Wall clock time and date at job start Tue Mar 31 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37477 * 122.44627 * 2 1 4 4 C 1.36654 * 113.29614 * 180.21146 * 3 2 1 5 5 C 1.46583 * 125.45864 * 179.77093 * 4 3 2 6 6 O 1.21697 * 119.99611 * 352.13403 * 5 4 3 7 7 N 1.34769 * 119.99952 * 172.14081 * 5 4 3 8 8 C 1.46505 * 120.00220 * 1.91647 * 7 5 4 9 9 C 1.50698 * 109.47149 * 82.20595 * 8 7 5 10 10 H 1.07999 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99935 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00145 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46998 * 90.00228 * 13 11 9 15 15 H 1.48498 * 109.47367 * 210.00455 * 13 11 9 16 16 H 1.48501 * 109.46814 * 330.00456 * 13 11 9 17 17 C 1.46500 * 119.99972 * 181.91705 * 7 5 4 18 18 C 1.53003 * 109.47273 * 85.08817 * 17 7 5 19 19 C 1.47193 * 109.47268 * 180.02562 * 18 17 7 20 20 N 9.13306 * 143.95154 * 18.10142 * 2 1 3 21 21 S 1.75830 * 109.08076 * 359.65976 * 4 3 2 22 22 C 1.33816 * 122.45425 * 179.97438 * 2 1 3 23 23 C 1.50697 * 124.51944 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47465 * 90.02462 * 1 2 3 25 25 H 1.09001 * 109.46985 * 210.02263 * 1 2 3 26 26 H 1.08996 * 109.47314 * 330.01903 * 1 2 3 27 27 H 1.08001 * 123.35473 * 359.94546 * 3 2 1 28 28 H 1.08998 * 109.47246 * 202.20597 * 8 7 5 29 29 H 1.08997 * 109.46811 * 322.20450 * 8 7 5 30 30 H 0.97000 * 119.99534 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47055 * 205.09065 * 17 7 5 32 32 H 1.08998 * 109.46852 * 325.08742 * 17 7 5 33 33 H 1.08998 * 109.46772 * 300.00013 * 18 17 7 34 34 H 1.08993 * 109.46802 * 60.00132 * 18 17 7 35 35 H 1.09004 * 109.47118 * 90.00533 * 23 22 2 36 36 H 1.09001 * 109.47729 * 210.00186 * 23 22 2 37 37 H 1.09004 * 109.47561 * 330.00605 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2445 1.1602 0.0000 4 6 3.5936 0.9429 -0.0046 5 6 4.6230 1.9864 -0.0105 6 8 4.3065 3.1525 -0.1559 7 7 5.9199 1.6545 0.1448 8 6 6.3051 0.2472 0.2776 9 6 6.3961 -0.3798 -1.0897 10 1 6.1874 0.2107 -1.9696 11 6 6.7447 -1.7076 -1.2174 12 7 6.8246 -2.2547 -2.4107 13 14 7.1050 -2.7292 0.3045 14 1 5.8502 -3.3618 0.7844 15 1 8.0947 -3.7844 -0.0305 16 1 7.6565 -1.8534 1.3694 17 6 6.9446 2.7009 0.1810 18 6 7.0672 3.2457 1.6055 19 6 8.0962 4.2975 1.6418 20 7 8.8912 5.1085 1.6699 21 16 3.8969 -0.7891 0.0009 22 6 2.2250 -1.1292 0.0005 23 6 1.6356 -2.5161 0.0017 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8901 0.5135 27 1 1.8018 2.1453 -0.0009 28 1 7.2738 0.1808 0.7729 29 1 5.5573 -0.2798 0.8700 30 1 7.0702 -3.1887 -2.5005 31 1 7.9015 2.2834 -0.1319 32 1 6.6626 3.5090 -0.4940 33 1 6.1102 3.6632 1.9184 34 1 7.3491 2.4376 2.2804 35 1 1.4931 -2.8512 -1.0257 36 1 2.3126 -3.1983 0.5157 37 1 0.6745 -2.5020 0.5158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121208811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:34 Heat of formation + Delta-G solvation = 18.613255 kcal Electronic energy + Delta-G solvation = -21011.871454 eV Core-core repulsion = 17881.016490 eV Total energy + Delta-G solvation = -3130.854964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45049 -37.80715 -36.68324 -35.37770 -33.15988 -32.05646 -31.08212 -29.20857 -28.10203 -26.00009 -24.00052 -23.01553 -22.02428 -19.16619 -17.78091 -17.65599 -17.29662 -17.10537 -15.76836 -15.42103 -14.76388 -14.66719 -14.30323 -14.04255 -13.95949 -13.37923 -13.15636 -12.81202 -12.67330 -12.66016 -12.58235 -12.40603 -12.22394 -12.05110 -11.81330 -11.42061 -11.29875 -11.21825 -11.13628 -10.89452 -10.67584 -10.50603 -9.90507 -9.41876 -9.40110 -9.02866 -8.23347 -7.82862 -7.57362 -6.46023 -4.43148 1.22098 2.33856 2.74488 2.83343 2.86625 2.92697 3.00720 3.07241 3.13345 3.50110 3.82080 4.03504 4.26806 4.84296 5.04566 5.20081 5.28355 5.33478 5.52897 5.54832 5.61015 5.73176 5.79920 5.93349 5.94474 6.02037 6.05693 6.12145 6.13571 6.28002 6.32904 6.52572 6.90631 7.02674 7.07784 7.08267 7.62413 7.83422 8.11142 8.59868 8.71345 9.07966 10.64934 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.007372 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.176878 B = 3797.261856 C = 5585.532711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.142 4.142 3 C -0.069 4.069 4 C -0.286 4.286 5 C 0.598 3.402 6 O -0.557 6.557 7 N -0.593 5.593 8 C 0.196 3.804 9 C -0.539 4.539 10 H 0.089 0.911 11 C 0.091 3.909 12 N -0.869 5.869 13 Si 0.844 3.156 14 H -0.262 1.262 15 H -0.275 1.275 16 H -0.257 1.257 17 C 0.129 3.871 18 C -0.047 4.047 19 C 0.220 3.780 20 N -0.447 5.447 21 S 0.359 5.641 22 C -0.285 4.285 23 C -0.078 4.078 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.137 0.863 28 H 0.053 0.947 29 H 0.034 0.966 30 H 0.272 0.728 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -0.892 7.567 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.154 4.154 3 C -0.103 4.103 4 C -0.408 4.408 5 C 0.388 3.612 6 O -0.438 6.438 7 N -0.323 5.323 8 C 0.072 3.928 9 C -0.581 4.581 10 H 0.107 0.893 11 C -0.116 4.116 12 N -0.505 5.505 13 Si 0.669 3.331 14 H -0.187 1.187 15 H -0.201 1.201 16 H -0.181 1.181 17 C 0.004 3.996 18 C -0.089 4.089 19 C -0.098 4.098 20 N -0.124 5.124 21 S 0.637 5.363 22 C -0.404 4.404 23 C -0.136 4.136 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.658 -0.230 7.440 8.781 hybrid contribution -1.412 -0.259 0.490 1.517 sum -6.070 -0.489 7.930 9.998 Atomic orbital electron populations 1.20411 0.91263 1.01603 1.01356 1.18348 0.96593 0.91562 1.08915 1.20250 0.91111 0.98832 1.00137 1.24393 0.97332 0.98605 1.20421 1.16994 0.81613 0.87034 0.75604 1.90730 1.81835 1.19278 1.51961 1.47681 1.05204 1.08078 1.71295 1.20159 0.96423 0.77362 0.98809 1.21373 1.48192 0.96498 0.92000 0.89344 1.24802 0.93882 0.97249 0.95713 1.69858 1.44866 1.13641 1.22086 0.87268 0.80062 0.81641 0.84113 1.18655 1.20060 1.18108 1.21158 0.92927 0.91808 0.93686 1.19795 0.94511 0.93127 1.01450 1.29038 0.93790 0.93930 0.93029 1.81192 1.11219 1.11264 1.08729 1.85327 0.94245 0.96225 1.60524 1.25417 1.06439 0.99300 1.09229 1.20237 1.00128 0.91043 1.02145 0.92212 0.92280 0.92336 0.84537 0.92913 0.94983 0.91808 0.88901 0.89528 0.86996 0.87167 0.91284 0.92012 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.84 36.00 0.35 -0.76 16 2 C -0.14 -2.31 5.78 -106.46 -0.62 -2.93 16 3 C -0.07 -1.22 9.80 -40.43 -0.40 -1.61 16 4 C -0.29 -5.54 6.23 -36.79 -0.23 -5.77 16 5 C 0.60 11.83 7.53 -12.90 -0.10 11.74 16 6 O -0.56 -11.82 16.50 5.19 0.09 -11.73 16 7 N -0.59 -10.73 2.49 -176.64 -0.44 -11.17 16 8 C 0.20 3.77 3.79 -5.19 -0.02 3.75 16 9 C -0.54 -12.50 7.51 -34.44 -0.26 -12.76 16 10 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 11 C 0.09 2.17 5.08 -17.82 -0.09 2.08 16 12 N -0.87 -22.75 13.96 55.43 0.77 -21.98 16 13 Si 0.84 17.17 26.79 -169.99 -4.55 12.62 16 14 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 15 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.26 -4.83 6.54 56.52 0.37 -4.46 16 17 C 0.13 1.93 5.30 -4.04 -0.02 1.91 16 18 C -0.05 -0.56 5.99 -29.52 -0.18 -0.74 16 19 C 0.22 2.97 15.43 -20.76 -0.32 2.65 16 20 N -0.45 -7.11 18.54 42.15 0.78 -6.33 16 21 S 0.36 6.80 15.14 -107.50 -1.63 5.17 16 22 C -0.28 -4.79 6.28 -35.86 -0.23 -5.01 16 23 C -0.08 -1.06 9.98 36.00 0.36 -0.70 16 24 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.05 0.94 7.07 -51.93 -0.37 0.58 16 29 H 0.03 0.63 3.94 -22.35 -0.09 0.54 16 30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 31 H 0.09 1.32 8.03 -51.93 -0.42 0.90 16 32 H 0.09 1.36 7.55 -51.93 -0.39 0.97 16 33 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.77 6.57 -51.93 -0.34 0.43 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -27.97 325.68 -6.30 -34.28 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.49 Total: 2.39 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.74 Total: -8.17 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.12 Total: -39.47 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -4.55 Total: 12.62 kcal Atomic # 16 Polarization: 6.80 SS G_CDS: -1.63 Total: 5.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.97 -6.30 -34.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121208811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.889 kcal (2) G-P(sol) polarization free energy of solvation -27.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds