Wall clock time and date at job start Tue Mar 31 2020 06:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47320 * 2 1 4 4 N 1.46501 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.99840 * 269.99415 * 4 3 2 6 6 H 1.08006 * 119.99872 * 146.17471 * 5 4 3 7 7 C 1.38813 * 120.00512 * 326.17772 * 5 4 3 8 8 N 1.31617 * 119.99470 * 336.52469 * 7 5 4 9 9 Si 1.86791 * 120.00125 * 156.52166 * 7 5 4 10 10 H 1.48508 * 109.47069 * 90.00250 * 9 7 5 11 11 H 1.48500 * 109.47445 * 210.00199 * 9 7 5 12 12 H 1.48496 * 109.47471 * 330.00133 * 9 7 5 13 13 C 1.46496 * 120.00028 * 90.00857 * 4 3 2 14 14 C 1.50694 * 109.47823 * 89.32311 * 13 4 3 15 15 C 1.34474 * 126.05373 * 94.71178 * 14 13 4 16 16 O 1.34903 * 107.33325 * 180.26784 * 15 14 13 17 17 C 1.34535 * 107.68264 * 359.97438 * 16 15 14 18 18 C 1.47016 * 125.76510 * 180.02562 * 17 16 15 19 19 C 1.36180 * 125.33233 * 359.97438 * 18 17 16 20 20 C 1.37728 * 114.44293 * 179.97438 * 19 18 17 21 21 C 1.33717 * 115.19391 * 0.02562 * 20 19 18 22 22 S 1.75827 * 109.96143 * 359.76834 * 21 20 19 23 23 N 1.31525 * 108.47486 * 0.02562 * 17 16 15 24 24 H 1.08990 * 109.47453 * 59.99692 * 1 2 3 25 25 H 1.08998 * 109.47382 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46402 * 299.99445 * 1 2 3 27 27 H 1.09005 * 109.46660 * 240.00070 * 2 1 3 28 28 H 1.09000 * 109.47552 * 120.00500 * 2 1 3 29 29 H 1.09000 * 109.46538 * 60.00613 * 3 2 1 30 30 H 1.08994 * 109.47107 * 299.99995 * 3 2 1 31 31 H 0.97005 * 119.99584 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46791 * 329.31801 * 13 4 3 33 33 H 1.09004 * 109.47131 * 209.32405 * 13 4 3 34 34 H 1.07995 * 126.33712 * 0.22787 * 15 14 13 35 35 H 1.07994 * 122.77520 * 359.97438 * 19 18 17 36 36 H 1.07997 * 122.40379 * 179.97438 * 20 19 18 37 37 H 1.07997 * 125.02107 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 5.1332 0.9214 1.2638 7 6 3.6730 2.1113 2.2857 8 7 2.8176 3.0968 2.1145 9 14 4.1908 1.6130 4.0099 10 1 5.3894 2.3925 4.4115 11 1 3.0816 1.8867 4.9585 12 1 4.5132 0.1636 4.0305 13 6 4.2370 1.4426 -1.2696 14 6 4.4737 2.8633 -1.7129 15 6 5.5789 3.5922 -1.4771 16 8 5.3865 4.8056 -2.0343 17 6 4.1679 4.8050 -2.6043 18 6 3.5557 5.9308 -3.3249 19 6 4.1346 7.1474 -3.5226 20 6 3.3592 8.0392 -4.2301 21 6 2.1640 7.5766 -4.6115 22 16 1.9634 5.9152 -4.0721 23 7 3.6166 3.6271 -2.4080 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5138 0.8901 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6768 1.9563 -0.8899 31 1 2.4558 3.5642 2.8837 32 1 3.6529 0.9185 -2.0261 33 1 5.1947 0.9392 -1.1368 34 1 6.4577 3.2668 -0.9403 35 1 5.1200 7.3927 -3.1551 36 1 3.6923 9.0406 -4.4596 37 1 1.4316 8.1391 -5.1714 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122984801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:38 Heat of formation + Delta-G solvation = 54.110890 kcal Electronic energy + Delta-G solvation = -20712.298284 eV Core-core repulsion = 17582.982614 eV Total energy + Delta-G solvation = -3129.315671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.06085 -38.63999 -38.10190 -35.75669 -34.16495 -33.49228 -32.12389 -29.69446 -27.52360 -27.35476 -25.60061 -24.03323 -22.96265 -22.44017 -21.60611 -19.87955 -19.03325 -18.65804 -17.57895 -17.47333 -16.80349 -16.52286 -15.90645 -15.66415 -15.26441 -14.92733 -14.72164 -14.45615 -14.08264 -13.78426 -13.62093 -13.34046 -13.18362 -12.98818 -12.74066 -12.65527 -12.35689 -12.23973 -12.01060 -11.86169 -11.77080 -11.68382 -11.47024 -11.28874 -10.54936 -10.51529 -9.54445 -9.06230 -8.65730 -7.82848 -5.41903 -0.56057 0.33308 0.82226 1.02067 1.44451 1.48127 1.56602 1.62151 1.96158 2.05736 2.51834 3.00068 3.25841 3.77627 4.06166 4.12649 4.18688 4.33848 4.35829 4.49667 4.58330 4.70172 4.70529 4.85008 4.89932 4.94517 5.02784 5.07405 5.12292 5.23318 5.28252 5.35487 5.41414 5.44955 5.55831 5.67797 5.91479 6.43229 6.79696 7.13476 7.82544 8.36947 9.13305 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016965 B = 0.004630 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.045049 B = 6045.844010 C = 6669.882962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.149 3.851 4 N -0.584 5.584 5 C -0.263 4.263 6 H 0.071 0.929 7 C -0.037 4.037 8 N -0.916 5.916 9 Si 0.957 3.043 10 H -0.284 1.284 11 H -0.296 1.296 12 H -0.267 1.267 13 C 0.216 3.784 14 C -0.022 4.022 15 C -0.073 4.073 16 O -0.207 6.207 17 C 0.229 3.771 18 C -0.166 4.166 19 C -0.094 4.094 20 C -0.141 4.141 21 C -0.193 4.193 22 S 0.171 5.829 23 N -0.487 5.487 24 H 0.052 0.948 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.012 0.988 31 H 0.248 0.752 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.238 0.762 35 H 0.153 0.847 36 H 0.183 0.817 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 6.484 -13.083 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.023 3.977 4 N -0.303 5.303 5 C -0.394 4.394 6 H 0.088 0.912 7 C -0.234 4.234 8 N -0.560 5.560 9 Si 0.785 3.215 10 H -0.211 1.211 11 H -0.223 1.223 12 H -0.192 1.192 13 C 0.088 3.912 14 C -0.146 4.146 15 C -0.144 4.144 16 O -0.094 6.094 17 C 0.025 3.975 18 C -0.284 4.284 19 C -0.129 4.129 20 C -0.170 4.170 21 C -0.330 4.330 22 S 0.436 5.564 23 N -0.218 5.218 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.254 0.746 35 H 0.171 0.829 36 H 0.200 0.800 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.547 5.326 -13.314 14.423 hybrid contribution 2.029 1.122 1.756 2.908 sum 0.482 6.447 -11.558 13.244 Atomic orbital electron populations 1.21628 0.95152 1.01716 1.01047 1.21872 0.95750 0.98672 1.00329 1.20887 0.83045 0.94160 0.99635 1.44238 1.01601 1.83840 1.00636 1.19394 1.06333 1.25559 0.88078 0.91167 1.25814 1.00284 0.95111 1.02228 1.70199 1.35122 1.20935 1.29760 0.85458 0.76950 0.78660 0.80446 1.21092 1.22296 1.19191 1.19581 0.97558 0.86118 0.87905 1.23416 0.90311 1.02302 0.98547 1.25285 1.03857 0.81763 1.03461 1.84433 1.33893 1.35303 1.55733 1.22906 0.82214 0.93833 0.98586 1.21658 1.01535 0.94763 1.10465 1.21002 1.02147 0.90641 0.99129 1.20274 0.93757 1.02360 1.00566 1.26508 1.02587 0.97395 1.06500 1.84555 1.11069 1.11767 1.48971 1.70637 1.31263 1.02150 1.17753 0.92860 0.91279 0.94090 0.92923 0.93915 0.91969 0.96926 0.94306 0.92199 0.89839 0.74576 0.82908 0.80019 0.77449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.91 71.98 0.71 -3.99 16 2 C -0.13 -5.21 6.26 30.60 0.19 -5.02 16 3 C 0.15 7.41 5.30 86.38 0.46 7.87 16 4 N -0.58 -29.33 2.44 -706.35 -1.72 -31.05 16 5 C -0.26 -14.05 9.48 84.03 0.80 -13.26 16 6 H 0.07 3.59 7.93 -2.91 -0.02 3.56 16 7 C -0.04 -2.05 4.94 84.86 0.42 -1.63 16 8 N -0.92 -54.74 11.34 21.65 0.25 -54.49 16 9 Si 0.96 44.32 29.61 68.60 2.03 46.35 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 C 0.22 9.28 6.20 85.63 0.53 9.82 16 14 C -0.02 -0.97 6.68 41.33 0.28 -0.69 16 15 C -0.07 -2.91 12.08 66.96 0.81 -2.10 16 16 O -0.21 -8.35 10.79 -10.74 -0.12 -8.46 16 17 C 0.23 9.44 8.09 87.04 0.70 10.14 16 18 C -0.17 -5.52 6.46 24.09 0.16 -5.36 16 19 C -0.09 -2.41 10.15 21.67 0.22 -2.19 16 20 C -0.14 -2.57 10.15 21.12 0.21 -2.36 16 21 C -0.19 -3.44 11.21 66.79 0.75 -2.69 16 22 S 0.17 4.68 23.30 -56.49 -1.32 3.36 16 23 N -0.49 -22.16 11.33 -293.49 -3.33 -25.49 16 24 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.45 8.14 -2.38 -0.02 1.44 16 27 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 3.57 5.33 -2.39 -0.01 3.56 16 30 H 0.01 0.64 8.07 -2.39 -0.02 0.62 16 31 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 32 H 0.06 2.46 8.08 -2.39 -0.02 2.44 16 33 H 0.08 3.19 8.03 -2.39 -0.02 3.17 16 34 H 0.24 7.72 8.06 -2.91 -0.02 7.70 16 35 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 37 H 0.21 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -69.87 335.71 3.10 -66.77 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.07 Total: 14.47 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 6.24 Total: -11.46 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.80 Total: -111.03 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.12 Total: -8.46 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.32 Total: 3.36 kcal Total: -69.87 3.10 -66.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122984801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.882 kcal (2) G-P(sol) polarization free energy of solvation -69.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds