Wall clock time and date at job start Tue Mar 31 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46861 * 307.95955 * 3 2 1 5 5 C 1.37095 * 119.99791 * 264.23005 * 4 3 2 6 6 H 1.07997 * 119.99961 * 197.72815 * 5 4 3 7 7 C 1.38949 * 120.00249 * 17.72533 * 5 4 3 8 8 N 1.31419 * 119.99624 * 21.39329 * 7 5 4 9 9 Si 1.86792 * 120.00246 * 201.39318 * 7 5 4 10 10 H 1.48503 * 109.47039 * 59.99983 * 9 7 5 11 11 H 1.48500 * 109.47574 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47256 * 299.99920 * 9 7 5 13 13 C 1.34780 * 119.99696 * 84.23548 * 4 3 2 14 14 O 1.21293 * 119.99507 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00156 * 359.97438 * 13 4 3 16 16 C 1.52998 * 109.46712 * 180.02562 * 15 13 4 17 17 O 1.42906 * 109.46946 * 179.97438 * 16 15 13 18 18 C 1.35953 * 116.99975 * 180.02562 * 17 16 15 19 19 C 1.38657 * 120.06251 * 359.97438 * 18 17 16 20 20 C 1.38180 * 119.97046 * 180.02562 * 19 18 17 21 21 C 1.38264 * 120.09546 * 359.97438 * 20 19 18 22 22 C 1.38262 * 120.12299 * 0.02562 * 21 20 19 23 23 C 1.38328 * 120.03182 * 0.02562 * 22 21 20 24 24 F 1.35101 * 120.05178 * 180.02562 * 23 22 21 25 25 H 1.08996 * 109.46740 * 187.95842 * 3 2 1 26 26 H 1.09001 * 109.47114 * 67.96196 * 3 2 1 27 27 H 0.97004 * 119.99594 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46850 * 60.00339 * 15 13 4 29 29 H 1.08996 * 109.46870 * 300.00002 * 15 13 4 30 30 H 1.09001 * 109.46962 * 60.00056 * 16 15 13 31 31 H 1.08996 * 109.47404 * 299.99612 * 16 15 13 32 32 H 1.08000 * 120.01906 * 0.04486 * 19 18 17 33 33 H 1.08002 * 119.95619 * 180.27329 * 20 19 18 34 34 H 1.07998 * 119.93869 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.98462 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0967 -0.8488 1.0891 5 6 3.4375 -0.2903 2.2938 6 1 4.0541 -0.8406 2.9890 7 6 2.9895 0.9838 2.6205 8 7 1.9360 1.4850 2.0157 9 14 3.8848 1.9842 3.9193 10 1 5.2928 2.1962 3.4974 11 1 3.2139 3.2991 4.0811 12 1 3.8601 1.2530 5.2115 13 6 3.2114 -2.1792 0.9064 14 8 3.6164 -2.8823 1.8079 15 6 2.8364 -2.7931 -0.4178 16 6 3.0578 -4.3058 -0.3595 17 8 2.7017 -4.8881 -1.6150 18 6 2.8400 -6.2355 -1.7319 19 6 3.3091 -6.9811 -0.6611 20 6 3.4495 -8.3504 -0.7821 21 6 3.1224 -8.9786 -1.9696 22 6 2.6543 -8.2390 -3.0398 23 6 2.5127 -6.8678 -2.9247 24 9 2.0548 -6.1447 -3.9701 25 1 2.9709 1.0186 0.1423 26 1 2.9716 -0.3848 -0.9526 27 1 1.6235 2.3747 2.2435 28 1 3.4564 -2.3648 -1.2054 29 1 1.7870 -2.5877 -0.6293 30 1 2.4375 -4.7337 0.4281 31 1 4.1071 -4.5116 -0.1478 32 1 3.5644 -6.4919 0.2673 33 1 3.8107 -8.9315 0.0535 34 1 3.2335 -10.0489 -2.0616 35 1 2.3990 -8.7320 -3.9662 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119885618.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:41 Heat of formation + Delta-G solvation = -71.325508 kcal Electronic energy + Delta-G solvation = -22209.228595 eV Core-core repulsion = 18508.260418 eV Total energy + Delta-G solvation = -3700.968177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.81008 -41.18183 -40.53134 -38.47389 -37.63471 -36.22525 -33.94115 -32.91566 -31.65250 -30.51143 -29.18880 -27.22095 -25.31717 -23.50356 -23.03708 -20.80003 -19.79906 -19.54845 -18.35481 -18.15558 -17.70141 -17.51205 -17.41912 -16.51635 -16.42446 -15.98649 -15.80519 -15.43941 -15.36136 -14.92334 -14.75028 -14.45565 -14.05346 -13.82865 -13.69393 -13.40876 -13.16639 -12.98711 -12.91870 -12.79470 -12.52586 -12.34796 -12.16672 -12.12937 -11.97881 -11.79081 -11.13448 -10.54025 -9.96735 -9.93714 -9.22617 -8.42719 -5.99190 0.13628 0.27400 1.39433 1.48771 1.57295 1.72369 1.88608 2.06168 2.22909 2.36389 2.61757 2.98121 3.14087 3.27275 3.56451 3.66303 3.82170 3.90925 3.96612 4.07585 4.21676 4.33550 4.37439 4.49024 4.61380 4.74299 4.77871 4.88555 5.01138 5.11399 5.27442 5.44336 5.47237 5.72060 5.98354 6.25042 6.35022 6.97636 7.07196 7.30181 7.84278 8.60844 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027824 B = 0.003386 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.081382 B = 8268.031128 C = 9037.161164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.449 5.449 5 C -0.344 4.344 6 H 0.087 0.913 7 C 0.007 3.993 8 N -0.892 5.892 9 Si 0.988 3.012 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.455 3.545 14 O -0.614 6.614 15 C -0.125 4.125 16 C 0.089 3.911 17 O -0.326 6.326 18 C 0.075 3.925 19 C -0.194 4.194 20 C -0.085 4.085 21 C -0.123 4.123 22 C -0.114 4.114 23 C 0.035 3.965 24 F -0.149 7.149 25 H 0.127 0.873 26 H 0.140 0.860 27 H 0.275 0.725 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 -14.631 -9.858 18.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.168 5.168 5 C -0.471 4.471 6 H 0.105 0.895 7 C -0.196 4.196 8 N -0.530 5.530 9 Si 0.813 3.187 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.245 3.755 14 O -0.499 6.499 15 C -0.165 4.165 16 C 0.014 3.986 17 O -0.240 6.240 18 C 0.029 3.971 19 C -0.212 4.212 20 C -0.103 4.103 21 C -0.141 4.141 22 C -0.132 4.132 23 C 0.015 3.985 24 F -0.128 7.128 25 H 0.145 0.855 26 H 0.157 0.843 27 H 0.085 0.915 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.189 0.811 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.158 -14.586 -9.582 17.940 hybrid contribution 0.279 1.158 0.999 1.554 sum 4.437 -13.428 -8.584 16.543 Atomic orbital electron populations 1.80910 1.14832 1.11365 1.11757 1.29780 0.95852 0.90528 0.89916 1.19135 0.80034 0.99967 0.91601 1.43750 1.56172 1.04743 1.12184 1.19635 1.31115 0.99898 0.96484 0.89533 1.25923 0.95056 0.98280 1.00326 1.69946 1.20178 1.18356 1.44491 0.85056 0.78993 0.76862 0.77826 1.18357 1.20598 1.20759 1.20465 0.82991 0.82057 0.90011 1.90523 1.52121 1.60916 1.46389 1.21365 1.04468 0.94123 0.96550 1.22333 1.01114 0.92461 0.82740 1.86003 1.82585 1.18299 1.37116 1.19379 0.99576 0.83415 0.94746 1.21482 1.05065 0.96418 0.98281 1.21459 0.96801 0.92795 0.99257 1.21389 0.99200 1.01921 0.91578 1.21380 0.99924 0.89607 1.02297 1.17461 1.07119 0.90689 0.83194 1.91451 1.87131 1.78337 1.55839 0.85518 0.84252 0.91459 0.85389 0.89190 0.92264 0.90496 0.84380 0.82205 0.81138 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.00 18.54 20.01 0.37 -23.63 16 2 C 0.26 11.03 12.95 89.44 1.16 12.19 16 3 C 0.22 8.13 4.91 84.57 0.42 8.55 16 4 N -0.45 -20.14 2.60 -645.40 -1.68 -21.82 16 5 C -0.34 -17.38 9.32 84.04 0.78 -16.59 16 6 H 0.09 4.68 7.39 -2.91 -0.02 4.66 16 7 C 0.01 0.32 4.87 84.92 0.41 0.73 16 8 N -0.89 -43.77 9.48 21.66 0.21 -43.56 16 9 Si 0.99 39.07 29.60 68.60 2.03 41.10 16 10 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 11 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 13 C 0.45 19.65 7.57 87.66 0.66 20.31 16 14 O -0.61 -30.83 15.63 -3.07 -0.05 -30.88 16 15 C -0.13 -4.12 4.67 29.85 0.14 -3.98 16 16 C 0.09 2.81 4.03 71.98 0.29 3.10 16 17 O -0.33 -10.36 10.00 -93.03 -0.93 -11.29 16 18 C 0.07 2.11 6.69 22.53 0.15 2.26 16 19 C -0.19 -4.55 9.04 22.36 0.20 -4.35 16 20 C -0.09 -1.41 10.04 22.26 0.22 -1.19 16 21 C -0.12 -1.71 10.04 22.28 0.22 -1.48 16 22 C -0.11 -2.01 10.02 22.30 0.22 -1.79 16 23 C 0.04 0.91 7.31 22.45 0.16 1.07 16 24 F -0.15 -4.35 17.11 44.97 0.77 -3.58 16 25 H 0.13 4.81 6.46 -2.39 -0.02 4.80 16 26 H 0.14 3.64 6.68 -2.39 -0.02 3.62 16 27 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 28 H 0.13 3.33 7.41 -2.39 -0.02 3.31 16 29 H 0.09 3.01 7.51 -2.39 -0.02 3.00 16 30 H 0.06 1.99 7.62 -2.39 -0.02 1.97 16 31 H 0.08 2.35 7.62 -2.39 -0.02 2.33 16 32 H 0.14 3.29 6.30 -2.91 -0.02 3.27 16 33 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -67.71 315.22 6.91 -60.80 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.14 Total: 14.01 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 5.05 Total: 18.84 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -1.10 Total: -89.01 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.98 Total: -42.17 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.58 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -67.71 6.91 -60.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119885618.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.528 kcal (2) G-P(sol) polarization free energy of solvation -67.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds