Wall clock time and date at job start Tue Mar 31 2020 06:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47153 * 2 1 4 4 C 1.47205 * 109.46877 * 240.00215 * 2 1 3 5 5 N 2.60805 * 109.46989 * 240.00392 * 2 1 3 6 6 C 1.50694 * 109.47130 * 120.00467 * 2 1 3 7 7 O 1.21302 * 119.99956 * 120.00249 * 6 2 1 8 8 N 1.34774 * 120.00115 * 299.99643 * 6 2 1 9 9 C 1.40092 * 120.00113 * 185.61178 * 8 6 2 10 10 C 1.38702 * 120.07628 * 34.07136 * 9 8 6 11 11 C 1.38190 * 120.02309 * 179.97438 * 10 9 8 12 12 C 1.38558 * 120.17236 * 0.02562 * 11 10 9 13 13 F 1.35099 * 119.91720 * 179.97438 * 12 11 10 14 14 C 1.38334 * 120.15526 * 0.02562 * 12 11 10 15 15 C 1.38738 * 119.97954 * 359.97438 * 14 12 11 16 16 O 1.35773 * 120.09095 * 180.29829 * 15 14 12 17 17 C 1.34809 * 117.00177 * 354.19553 * 16 15 14 18 18 H 1.08003 * 119.99138 * 354.51432 * 17 16 15 19 19 C 1.38631 * 120.00293 * 174.51557 * 17 16 15 20 20 N 1.31575 * 120.00136 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99883 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47252 * 60.00088 * 21 19 17 23 23 H 1.48502 * 109.46840 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46953 * 299.99672 * 21 19 17 25 25 H 1.09004 * 109.47107 * 299.99124 * 1 2 3 26 26 H 1.08994 * 109.47468 * 60.00071 * 1 2 3 27 27 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47607 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47322 * 300.00656 * 3 2 1 30 30 H 1.09010 * 109.46900 * 59.99977 * 3 2 1 31 31 H 0.96999 * 120.00257 * 5.61533 * 8 6 2 32 32 H 1.07999 * 119.99320 * 359.97438 * 10 9 8 33 33 H 1.08001 * 119.91611 * 180.02562 * 11 10 9 34 34 H 1.07998 * 120.01520 * 180.02562 * 14 12 11 35 35 H 0.96992 * 119.99844 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3993 -1.2293 -2.1296 6 6 2.0323 -0.7105 1.2304 7 8 2.7297 -1.6967 1.1190 8 7 1.7068 -0.2501 2.4545 9 6 2.2676 -0.8378 3.5958 10 6 3.5649 -1.3273 3.5596 11 6 4.1172 -1.9063 4.6863 12 6 3.3780 -2.0004 5.8544 13 9 3.9228 -2.5679 6.9527 14 6 2.0831 -1.5155 5.8983 15 6 1.5223 -0.9330 4.7710 16 8 0.2538 -0.4509 4.8133 17 6 -0.4492 -0.6760 5.9414 18 1 -0.0320 -1.2933 6.7234 19 6 -1.7073 -0.1153 6.0977 20 7 -2.2153 0.6371 5.1453 21 14 -2.6816 -0.4279 7.6606 22 1 -1.9168 0.0755 8.8296 23 1 -3.9856 0.2780 7.5804 24 1 -2.9172 -1.8861 7.8137 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.0842 0.4881 2.5453 32 1 4.1436 -1.2559 2.6506 33 1 5.1276 -2.2865 4.6562 34 1 1.5091 -1.5897 6.8102 35 1 -3.0957 1.0291 5.2545 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120532559.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:03 Heat of formation + Delta-G solvation = -57.150047 kcal Electronic energy + Delta-G solvation = -22846.514236 eV Core-core repulsion = 19146.160752 eV Total energy + Delta-G solvation = -3700.353483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.32860 -40.62706 -39.00900 -37.02458 -36.26156 -34.82598 -33.86403 -32.48641 -29.54065 -28.40052 -27.63364 -25.60135 -24.48904 -22.78680 -21.91330 -20.47546 -18.57432 -18.41901 -17.46063 -16.75260 -16.20906 -15.63018 -15.32057 -15.04232 -14.96642 -14.51687 -14.36224 -13.89209 -13.74188 -13.65076 -13.55991 -13.31307 -12.85129 -12.57553 -12.38279 -12.28469 -12.22093 -12.18373 -11.74723 -11.71583 -11.48201 -11.35376 -11.03613 -10.80519 -10.61329 -9.91630 -9.86322 -9.50565 -9.02780 -7.99543 -7.23912 -6.68337 -4.25744 1.66161 2.02627 2.50191 2.60672 2.82163 3.03884 3.03996 3.06559 3.39112 3.68729 3.79154 4.22888 4.52578 4.62229 4.71659 4.77130 4.88294 5.01979 5.34392 5.42657 5.46951 5.53941 5.55396 5.66803 5.83428 5.92129 6.00574 6.09390 6.40593 6.65102 6.82012 6.82857 6.90420 7.08938 7.46211 7.52614 7.69091 7.76224 8.28260 8.77942 9.36645 10.48443 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.005687 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.164121 B = 4922.549464 C = 6809.709585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.021 3.979 3 C -0.143 4.143 4 C 0.233 3.767 5 N -0.419 5.419 6 C 0.523 3.477 7 O -0.523 6.523 8 N -0.638 5.638 9 C 0.056 3.944 10 C -0.046 4.046 11 C -0.229 4.229 12 C 0.134 3.866 13 F -0.150 7.150 14 C -0.258 4.258 15 C 0.161 3.839 16 O -0.166 6.166 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.046 3.954 20 N -0.858 5.858 21 Si 0.941 3.059 22 H -0.268 1.268 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.417 0.583 32 H 0.135 0.865 33 H 0.124 0.876 34 H 0.144 0.856 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 3.845 -4.227 6.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.201 4.201 4 C -0.087 4.087 5 N -0.093 5.093 6 C 0.307 3.693 7 O -0.399 6.399 8 N -0.283 5.283 9 C -0.038 4.038 10 C -0.067 4.067 11 C -0.249 4.249 12 C 0.114 3.886 13 F -0.129 7.129 14 C -0.279 4.279 15 C 0.105 3.895 16 O -0.068 6.068 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.160 4.160 20 N -0.491 5.491 21 Si 0.766 3.234 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.194 1.194 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.255 0.745 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.162 0.838 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.493 2.601 -5.922 7.875 hybrid contribution -0.859 0.166 1.524 1.757 sum 3.634 2.767 -4.398 6.341 Atomic orbital electron populations 1.21978 0.88828 1.04639 1.04952 1.18323 0.98800 0.95760 0.85697 1.21943 1.02556 0.90798 1.04792 1.28081 0.93409 0.93412 0.93767 1.81141 1.08089 1.07879 1.12205 1.19902 0.81200 0.84233 0.83958 1.90758 1.37910 1.24980 1.86284 1.42967 1.46113 1.35898 1.03300 1.16762 0.92863 1.08954 0.85200 1.20455 0.92039 0.96376 0.97788 1.20455 1.01208 1.10802 0.92473 1.17466 0.92054 0.96266 0.82804 1.91420 1.86008 1.82766 1.52692 1.20879 0.95498 1.10595 1.00904 1.18783 0.85754 0.93222 0.91732 1.83916 1.17797 1.66002 1.39118 1.21294 0.98332 1.31962 0.95238 0.88870 1.25262 0.96178 0.95411 0.99150 1.69977 1.17488 1.29543 1.32130 0.85757 0.78661 0.79086 0.79933 1.19318 1.20136 1.19352 0.88941 0.90294 0.90840 0.91010 0.90208 0.89387 0.74532 0.84752 0.85839 0.83841 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.32 37.16 0.31 -1.15 16 2 C 0.02 0.24 0.80 -158.45 -0.13 0.12 16 3 C -0.14 -1.18 8.33 37.15 0.31 -0.87 16 4 C 0.23 3.29 13.09 -20.76 -0.27 3.02 16 5 N -0.42 -6.83 18.54 42.15 0.78 -6.05 16 6 C 0.52 8.04 6.19 -10.99 -0.07 7.98 16 7 O -0.52 -9.94 13.79 5.54 0.08 -9.86 16 8 N -0.64 -10.21 4.98 -9.72 -0.05 -10.26 16 9 C 0.06 1.06 6.28 -83.45 -0.52 0.54 16 10 C -0.05 -0.83 8.65 -39.43 -0.34 -1.17 16 11 C -0.23 -4.03 10.02 -39.48 -0.40 -4.43 16 12 C 0.13 2.54 7.29 -39.43 -0.29 2.26 16 13 F -0.15 -2.75 17.26 2.25 0.04 -2.72 16 14 C -0.26 -5.31 9.11 -39.36 -0.36 -5.67 16 15 C 0.16 3.46 6.66 -38.94 -0.26 3.20 16 16 O -0.17 -4.01 9.30 0.04 0.00 -4.01 16 17 C -0.39 -9.76 9.44 30.88 0.29 -9.47 16 18 H 0.09 2.19 5.30 -52.48 -0.28 1.91 16 19 C 0.05 1.11 5.49 -17.52 -0.10 1.02 16 20 N -0.86 -21.92 13.67 55.48 0.76 -21.16 16 21 Si 0.94 18.75 29.55 -169.99 -5.02 13.73 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H 0.09 0.90 7.45 -51.93 -0.39 0.51 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.63 7.70 -51.92 -0.40 0.23 16 31 H 0.42 6.06 7.42 -40.82 -0.30 5.75 16 32 H 0.13 2.30 6.48 -52.49 -0.34 1.96 16 33 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.14 2.96 5.71 -52.49 -0.30 2.66 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -29.69 317.09 -3.71 -33.40 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.26 Total: 6.79 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.82 Total: -4.64 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 1.49 Total: -37.47 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.69 -3.71 -33.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120532559.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.751 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds