Wall clock time and date at job start Tue Mar 31 2020 06:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47237 * 2 1 4 4 N 1.46500 * 109.47164 * 180.02562 * 3 2 1 5 5 C 1.36941 * 119.99912 * 269.47567 * 4 3 2 6 6 H 1.08001 * 119.99564 * 326.00877 * 5 4 3 7 7 C 1.38803 * 120.00371 * 146.01266 * 5 4 3 8 8 N 1.31619 * 119.99753 * 336.68099 * 7 5 4 9 9 Si 1.86801 * 120.00331 * 156.67644 * 7 5 4 10 10 H 1.48506 * 109.46854 * 90.00283 * 9 7 5 11 11 H 1.48491 * 109.47457 * 209.99941 * 9 7 5 12 12 H 1.48498 * 109.47091 * 330.00474 * 9 7 5 13 13 C 1.46496 * 120.00023 * 89.47623 * 4 3 2 14 14 C 1.50698 * 109.47258 * 89.99993 * 13 4 3 15 15 C 1.33691 * 122.06030 * 95.00099 * 14 13 4 16 16 S 1.76245 * 108.26445 * 179.73633 * 15 14 13 17 17 C 1.76178 * 89.85403 * 0.30189 * 16 15 14 18 18 C 1.47103 * 125.48174 * 179.97438 * 17 16 15 19 19 C 1.36268 * 125.96076 * 359.69715 * 18 17 16 20 20 C 1.40783 * 106.72297 * 180.02562 * 19 18 17 21 21 C 1.34823 * 107.07389 * 359.97438 * 20 19 18 22 22 O 1.34276 * 108.72537 * 0.26568 * 21 20 19 23 23 N 1.30482 * 109.03465 * 359.69316 * 17 16 15 24 24 H 1.09003 * 109.47060 * 300.00298 * 1 2 3 25 25 H 1.09000 * 109.46810 * 59.99779 * 1 2 3 26 26 H 1.08996 * 109.47446 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47106 * 239.99721 * 2 1 3 28 28 H 1.09000 * 109.46810 * 120.00221 * 2 1 3 29 29 H 1.09003 * 109.47338 * 59.99873 * 3 2 1 30 30 H 1.09003 * 109.47031 * 300.00217 * 3 2 1 31 31 H 0.96999 * 120.00089 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.47083 * 329.99534 * 13 4 3 33 33 H 1.09008 * 109.46979 * 209.99861 * 13 4 3 34 34 H 1.08000 * 125.86828 * 359.97438 * 15 14 13 35 35 H 1.07994 * 126.63580 * 0.03001 * 19 18 17 36 36 H 1.07996 * 126.46057 * 180.02562 * 20 19 18 37 37 H 1.07999 * 125.63695 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4531 1.1850 6 1 3.7889 1.9837 2.0358 7 6 5.4005 0.7821 1.2933 8 7 5.6780 -0.2106 0.4749 9 14 6.6353 1.2880 2.6005 10 1 6.3814 0.5189 3.8453 11 1 8.0110 1.0071 2.1171 12 1 6.4950 2.7400 2.8784 13 6 4.2370 1.4310 -1.2696 14 6 4.4880 2.8478 -1.7175 15 6 5.6305 3.4864 -1.4449 16 16 5.5387 5.1036 -2.1395 17 6 3.9196 4.7500 -2.7374 18 6 3.0695 5.6773 -3.4998 19 6 3.3952 6.9512 -3.8575 20 6 2.2954 7.4657 -4.5699 21 6 1.3622 6.4937 -4.6135 22 8 1.8304 5.4171 -3.9618 23 7 3.5982 3.5311 -2.4002 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 6.5239 -0.6793 0.5503 32 1 3.6477 0.9103 -2.0242 33 1 5.1896 0.9183 -1.1350 34 1 6.4675 3.0798 -0.8967 35 1 4.3184 7.4664 -3.6371 36 1 2.2148 8.4526 -5.0010 37 1 0.3960 6.5698 -5.0901 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114715451.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:40 Heat of formation + Delta-G solvation = 60.862012 kcal Electronic energy + Delta-G solvation = -20705.608658 eV Core-core repulsion = 17576.585738 eV Total energy + Delta-G solvation = -3129.022920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.49683 -40.60788 -37.77649 -34.69993 -34.14332 -33.19754 -32.11040 -30.01439 -28.09364 -27.32744 -25.70911 -23.83990 -22.85490 -22.15014 -21.50348 -20.25943 -19.37591 -18.60752 -17.80051 -17.15638 -16.87573 -16.38680 -16.09781 -15.83414 -15.32218 -15.04976 -14.57814 -14.36226 -14.13203 -13.85419 -13.80879 -13.45202 -13.44108 -13.25149 -12.75205 -12.57433 -12.44612 -12.24199 -12.15402 -11.92226 -11.78595 -11.39152 -11.07189 -10.79946 -10.65524 -10.55347 -10.09437 -8.95336 -8.68149 -7.89470 -5.43704 -0.67340 0.11014 0.65579 0.86280 1.42937 1.47095 1.56268 1.59253 2.07760 2.16373 2.49913 3.01266 3.22792 3.75074 3.98133 4.02348 4.20478 4.23245 4.34088 4.43869 4.47711 4.64820 4.75270 4.79369 4.89771 4.92541 4.97644 5.02160 5.11158 5.21946 5.26374 5.41456 5.49363 5.54741 5.57838 5.71509 6.07484 6.40286 6.82907 7.08996 7.76932 8.33025 9.10380 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.005359 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.023914 B = 5223.378630 C = 6678.464642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.150 3.850 4 N -0.585 5.585 5 C -0.266 4.266 6 H 0.052 0.948 7 C -0.025 4.025 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.284 1.284 11 H -0.283 1.283 12 H -0.275 1.275 13 C 0.215 3.785 14 C 0.055 3.945 15 C -0.244 4.244 16 S 0.158 5.842 17 C 0.102 3.898 18 C 0.015 3.985 19 C -0.161 4.161 20 C -0.214 4.214 21 C -0.017 4.017 22 O -0.183 6.183 23 N -0.474 5.474 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.040 0.960 31 H 0.256 0.744 32 H 0.032 0.968 33 H 0.096 0.904 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.190 0.810 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 14.370 -9.867 18.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.024 3.976 4 N -0.304 5.304 5 C -0.396 4.396 6 H 0.069 0.931 7 C -0.222 4.222 8 N -0.553 5.553 9 Si 0.776 3.224 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.200 1.200 13 C 0.085 3.915 14 C -0.079 4.079 15 C -0.384 4.384 16 S 0.412 5.588 17 C -0.172 4.172 18 C -0.038 4.038 19 C -0.184 4.184 20 C -0.232 4.232 21 C -0.087 4.087 22 O -0.079 6.079 23 N -0.190 5.190 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.113 0.887 34 H 0.191 0.809 35 H 0.189 0.811 36 H 0.208 0.792 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -4.555 14.577 -9.957 18.231 hybrid contribution 0.720 -1.016 1.128 1.680 sum -3.835 13.561 -8.829 16.630 Atomic orbital electron populations 1.21652 0.94172 1.01830 1.01764 1.21879 0.96177 0.98741 0.99964 1.20989 0.83645 0.94591 0.98343 1.43938 1.00668 1.84352 1.01476 1.19187 1.03807 1.25743 0.90902 0.93059 1.25614 1.01677 0.94940 1.00016 1.70073 1.23997 1.19953 1.41311 0.85587 0.78974 0.78393 0.79431 1.21102 1.20894 1.19988 1.19513 0.99699 0.86388 0.85876 1.21492 0.88897 1.01551 0.95923 1.26978 1.04289 0.97291 1.09823 1.83922 1.11714 1.13494 1.49622 1.24730 0.96438 0.93162 1.02873 1.19161 0.85405 0.94190 1.05016 1.22188 1.02480 0.92100 1.01588 1.22144 0.93140 1.02803 1.05139 1.25279 1.01995 0.83752 0.97636 1.84196 1.27305 1.40295 1.56132 1.66666 1.33166 1.05189 1.14018 0.92484 0.92488 0.92038 0.94491 0.94424 0.94472 0.94169 0.93464 0.95006 0.88654 0.80873 0.81121 0.79236 0.73589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.91 71.98 0.71 -3.64 16 2 C -0.13 -5.37 6.26 30.59 0.19 -5.18 16 3 C 0.15 6.90 5.67 86.38 0.49 7.39 16 4 N -0.59 -30.40 2.43 -706.36 -1.72 -32.12 16 5 C -0.27 -14.67 9.48 84.03 0.80 -13.88 16 6 H 0.05 2.87 7.93 -2.91 -0.02 2.85 16 7 C -0.02 -1.33 4.94 84.86 0.42 -0.91 16 8 N -0.91 -51.31 11.34 21.65 0.25 -51.07 16 9 Si 0.95 43.31 29.61 68.60 2.03 45.34 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 C 0.21 10.79 5.70 85.63 0.49 11.28 16 14 C 0.06 2.50 6.27 41.60 0.26 2.76 16 15 C -0.24 -9.82 11.06 66.79 0.74 -9.08 16 16 S 0.16 4.94 23.19 -56.49 -1.31 3.63 16 17 C 0.10 3.71 7.50 87.22 0.65 4.37 16 18 C 0.02 0.48 7.24 24.14 0.17 0.65 16 19 C -0.16 -3.61 10.64 22.43 0.24 -3.37 16 20 C -0.21 -3.57 10.88 22.11 0.24 -3.33 16 21 C -0.02 -0.31 12.08 67.04 0.81 0.50 16 22 O -0.18 -5.49 10.68 -6.94 -0.07 -5.56 16 23 N -0.47 -20.64 10.57 -178.36 -1.89 -22.53 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 30 H 0.04 1.83 8.08 -2.39 -0.02 1.82 16 31 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.10 5.20 5.27 -2.38 -0.01 5.18 16 34 H 0.17 6.95 8.06 -2.91 -0.02 6.92 16 35 H 0.17 3.05 8.06 -2.91 -0.02 3.02 16 36 H 0.19 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.25 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -66.88 335.41 4.57 -62.31 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.07 Total: 12.42 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 6.22 Total: -12.42 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.36 Total: -105.71 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.07 Total: -5.56 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.31 Total: 3.63 kcal Total: -66.88 4.57 -62.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114715451.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.172 kcal (2) G-P(sol) polarization free energy of solvation -66.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds