Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46861 * 307.95955 * 3 2 1 5 5 C 1.37095 * 119.99791 * 264.23005 * 4 3 2 6 6 H 1.07997 * 119.99961 * 197.72815 * 5 4 3 7 7 C 1.38949 * 120.00249 * 17.72533 * 5 4 3 8 8 N 1.31419 * 119.99624 * 21.39329 * 7 5 4 9 9 Si 1.86792 * 120.00246 * 201.39318 * 7 5 4 10 10 H 1.48503 * 109.47039 * 59.99983 * 9 7 5 11 11 H 1.48500 * 109.47574 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47256 * 299.99920 * 9 7 5 13 13 C 1.34780 * 119.99696 * 84.23548 * 4 3 2 14 14 O 1.21293 * 119.99507 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00156 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.46712 * 180.02562 * 15 13 4 17 17 O 1.42906 * 109.46946 * 179.97438 * 16 15 13 18 18 C 1.35953 * 116.99975 * 180.02562 * 17 16 15 19 19 C 1.38657 * 120.06251 * 359.97438 * 18 17 16 20 20 C 1.38180 * 119.97046 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.09546 * 359.97438 * 20 19 18 22 22 C 1.38262 * 120.12299 * 0.02562 * 21 20 19 23 23 C 1.38328 * 120.03182 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.05178 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.46740 * 187.95842 * 3 2 1 26 26 H 1.09001 * 109.47114 * 67.96196 * 3 2 1 27 27 H 0.97004 * 119.99594 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46850 * 60.00339 * 15 13 4 29 29 H 1.08996 * 109.46870 * 300.00002 * 15 13 4 30 30 H 1.09001 * 109.46962 * 60.00056 * 16 15 13 31 31 H 1.08996 * 109.47404 * 299.99612 * 16 15 13 32 32 H 1.08000 * 120.01906 * 0.04486 * 19 18 17 33 33 H 1.08002 * 119.95619 * 180.27329 * 20 19 18 34 34 H 1.07998 * 119.93869 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.98462 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0967 -0.8488 1.0891 5 6 3.4375 -0.2903 2.2938 6 1 4.0541 -0.8406 2.9890 7 6 2.9895 0.9838 2.6205 8 7 1.9360 1.4850 2.0157 9 14 3.8848 1.9842 3.9193 10 1 5.2928 2.1962 3.4974 11 1 3.2139 3.2991 4.0811 12 1 3.8601 1.2530 5.2115 13 6 3.2114 -2.1792 0.9064 14 8 3.6164 -2.8823 1.8079 15 6 2.8364 -2.7931 -0.4178 16 6 3.0578 -4.3058 -0.3595 17 8 2.7017 -4.8881 -1.6150 18 6 2.8400 -6.2355 -1.7319 19 6 3.3091 -6.9811 -0.6611 20 6 3.4495 -8.3504 -0.7821 21 6 3.1224 -8.9786 -1.9696 22 6 2.6543 -8.2390 -3.0398 23 6 2.5127 -6.8678 -2.9247 24 9 2.0548 -6.1447 -3.9701 25 1 2.9709 1.0186 0.1423 26 1 2.9716 -0.3848 -0.9526 27 1 1.6235 2.3747 2.2435 28 1 3.4564 -2.3648 -1.2054 29 1 1.7870 -2.5877 -0.6293 30 1 2.4375 -4.7337 0.4281 31 1 4.1071 -4.5116 -0.1478 32 1 3.5644 -6.4919 0.2673 33 1 3.8107 -8.9315 0.0535 34 1 3.2335 -10.0489 -2.0616 35 1 2.3990 -8.7320 -3.9662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119885618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = -53.714989 kcal Electronic energy + Delta-G solvation = -22208.464946 eV Core-core repulsion = 18508.260418 eV Total energy + Delta-G solvation = -3700.204528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.79062 -40.07364 -38.95740 -37.47863 -35.88272 -34.43185 -32.22951 -31.48460 -30.81238 -29.51577 -27.52030 -25.64097 -23.95408 -22.59717 -21.96125 -19.22112 -18.47700 -17.98580 -17.22621 -16.61938 -16.59857 -16.26171 -16.08400 -15.31235 -15.09026 -14.61719 -14.42340 -14.35856 -13.92413 -13.81877 -13.06482 -12.91836 -12.79574 -12.61224 -12.14664 -12.03428 -11.80236 -11.63406 -11.51109 -11.36456 -11.18245 -10.98888 -10.70014 -10.57320 -10.48322 -10.34824 -9.33854 -9.08670 -8.76730 -8.27462 -8.14230 -6.58342 -4.08431 0.98394 1.14023 2.96522 3.06912 3.18217 3.21169 3.45193 3.47162 3.72298 3.93292 4.06468 4.15292 4.58245 4.69489 4.76679 4.83875 5.03153 5.05947 5.13705 5.14964 5.22655 5.36523 5.50665 5.69303 5.84647 5.90414 5.93971 6.02771 6.08333 6.12813 6.24257 6.44379 6.55927 7.29811 7.39628 7.78361 8.17811 8.69298 8.89383 9.09516 9.60829 10.47547 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.003386 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.081382 B = 8268.031128 C = 9037.161164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.244 3.756 3 C 0.219 3.781 4 N -0.437 5.437 5 C -0.318 4.318 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.874 5.874 9 Si 0.930 3.070 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.458 3.542 14 O -0.577 6.577 15 C -0.135 4.135 16 C 0.079 3.921 17 O -0.311 6.311 18 C 0.108 3.892 19 C -0.182 4.182 20 C -0.089 4.089 21 C -0.137 4.137 22 C -0.119 4.119 23 C 0.062 3.938 24 F -0.134 7.134 25 H 0.129 0.871 26 H 0.087 0.913 27 H 0.275 0.725 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.894 -13.179 -8.939 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.074 4.074 3 C 0.092 3.908 4 N -0.156 5.156 5 C -0.444 4.444 6 H 0.127 0.873 7 C -0.171 4.171 8 N -0.513 5.513 9 Si 0.756 3.244 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.246 3.754 14 O -0.461 6.461 15 C -0.176 4.176 16 C 0.004 3.996 17 O -0.224 6.224 18 C 0.061 3.939 19 C -0.201 4.201 20 C -0.107 4.107 21 C -0.155 4.155 22 C -0.138 4.138 23 C 0.042 3.958 24 F -0.112 7.112 25 H 0.147 0.853 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.227 -13.132 -8.636 16.045 hybrid contribution 0.562 0.867 0.708 1.253 sum 3.790 -12.265 -7.928 15.088 Atomic orbital electron populations 1.80911 1.13574 1.10023 1.10436 1.29264 0.95335 0.91723 0.91104 1.18784 0.81680 1.00050 0.90323 1.43589 1.56046 1.03978 1.12019 1.19691 1.30295 0.99165 0.95298 0.87268 1.25307 0.94893 0.98106 0.98763 1.69863 1.19627 1.18283 1.43502 0.85934 0.79471 0.78469 0.80551 1.19613 1.20961 1.19756 1.19714 0.84461 0.82392 0.88787 1.90552 1.50800 1.60067 1.44649 1.21472 1.04084 0.93435 0.98588 1.22563 1.01237 0.93181 0.82635 1.86071 1.81811 1.16867 1.37657 1.19056 0.97391 0.84004 0.93439 1.21366 1.04653 0.95139 0.98951 1.21048 0.98040 0.93765 0.97856 1.20899 1.01661 1.00143 0.92823 1.20986 1.01128 0.90972 1.00723 1.17033 1.05704 0.89427 0.83623 1.91499 1.86717 1.77741 1.55278 0.85346 0.89571 0.91418 0.88727 0.89148 0.90963 0.90773 0.83874 0.85074 0.85057 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.10 18.54 42.16 0.78 -10.31 16 2 C 0.24 5.31 12.95 -20.76 -0.27 5.04 16 3 C 0.22 4.20 4.91 -6.83 -0.03 4.17 16 4 N -0.44 -9.82 2.60 -117.93 -0.31 -10.13 16 5 C -0.32 -7.93 9.32 -14.93 -0.14 -8.07 16 6 H 0.11 2.86 7.39 -52.49 -0.39 2.48 16 7 C 0.03 0.81 4.87 -17.47 -0.08 0.72 16 8 N -0.87 -21.57 9.48 55.50 0.53 -21.04 16 9 Si 0.93 19.12 29.60 -169.99 -5.03 14.08 16 10 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.46 9.87 7.57 -10.98 -0.08 9.79 16 14 O -0.58 -14.18 15.63 5.55 0.09 -14.09 16 15 C -0.14 -2.28 4.67 -27.88 -0.13 -2.41 16 16 C 0.08 1.24 4.03 37.16 0.15 1.39 16 17 O -0.31 -4.90 10.00 -19.59 -0.20 -5.10 16 18 C 0.11 1.53 6.69 -39.18 -0.26 1.27 16 19 C -0.18 -2.20 9.04 -39.45 -0.36 -2.56 16 20 C -0.09 -0.86 10.04 -39.59 -0.40 -1.26 16 21 C -0.14 -1.21 10.04 -39.56 -0.40 -1.61 16 22 C -0.12 -1.21 10.02 -39.54 -0.40 -1.60 16 23 C 0.06 0.82 7.31 -39.30 -0.29 0.54 16 24 F -0.13 -1.95 17.11 2.25 0.04 -1.92 16 25 H 0.13 2.51 6.46 -51.93 -0.34 2.18 16 26 H 0.09 1.25 6.68 -51.93 -0.35 0.90 16 27 H 0.28 6.60 8.31 -40.82 -0.34 6.27 16 28 H 0.09 1.34 7.41 -51.93 -0.39 0.96 16 29 H 0.09 1.55 7.51 -51.93 -0.39 1.16 16 30 H 0.07 1.17 7.62 -51.93 -0.40 0.78 16 31 H 0.07 1.12 7.62 -51.93 -0.40 0.72 16 32 H 0.14 1.68 6.30 -52.49 -0.33 1.35 16 33 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -30.44 315.22 -5.41 -35.85 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.37 Total: 2.50 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.69 Total: 5.41 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 1.00 Total: -41.49 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.11 Total: -19.19 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.44 -5.41 -35.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119885618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.867 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds