Wall clock time and date at job start Tue Mar 31 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47439 * 2 1 4 4 N 1.46499 * 109.47486 * 179.97438 * 3 2 1 5 5 C 1.36932 * 120.00033 * 85.06744 * 4 3 2 6 6 H 1.07999 * 120.00309 * 325.33999 * 5 4 3 7 7 C 1.38817 * 119.99651 * 145.33533 * 5 4 3 8 8 N 1.31614 * 120.00275 * 337.76306 * 7 5 4 9 9 Si 1.86803 * 119.99691 * 157.76655 * 7 5 4 10 10 H 1.48499 * 109.47042 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47133 * 119.99875 * 9 7 5 12 12 H 1.48510 * 109.46619 * 240.00024 * 9 7 5 13 13 C 1.46508 * 119.99741 * 265.07579 * 4 3 2 14 14 C 1.50691 * 109.47513 * 89.99832 * 13 4 3 15 15 C 1.33556 * 122.07433 * 94.99485 * 14 13 4 16 16 S 1.76240 * 108.25650 * 180.02562 * 15 14 13 17 17 C 1.76172 * 89.85224 * 0.02562 * 16 15 14 18 18 C 1.47867 * 125.47643 * 179.97438 * 17 16 15 19 19 C 1.46846 * 127.14253 * 359.73726 * 18 17 16 20 20 C 1.34316 * 106.01136 * 179.83131 * 19 18 17 21 21 O 1.34166 * 109.05538 * 0.43437 * 20 19 18 22 22 C 1.34035 * 110.79522 * 359.70889 * 21 20 19 23 23 N 1.30245 * 109.04513 * 359.73850 * 17 16 15 24 24 H 1.08995 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47390 * 300.00254 * 1 2 3 26 26 H 1.09000 * 109.47067 * 60.00013 * 1 2 3 27 27 H 1.09001 * 109.47390 * 239.99746 * 2 1 3 28 28 H 1.09000 * 109.47067 * 119.99987 * 2 1 3 29 29 H 1.09001 * 109.47037 * 59.99530 * 3 2 1 30 30 H 1.09000 * 109.46980 * 300.00040 * 3 2 1 31 31 H 0.97001 * 120.00186 * 180.02562 * 8 7 5 32 32 H 1.08998 * 109.46360 * 209.99883 * 13 4 3 33 33 H 1.08997 * 109.46716 * 329.99466 * 13 4 3 34 34 H 1.08008 * 125.86851 * 359.97438 * 15 14 13 35 35 H 1.07996 * 126.99923 * 359.97438 * 19 18 17 36 36 H 1.07998 * 125.47088 * 180.14228 * 20 19 18 37 37 H 1.08004 * 125.79225 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.3403 -1.1805 6 1 3.7943 0.7370 -1.9841 7 6 5.3936 2.0124 -1.3452 8 7 5.6702 3.0597 -0.5975 9 14 6.6205 1.4305 -2.6280 10 1 6.0752 0.2414 -3.3308 11 1 6.8637 2.5179 -3.6095 12 1 7.8981 1.0690 -1.9628 13 6 4.2370 1.5516 1.2651 14 6 4.4879 0.1736 1.8208 15 6 5.6290 -0.4838 1.5986 16 16 5.5332 -2.0459 2.4091 17 6 3.9165 -1.6441 2.9823 18 6 3.0604 -2.5152 3.8159 19 6 3.3811 -3.8589 4.3139 20 6 2.3123 -4.2556 5.0241 21 8 1.3823 -3.2891 4.9928 22 6 1.8098 -2.2404 4.2759 23 7 3.5986 -0.4545 2.5580 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 6.5109 3.5295 -0.7128 32 1 5.1894 2.0523 1.0913 33 1 3.6476 2.1289 1.9773 34 1 6.4662 -0.1209 1.0207 35 1 4.2920 -4.4142 4.1456 36 1 2.2152 -5.2026 5.5341 37 1 1.2557 -1.3313 4.0944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108360423.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:42 Heat of formation + Delta-G solvation = 59.043040 kcal Electronic energy + Delta-G solvation = -20990.123456 eV Core-core repulsion = 17861.021659 eV Total energy + Delta-G solvation = -3129.101797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.31359 -40.55042 -37.72079 -34.78510 -34.35928 -32.71156 -31.48800 -30.08334 -28.03553 -27.31415 -25.97982 -23.86714 -22.55706 -21.95416 -21.64887 -19.90124 -19.32599 -18.61826 -17.74546 -16.94783 -16.92900 -16.19163 -16.09574 -15.64525 -15.40525 -15.15230 -14.69564 -14.59329 -14.06178 -13.95429 -13.77862 -13.32001 -13.19555 -13.09135 -12.85750 -12.66850 -12.52280 -12.19720 -12.16367 -11.90548 -11.74643 -11.39592 -11.20709 -10.62948 -10.55052 -10.22235 -9.85325 -9.05246 -8.65075 -7.88632 -5.46282 -0.43053 0.43515 0.80715 0.93721 1.39378 1.44638 1.45998 1.54603 2.13454 2.22493 2.48665 3.04981 3.22866 3.78319 3.89886 3.97430 4.26676 4.31937 4.36061 4.47156 4.53642 4.65070 4.69532 4.81519 4.83595 4.96642 5.06876 5.11299 5.17322 5.23108 5.35210 5.41001 5.44062 5.58163 5.65646 5.67738 6.11755 6.40873 6.91089 7.10389 7.78968 8.33142 9.09164 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017896 B = 0.005378 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.207515 B = 5205.477623 C = 6199.531754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.133 4.133 3 C 0.151 3.849 4 N -0.586 5.586 5 C -0.261 4.261 6 H 0.049 0.951 7 C -0.026 4.026 8 N -0.912 5.912 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.283 1.283 13 C 0.213 3.787 14 C 0.065 3.935 15 C -0.255 4.255 16 S 0.083 5.917 17 C 0.137 3.863 18 C -0.157 4.157 19 C -0.215 4.215 20 C -0.013 4.013 21 O -0.180 6.180 22 C 0.032 3.968 23 N -0.472 5.472 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.253 0.747 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 -14.064 11.294 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.173 4.173 3 C 0.026 3.974 4 N -0.305 5.305 5 C -0.391 4.391 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.556 5.556 9 Si 0.775 3.225 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.209 1.209 13 C 0.083 3.917 14 C -0.068 4.068 15 C -0.395 4.395 16 S 0.338 5.662 17 C -0.139 4.139 18 C -0.163 4.163 19 C -0.235 4.235 20 C -0.079 4.079 21 O -0.075 6.075 22 C -0.042 4.042 23 N -0.187 5.187 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.268 0.732 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.714 -14.556 11.597 19.468 hybrid contribution 1.236 0.952 -1.527 2.183 sum -4.478 -13.604 10.070 17.507 Atomic orbital electron populations 1.21617 0.94202 1.01598 1.01865 1.21953 0.96393 0.98764 1.00203 1.20976 0.83299 0.94651 0.98501 1.43913 1.00817 1.84282 1.01529 1.19155 1.04197 1.22520 0.93270 0.93311 1.25627 1.01711 0.94961 1.00072 1.70055 1.24318 1.17877 1.43303 0.85532 0.79568 0.78000 0.79356 1.19943 1.21423 1.20949 1.19550 0.99677 0.87140 0.85328 1.21409 0.88672 1.01497 0.95223 1.26668 1.04486 0.98015 1.10303 1.84144 1.16297 1.17846 1.47917 1.25205 0.94959 0.93255 1.00472 1.19368 0.95578 0.95935 1.05372 1.23000 1.02636 0.94034 1.03846 1.24695 0.86513 0.94535 1.02136 1.83940 1.42396 1.23600 1.57546 1.24476 0.94171 0.91775 0.93760 1.66504 1.32506 1.06603 1.13121 0.92369 0.92058 0.92801 0.95446 0.92588 0.93829 0.94791 0.93501 0.89186 0.94399 0.82203 0.81639 0.73164 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.13 -5.20 6.23 30.59 0.19 -5.01 16 3 C 0.15 6.67 5.72 86.38 0.49 7.17 16 4 N -0.59 -29.89 2.44 -706.35 -1.72 -31.61 16 5 C -0.26 -14.40 9.48 84.04 0.80 -13.60 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 7 C -0.03 -1.42 4.96 84.86 0.42 -1.00 16 8 N -0.91 -51.83 11.31 21.65 0.25 -51.58 16 9 Si 0.95 44.08 29.61 68.60 2.03 46.11 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.21 10.45 5.74 85.63 0.49 10.94 16 14 C 0.07 2.87 6.20 41.55 0.26 3.12 16 15 C -0.26 -10.59 11.05 66.76 0.74 -9.85 16 16 S 0.08 2.73 23.33 -56.49 -1.32 1.41 16 17 C 0.14 4.70 7.50 87.48 0.66 5.35 16 18 C -0.16 -4.31 6.32 -18.98 -0.12 -4.43 16 19 C -0.22 -4.35 11.05 23.63 0.26 -4.09 16 20 C -0.01 -0.20 12.04 66.92 0.81 0.61 16 21 O -0.18 -3.51 10.54 1.40 0.01 -3.50 16 22 C 0.03 0.75 12.05 67.31 0.81 1.56 16 23 N -0.47 -18.75 9.04 -177.80 -1.61 -20.36 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 2.29 6.51 -2.39 -0.02 2.27 16 29 H 0.04 1.83 7.84 -2.39 -0.02 1.81 16 30 H 0.03 1.53 8.08 -2.39 -0.02 1.51 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.16 16 32 H 0.09 4.90 5.28 -2.39 -0.01 4.89 16 33 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 34 H 0.16 6.86 8.06 -2.91 -0.02 6.84 16 35 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.25 1.12 8.06 -2.91 -0.02 1.09 16 37 H 0.22 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -64.57 332.46 5.23 -59.34 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.07 Total: 12.70 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 6.52 Total: -12.52 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -3.08 Total: -103.55 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: 0.01 Total: -3.50 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.32 Total: 1.41 kcal Total: -64.57 5.23 -59.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108360423.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.382 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds