Wall clock time and date at job start Tue Mar 31 2020 06:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 N 1.46501 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99840 * 269.99415 * 4 3 2 6 6 H 1.08006 * 119.99872 * 146.17471 * 5 4 3 7 7 C 1.38813 * 120.00512 * 326.17772 * 5 4 3 8 8 N 1.31617 * 119.99470 * 336.52469 * 7 5 4 9 9 Si 1.86791 * 120.00125 * 156.52166 * 7 5 4 10 10 H 1.48508 * 109.47069 * 90.00250 * 9 7 5 11 11 H 1.48500 * 109.47445 * 210.00199 * 9 7 5 12 12 H 1.48496 * 109.47471 * 330.00133 * 9 7 5 13 13 C 1.46496 * 120.00028 * 90.00857 * 4 3 2 14 14 C 1.50694 * 109.47823 * 89.32311 * 13 4 3 15 15 C 1.34474 * 126.05373 * 94.71178 * 14 13 4 16 16 O 1.34903 * 107.33325 * 180.26784 * 15 14 13 17 17 C 1.34535 * 107.68264 * 359.97438 * 16 15 14 18 18 C 1.47016 * 125.76510 * 180.02562 * 17 16 15 19 19 C 1.36180 * 125.33233 * 359.97438 * 18 17 16 20 20 C 1.37728 * 114.44293 * 179.97438 * 19 18 17 21 21 C 1.33717 * 115.19391 * 0.02562 * 20 19 18 22 22 S 1.75827 * 109.96143 * 359.76834 * 21 20 19 23 23 N 1.31525 * 108.47486 * 0.02562 * 17 16 15 24 24 H 1.08990 * 109.47453 * 59.99692 * 1 2 3 25 25 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46402 * 299.99445 * 1 2 3 27 27 H 1.09005 * 109.46660 * 240.00070 * 2 1 3 28 28 H 1.09000 * 109.47552 * 120.00500 * 2 1 3 29 29 H 1.09000 * 109.46538 * 60.00613 * 3 2 1 30 30 H 1.08994 * 109.47107 * 299.99995 * 3 2 1 31 31 H 0.97005 * 119.99584 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46791 * 329.31801 * 13 4 3 33 33 H 1.09004 * 109.47131 * 209.32405 * 13 4 3 34 34 H 1.07995 * 126.33712 * 0.22787 * 15 14 13 35 35 H 1.07994 * 122.77520 * 359.97438 * 19 18 17 36 36 H 1.07997 * 122.40379 * 179.97438 * 20 19 18 37 37 H 1.07997 * 125.02107 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 5.1332 0.9214 1.2638 7 6 3.6730 2.1113 2.2857 8 7 2.8176 3.0968 2.1145 9 14 4.1908 1.6130 4.0099 10 1 5.3894 2.3925 4.4115 11 1 3.0816 1.8867 4.9585 12 1 4.5132 0.1636 4.0305 13 6 4.2370 1.4426 -1.2696 14 6 4.4737 2.8633 -1.7129 15 6 5.5789 3.5922 -1.4771 16 8 5.3865 4.8056 -2.0343 17 6 4.1679 4.8050 -2.6043 18 6 3.5557 5.9308 -3.3249 19 6 4.1346 7.1474 -3.5226 20 6 3.3592 8.0392 -4.2301 21 6 2.1640 7.5766 -4.6115 22 16 1.9634 5.9152 -4.0721 23 7 3.6166 3.6271 -2.4080 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 2.4558 3.5642 2.8837 32 1 3.6529 0.9185 -2.0261 33 1 5.1947 0.9392 -1.1368 34 1 6.4577 3.2668 -0.9403 35 1 5.1200 7.3927 -3.1551 36 1 3.6923 9.0406 -4.4596 37 1 1.4316 8.1391 -5.1714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122984801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:39 Heat of formation + Delta-G solvation = 73.347520 kcal Electronic energy + Delta-G solvation = -20711.464121 eV Core-core repulsion = 17582.982614 eV Total energy + Delta-G solvation = -3128.481508 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.52194 -37.61517 -36.27584 -34.14412 -32.42104 -31.80717 -30.60458 -28.29287 -25.84659 -25.52254 -24.45377 -22.25395 -21.61540 -20.86208 -19.91351 -18.69185 -17.77498 -16.74230 -16.05555 -15.99416 -15.42653 -14.88771 -14.08809 -13.93994 -13.80781 -13.43554 -13.15856 -13.01761 -12.80159 -12.68922 -12.22157 -12.15588 -11.44289 -11.27118 -10.96865 -10.82862 -10.77121 -10.64551 -10.55835 -10.33412 -10.04694 -9.93590 -9.82608 -9.45623 -9.23156 -8.50917 -8.48736 -7.67616 -6.67020 -5.80295 -3.35447 0.57908 1.43059 2.00198 2.16610 2.78640 3.33041 3.37858 3.41716 3.43766 3.55027 4.37713 4.47099 4.99633 5.27632 5.33493 5.50280 5.55160 5.64561 5.71531 5.92652 5.96253 6.00712 6.08239 6.28058 6.29473 6.36870 6.46690 6.59869 6.63359 6.67342 6.68760 6.91514 7.00557 7.01512 7.35315 7.74815 7.87571 8.34832 8.46817 9.14985 9.78298 10.35757 11.18014 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016965 B = 0.004630 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.045049 B = 6045.844010 C = 6669.882962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.143 3.857 4 N -0.570 5.570 5 C -0.264 4.264 6 H 0.064 0.936 7 C 0.013 3.987 8 N -0.878 5.878 9 Si 0.895 3.105 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.214 3.786 14 C 0.004 3.996 15 C -0.068 4.068 16 O -0.202 6.202 17 C 0.224 3.776 18 C -0.106 4.106 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.232 4.232 22 S 0.205 5.795 23 N -0.450 5.450 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.028 0.972 31 H 0.254 0.746 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.212 0.788 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 5.467 -11.944 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.017 3.983 4 N -0.288 5.288 5 C -0.393 4.393 6 H 0.082 0.918 7 C -0.188 4.188 8 N -0.520 5.520 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.086 3.914 14 C -0.121 4.121 15 C -0.140 4.140 16 O -0.089 6.089 17 C 0.020 3.980 18 C -0.225 4.225 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.369 4.369 22 S 0.470 5.530 23 N -0.181 5.181 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.228 0.772 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.795 4.347 -12.159 13.036 hybrid contribution 2.112 1.267 1.601 2.938 sum 0.317 5.613 -10.557 11.961 Atomic orbital electron populations 1.21686 0.97560 0.99858 1.01114 1.22037 0.93648 1.01495 1.00542 1.21048 0.82767 0.92355 1.02117 1.44072 1.01397 1.83455 0.99885 1.19083 1.06415 1.26616 0.87234 0.91826 1.25134 0.99702 0.94968 0.98989 1.70034 1.33140 1.19331 1.29454 0.86430 0.77765 0.78705 0.84670 1.21341 1.21481 1.20210 1.19531 0.96947 0.85758 0.89176 1.23397 0.89335 1.02074 0.97274 1.24833 1.03372 0.82015 1.03739 1.84434 1.33659 1.35278 1.55522 1.22187 0.82597 0.93412 0.99823 1.21473 0.99696 0.94275 1.07023 1.20603 1.01894 0.91515 1.01140 1.19910 0.94140 1.01166 1.01156 1.25992 1.02226 0.99838 1.08829 1.84475 1.11639 1.08430 1.48412 1.70678 1.30385 1.00975 1.16094 0.93577 0.94175 0.93186 0.94102 0.92543 0.88658 0.95384 0.93545 0.92726 0.91789 0.77189 0.83745 0.83991 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.16 16 2 C -0.14 -2.83 6.26 -26.73 -0.17 -2.99 16 3 C 0.14 3.46 5.30 -4.04 -0.02 3.43 16 4 N -0.57 -14.06 2.44 -174.61 -0.43 -14.48 16 5 C -0.26 -6.98 9.48 -15.06 -0.14 -7.12 16 6 H 0.06 1.64 7.93 -52.48 -0.42 1.22 16 7 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 8 N -0.88 -25.38 11.34 55.49 0.63 -24.75 16 9 Si 0.90 21.26 29.61 -169.99 -5.03 16.23 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.21 4.55 6.20 -5.20 -0.03 4.52 16 14 C 0.00 0.10 6.68 -82.88 -0.55 -0.46 16 15 C -0.07 -1.34 12.08 29.40 0.36 -0.99 16 16 O -0.20 -4.03 10.79 3.40 0.04 -3.99 16 17 C 0.22 4.50 8.09 -14.13 -0.11 4.38 16 18 C -0.11 -1.76 6.46 -36.77 -0.24 -2.00 16 19 C -0.12 -1.62 10.15 -40.51 -0.41 -2.03 16 20 C -0.13 -1.48 10.15 -41.35 -0.42 -1.90 16 21 C -0.23 -2.49 11.21 29.15 0.33 -2.16 16 22 S 0.21 2.86 23.30 -107.50 -2.50 0.35 16 23 N -0.45 -9.88 11.33 -8.13 -0.09 -9.97 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.10 2.62 5.33 -51.93 -0.28 2.34 16 30 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 34 H 0.21 3.47 8.06 -52.49 -0.42 3.05 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -31.09 335.71 -8.36 -39.44 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.89 Total: 1.33 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.14 Total: -9.20 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.11 Total: -49.21 kcal Atomic # 8 Polarization: -4.03 SS G_CDS: 0.04 Total: -3.99 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -2.50 Total: 0.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.09 -8.36 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122984801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.789 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds