Wall clock time and date at job start Tue Mar 31 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37477 * 122.44627 * 2 1 4 4 C 1.36654 * 113.29614 * 180.21146 * 3 2 1 5 5 C 1.46583 * 125.45864 * 179.77093 * 4 3 2 6 6 O 1.21697 * 119.99611 * 352.13403 * 5 4 3 7 7 N 1.34769 * 119.99952 * 172.14081 * 5 4 3 8 8 C 1.46505 * 120.00220 * 1.91647 * 7 5 4 9 9 C 1.50698 * 109.47149 * 82.20595 * 8 7 5 10 10 H 1.07999 * 119.99889 * 359.97438 * 9 8 7 11 11 C 1.37870 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99935 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 120.00145 * 359.97438 * 11 9 8 14 14 H 1.48495 * 109.46998 * 90.00228 * 13 11 9 15 15 H 1.48498 * 109.47367 * 210.00455 * 13 11 9 16 16 H 1.48501 * 109.46814 * 330.00456 * 13 11 9 17 17 C 1.46500 * 119.99972 * 181.91705 * 7 5 4 18 18 C 1.53003 * 109.47273 * 85.08817 * 17 7 5 19 19 C 1.47193 * 109.47268 * 180.02562 * 18 17 7 20 20 N 9.13306 * 143.95154 * 18.10142 * 2 1 3 21 21 S 1.75830 * 109.08076 * 359.65976 * 4 3 2 22 22 C 1.33816 * 122.45425 * 179.97438 * 2 1 3 23 23 C 1.50697 * 124.51944 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47465 * 90.02462 * 1 2 3 25 25 H 1.09001 * 109.46985 * 210.02263 * 1 2 3 26 26 H 1.08996 * 109.47314 * 330.01903 * 1 2 3 27 27 H 1.08001 * 123.35473 * 359.94546 * 3 2 1 28 28 H 1.08998 * 109.47246 * 202.20597 * 8 7 5 29 29 H 1.08997 * 109.46811 * 322.20450 * 8 7 5 30 30 H 0.97000 * 119.99534 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.47055 * 205.09065 * 17 7 5 32 32 H 1.08998 * 109.46852 * 325.08742 * 17 7 5 33 33 H 1.08998 * 109.46772 * 300.00013 * 18 17 7 34 34 H 1.08993 * 109.46802 * 60.00132 * 18 17 7 35 35 H 1.09004 * 109.47118 * 90.00533 * 23 22 2 36 36 H 1.09001 * 109.47729 * 210.00186 * 23 22 2 37 37 H 1.09004 * 109.47561 * 330.00605 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2445 1.1602 0.0000 4 6 3.5936 0.9429 -0.0046 5 6 4.6230 1.9864 -0.0105 6 8 4.3065 3.1525 -0.1559 7 7 5.9199 1.6545 0.1448 8 6 6.3051 0.2472 0.2776 9 6 6.3961 -0.3798 -1.0897 10 1 6.1874 0.2107 -1.9696 11 6 6.7447 -1.7076 -1.2174 12 7 6.8246 -2.2547 -2.4107 13 14 7.1050 -2.7292 0.3045 14 1 5.8502 -3.3618 0.7844 15 1 8.0947 -3.7844 -0.0305 16 1 7.6565 -1.8534 1.3694 17 6 6.9446 2.7009 0.1810 18 6 7.0672 3.2457 1.6055 19 6 8.0962 4.2975 1.6418 20 7 8.8912 5.1085 1.6699 21 16 3.8969 -0.7891 0.0009 22 6 2.2250 -1.1292 0.0005 23 6 1.6356 -2.5161 0.0017 24 1 -0.3634 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8901 0.5135 27 1 1.8018 2.1453 -0.0009 28 1 7.2738 0.1808 0.7729 29 1 5.5573 -0.2798 0.8700 30 1 7.0702 -3.1887 -2.5005 31 1 7.9015 2.2834 -0.1319 32 1 6.6626 3.5090 -0.4940 33 1 6.1102 3.6632 1.9184 34 1 7.3491 2.4376 2.2804 35 1 1.4931 -2.8512 -1.0257 36 1 2.3126 -3.1983 0.5157 37 1 0.6745 -2.5020 0.5158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121208811.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:33 Heat of formation + Delta-G solvation = 3.189316 kcal Electronic energy + Delta-G solvation = -21012.540286 eV Core-core repulsion = 17881.016490 eV Total energy + Delta-G solvation = -3131.523796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92402 -39.12397 -37.88886 -36.87304 -34.79594 -33.43917 -32.34912 -30.36034 -29.68143 -27.24807 -25.25033 -24.66819 -23.37376 -20.56022 -19.26776 -19.06503 -18.74032 -18.48867 -17.18424 -16.75836 -16.32176 -15.84715 -15.77267 -15.40000 -15.15088 -14.75925 -14.56770 -14.34906 -13.99987 -13.89569 -13.65369 -13.60449 -13.55795 -13.18100 -13.07815 -12.78044 -12.68009 -12.49401 -12.40070 -12.23776 -12.05596 -11.86342 -11.70672 -10.96705 -10.79190 -10.79008 -9.72614 -9.21211 -9.01288 -8.27785 -6.28733 -0.19491 0.89042 1.41639 1.43518 1.46881 1.52495 1.54874 1.65768 1.78026 2.14071 2.35363 2.36974 3.07773 3.14519 3.71872 4.07737 4.09345 4.15664 4.40364 4.47263 4.50047 4.57203 4.68769 4.75440 4.77992 4.79247 4.82764 4.96141 5.00916 5.09711 5.18371 5.22907 5.35905 5.58007 5.65026 5.80568 6.15083 6.46302 6.54413 6.69969 7.17257 7.28625 8.87446 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.007372 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.176878 B = 3797.261856 C = 5585.532711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.146 4.146 3 C -0.066 4.066 4 C -0.310 4.310 5 C 0.592 3.408 6 O -0.579 6.579 7 N -0.590 5.590 8 C 0.199 3.801 9 C -0.533 4.533 10 H 0.036 0.964 11 C 0.047 3.953 12 N -0.926 5.926 13 Si 0.891 3.109 14 H -0.247 1.247 15 H -0.285 1.285 16 H -0.224 1.224 17 C 0.123 3.877 18 C -0.031 4.031 19 C 0.245 3.755 20 N -0.489 5.489 21 S 0.310 5.690 22 C -0.275 4.275 23 C -0.080 4.080 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.270 0.730 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.429 -1.688 9.987 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.157 4.157 3 C -0.102 4.102 4 C -0.430 4.430 5 C 0.382 3.618 6 O -0.463 6.463 7 N -0.319 5.319 8 C 0.075 3.925 9 C -0.574 4.574 10 H 0.055 0.945 11 C -0.155 4.155 12 N -0.564 5.564 13 Si 0.713 3.287 14 H -0.170 1.170 15 H -0.211 1.211 16 H -0.147 1.147 17 C -0.001 4.001 18 C -0.072 4.072 19 C -0.072 4.072 20 N -0.167 5.167 21 S 0.587 5.413 22 C -0.395 4.395 23 C -0.138 4.138 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.162 0.838 28 H 0.095 0.905 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.060 -0.996 9.879 11.633 hybrid contribution -1.142 0.043 -0.349 1.195 sum -7.203 -0.953 9.530 11.984 Atomic orbital electron populations 1.20496 0.88258 1.03338 1.02363 1.18744 0.98712 0.90648 1.07605 1.20570 0.90828 0.99921 0.98846 1.24494 0.97977 0.98478 1.22072 1.17179 0.82278 0.86907 0.75407 1.90705 1.82263 1.20030 1.53290 1.47684 1.05290 1.08308 1.70644 1.20105 0.97968 0.77701 0.96714 1.21320 1.47627 0.96193 0.92257 0.94532 1.25470 0.93528 0.98220 0.98259 1.70012 1.47565 1.13997 1.24824 0.86496 0.80436 0.80358 0.81444 1.17048 1.21055 1.14684 1.21298 0.92303 0.90866 0.95647 1.19726 0.94377 0.93401 0.99735 1.29169 0.93054 0.93251 0.91728 1.81224 1.12723 1.12663 1.10061 1.85219 0.96943 0.96681 1.62455 1.25657 1.04692 1.01158 1.07977 1.20385 1.01442 0.89052 1.02942 0.91448 0.90311 0.90959 0.83773 0.90461 0.93607 0.92033 0.88185 0.90872 0.86327 0.84057 0.90823 0.91482 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.84 71.23 0.70 -1.17 16 2 C -0.15 -4.40 5.78 -21.05 -0.12 -4.52 16 3 C -0.07 -2.27 9.80 21.72 0.21 -2.06 16 4 C -0.31 -11.85 6.23 24.08 0.15 -11.70 16 5 C 0.59 23.39 7.53 86.42 0.65 24.04 16 6 O -0.58 -24.66 16.50 -4.34 -0.07 -24.73 16 7 N -0.59 -21.02 2.49 -830.99 -2.07 -23.09 16 8 C 0.20 7.41 3.79 85.63 0.32 7.74 16 9 C -0.53 -25.20 7.51 25.60 0.19 -25.01 16 10 H 0.04 2.07 8.06 -2.91 -0.02 2.05 16 11 C 0.05 2.28 5.08 84.65 0.43 2.71 16 12 N -0.93 -50.22 13.96 21.45 0.30 -49.92 16 13 Si 0.89 34.14 26.79 68.60 1.84 35.98 16 14 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 15 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.22 -7.36 6.54 99.48 0.65 -6.71 16 17 C 0.12 3.57 5.30 86.38 0.46 4.02 16 18 C -0.03 -0.67 5.99 28.79 0.17 -0.50 16 19 C 0.25 6.23 15.43 89.44 1.38 7.61 16 20 N -0.49 -15.13 18.54 20.00 0.37 -14.76 16 21 S 0.31 11.53 15.14 -56.49 -0.86 10.67 16 22 C -0.28 -8.69 6.28 24.68 0.15 -8.53 16 23 C -0.08 -1.96 9.98 71.23 0.71 -1.24 16 24 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 25 H 0.08 1.41 6.54 -2.39 -0.02 1.39 16 26 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 27 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.08 2.53 7.07 -2.39 -0.02 2.52 16 29 H 0.05 1.68 3.94 -21.20 -0.08 1.60 16 30 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.10 2.74 8.03 -2.39 -0.02 2.72 16 32 H 0.07 2.32 7.55 -2.39 -0.02 2.30 16 33 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.78 6.57 -2.39 -0.02 1.77 16 Total: -1.00 -63.01 325.68 5.89 -57.12 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.96 Total: 17.34 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.42 Total: -8.61 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -1.40 Total: -87.77 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.07 Total: -24.73 kcal Atomic # 14 Polarization: 34.14 SS G_CDS: 1.84 Total: 35.98 kcal Atomic # 16 Polarization: 11.53 SS G_CDS: -0.86 Total: 10.67 kcal Total: -63.01 5.89 -57.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121208811.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.312 kcal (2) G-P(sol) polarization free energy of solvation -63.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds