.19872 1.01215 0.85752 0.85638 1.21831 0.87723 1.02274 0.94267 1.26706 1.04796 0.95435 1.09310 1.84492 1.17295 1.21168 1.49441 1.24631 0.94396 0.93793 1.01920 1.19144 0.94763 0.94503 1.03889 1.22785 1.01056 0.95115 1.02851 1.23811 0.88229 0.94175 1.04136 1.83892 1.41960 1.23599 1.58177 1.24305 0.94810 0.91293 0.94766 1.66551 1.32511 1.05386 1.11904 0.94059 0.93392 0.93472 0.93210 0.91680 0.94474 0.93838 0.93360 0.86659 0.93877 0.81089 0.82943 0.77845 0.76916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.15 -2.85 6.23 -26.73 -0.17 -3.02 16 3 C 0.15 3.29 5.72 -4.04 -0.02 3.27 16 4 N -0.57 -14.06 2.44 -174.61 -0.43 -14.49 16 5 C -0.25 -6.67 9.48 -15.06 -0.14 -6.81 16 6 H 0.06 1.67 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.28 4.96 -17.43 -0.09 0.20 16 8 N -0.89 -24.35 11.31 55.49 0.63 -23.72 16 9 Si 0.89 20.97 29.61 -169.99 -5.03 15.94 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 13 C 0.21 4.83 5.74 -5.19 -0.03 4.80 16 14 C 0.07 1.54 6.20 -84.38 -0.52 1.02 16 15 C -0.22 -4.53 11.05 29.09 0.32 -4.20 16 16 S 0.02 0.38 23.33 -107.50 -2.51 -2.13 16 17 C 0.13 2.27 7.50 -14.28 -0.11 2.16 16 18 C -0.12 -1.74 6.32 -103.26 -0.65 -2.39 16 19 C -0.20 -2.33 11.05 -37.49 -0.41 -2.74 16 20 C -0.04 -0.36 12.04 29.35 0.35 -0.01 16 21 O -0.18 -2.09 10.54 6.79 0.07 -2.02 16 22 C 0.02 0.27 12.05 29.95 0.36 0.63 16 23 N -0.45 -8.87 9.04 -7.55 -0.07 -8.94 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.33 6.51 -51.93 -0.34 0.99 16 29 H 0.04 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 32 H 0.12 2.98 5.28 -51.93 -0.27 2.70 16 33 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 34 H 0.17 3.51 8.06 -52.48 -0.42 3.08 16 35 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.20 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.21 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -29.15 332.46 -7.85 -37.00 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.78 Total: 2.34 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.74 Total: -8.99 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.13 Total: -47.15 kcal Atomic # 8 Polarization: -2.09 SS G_CDS: 0.07 Total: -2.02 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -2.51 Total: -2.13 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.15 -7.85 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108360423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.568 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds