Wall clock time and date at job start Tue Mar 31 2020 06:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47511 * 2 1 4 4 N 1.46500 * 109.47255 * 185.19098 * 3 2 1 5 5 C 1.36933 * 120.00498 * 85.46984 * 4 3 2 6 6 H 1.08007 * 119.99538 * 322.28517 * 5 4 3 7 7 C 1.38813 * 120.00305 * 142.28087 * 5 4 3 8 8 N 1.31622 * 119.99845 * 158.30272 * 7 5 4 9 9 Si 1.86791 * 119.99922 * 338.30207 * 7 5 4 10 10 H 1.48498 * 109.47351 * 95.31963 * 9 7 5 11 11 H 1.48497 * 109.47331 * 215.31838 * 9 7 5 12 12 H 1.48506 * 109.47229 * 335.32030 * 9 7 5 13 13 C 1.46497 * 119.99509 * 265.47061 * 4 3 2 14 14 C 1.50700 * 109.47257 * 90.00218 * 13 4 3 15 15 C 1.40780 * 126.67388 * 94.70986 * 14 13 4 16 16 C 1.37268 * 103.86685 * 179.85883 * 15 14 13 17 17 C 1.47015 * 126.96868 * 180.12928 * 16 15 14 18 18 C 1.36197 * 125.33220 * 180.02562 * 17 16 15 19 19 C 1.37713 * 114.43978 * 179.82857 * 18 17 16 20 20 C 1.33732 * 115.19338 * 0.45753 * 19 18 17 21 21 S 1.75823 * 109.96147 * 359.75243 * 20 19 18 22 22 O 1.34614 * 106.06112 * 0.39565 * 16 15 14 23 23 N 1.20890 * 111.40596 * 359.73064 * 22 16 15 24 24 H 1.08993 * 109.47274 * 184.87029 * 1 2 3 25 25 H 1.09008 * 109.46544 * 304.87574 * 1 2 3 26 26 H 1.09000 * 109.47051 * 64.86636 * 1 2 3 27 27 H 1.09000 * 109.46910 * 239.99804 * 2 1 3 28 28 H 1.09002 * 109.46595 * 120.00380 * 2 1 3 29 29 H 1.08995 * 109.47274 * 65.18662 * 3 2 1 30 30 H 1.09003 * 109.46841 * 305.18700 * 3 2 1 31 31 H 0.96996 * 119.99898 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46839 * 209.99911 * 13 4 3 33 33 H 1.08998 * 109.47375 * 329.99926 * 13 4 3 34 34 H 1.08006 * 128.06810 * 359.96730 * 15 14 13 35 35 H 1.07995 * 122.78186 * 359.97438 * 18 17 16 36 36 H 1.07995 * 122.40582 * 180.18360 * 19 18 17 37 37 H 1.08006 * 125.01723 * 179.76901 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4998 1.4442 -0.1250 5 6 4.0811 1.3871 -1.3635 6 1 3.6435 0.7742 -2.1376 7 6 5.2328 2.1170 -1.6240 8 7 6.0258 1.7641 -2.6135 9 14 5.6570 3.6000 -0.5705 10 1 6.5939 3.1905 0.5063 11 1 6.2975 4.6401 -1.4148 12 1 4.4166 4.1484 0.0347 13 6 4.3375 1.5071 1.0752 14 6 4.6325 0.1096 1.5557 15 6 5.7701 -0.6617 1.2510 16 6 5.5608 -1.8379 1.9271 17 6 6.4491 -3.0089 1.9599 18 6 6.2074 -4.1619 2.6434 19 6 7.1908 -5.1174 2.5147 20 6 8.2304 -4.7650 1.7507 21 16 7.9938 -3.1375 1.1288 22 8 4.3745 -1.7039 2.5491 23 7 3.8812 -0.6223 2.3301 24 1 -0.3633 -1.0239 0.0872 25 1 -0.3633 0.5877 0.8432 26 1 -0.3633 0.4365 -0.9304 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.7547 1.9287 0.9327 30 1 1.6029 1.9824 -0.8399 31 1 6.8307 2.2739 -2.7953 32 1 5.2726 2.0152 0.8393 33 1 3.8125 2.0567 1.8564 34 1 6.6121 -0.3906 0.6313 35 1 5.3172 -4.3152 3.2353 36 1 7.1291 -6.0804 2.9995 37 1 9.0884 -5.3882 1.5459 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123006759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:31 Heat of formation + Delta-G solvation = 115.836108 kcal Electronic energy + Delta-G solvation = -20953.342898 eV Core-core repulsion = 17826.703833 eV Total energy + Delta-G solvation = -3126.639065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.28924 -37.71655 -36.73531 -33.76780 -32.75963 -32.36391 -31.05422 -28.44874 -27.01584 -25.75417 -24.43602 -22.71837 -22.15146 -20.86336 -20.21248 -18.86804 -18.08117 -17.15510 -16.55577 -16.26027 -15.40054 -15.26160 -14.53853 -14.17724 -13.89312 -13.24921 -13.20064 -13.17687 -12.76852 -12.59778 -12.52561 -12.34601 -12.17745 -11.90730 -11.16070 -11.09082 -10.84903 -10.75459 -10.61477 -10.55944 -10.09525 -10.03202 -9.93660 -9.80148 -9.28015 -8.60212 -8.57413 -8.04442 -6.96792 -6.08333 -3.51847 0.47774 1.36833 1.89719 2.03809 2.68689 3.00640 3.21999 3.40455 3.44698 3.56526 4.42613 4.70236 4.79348 4.95097 4.99471 5.25135 5.35197 5.46247 5.59883 5.63528 5.67408 5.71860 5.94024 5.98903 6.06553 6.13948 6.18764 6.25618 6.32598 6.38866 6.44662 6.53493 6.57004 6.63243 6.89769 7.11549 7.94949 8.31675 8.77628 8.87453 9.60636 10.00720 11.06661 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014684 B = 0.005595 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.437314 B = 5002.860963 C = 6185.992314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.147 4.147 3 C 0.151 3.849 4 N -0.592 5.592 5 C -0.269 4.269 6 H 0.080 0.920 7 C 0.040 3.960 8 N -0.893 5.893 9 Si 0.869 3.131 10 H -0.283 1.283 11 H -0.297 1.297 12 H -0.266 1.266 13 C 0.203 3.797 14 C 0.033 3.967 15 C -0.181 4.181 16 C 0.007 3.993 17 C -0.115 4.115 18 C -0.121 4.121 19 C -0.133 4.133 20 C -0.225 4.225 21 S 0.174 5.826 22 O 0.100 5.900 23 N -0.364 5.364 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -10.140 9.961 14.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C 0.026 3.974 4 N -0.313 5.313 5 C -0.398 4.398 6 H 0.097 0.903 7 C -0.161 4.161 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.211 1.211 11 H -0.225 1.225 12 H -0.190 1.190 13 C 0.075 3.925 14 C -0.127 4.127 15 C -0.204 4.204 16 C -0.058 4.058 17 C -0.233 4.233 18 C -0.153 4.153 19 C -0.163 4.163 20 C -0.361 4.361 21 S 0.439 5.561 22 O 0.033 5.967 23 N -0.070 5.070 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.187 0.813 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.869 -8.904 9.464 13.128 hybrid contribution 0.316 -0.278 0.831 0.931 sum 2.184 -9.182 10.295 13.967 Atomic orbital electron populations 1.21697 0.97095 1.00489 1.00966 1.22096 0.94058 1.00432 1.02098 1.20973 0.83448 0.93937 0.99068 1.44135 1.00373 1.85264 1.01562 1.18745 1.09234 1.23311 0.88494 0.90273 1.25445 0.96982 0.97539 0.96127 1.69872 1.12473 1.39096 1.31912 0.87050 0.78437 0.84978 0.79706 1.21133 1.22491 1.19035 1.19841 0.96751 0.86484 0.89410 1.24794 0.90845 1.02020 0.95041 1.22711 1.01999 0.92661 1.03057 1.21219 0.89234 0.94946 1.00443 1.21893 0.99037 0.95675 1.06739 1.20648 1.01281 0.91915 1.01465 1.19961 0.93920 1.00965 1.01428 1.25887 1.04391 1.00093 1.05753 1.84488 1.12664 1.11152 1.47754 1.84892 1.27124 1.29027 1.55662 1.73718 1.20851 0.93041 1.19410 0.93753 0.93406 0.93194 0.92303 0.92237 0.94337 0.92647 0.92552 0.90684 0.92117 0.81316 0.83616 0.83992 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.91 37.16 0.37 -1.87 16 2 C -0.15 -2.83 6.24 -26.73 -0.17 -3.00 16 3 C 0.15 3.11 5.72 -4.04 -0.02 3.09 16 4 N -0.59 -14.06 2.07 -174.62 -0.36 -14.42 16 5 C -0.27 -7.34 9.92 -15.06 -0.15 -7.49 16 6 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 7 C 0.04 1.11 5.31 -17.43 -0.09 1.02 16 8 N -0.89 -26.15 13.97 55.49 0.78 -25.38 16 9 Si 0.87 21.17 25.01 -169.99 -4.25 16.92 16 10 H -0.28 -6.63 6.68 56.52 0.38 -6.26 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 13 C 0.20 4.49 5.12 -5.20 -0.03 4.47 16 14 C 0.03 0.70 6.87 -82.25 -0.57 0.13 16 15 C -0.18 -3.62 10.92 -38.97 -0.43 -4.05 16 16 C 0.01 0.12 7.29 -36.38 -0.27 -0.15 16 17 C -0.11 -1.71 6.45 -36.76 -0.24 -1.94 16 18 C -0.12 -1.50 10.17 -40.51 -0.41 -1.91 16 19 C -0.13 -1.35 10.15 -41.35 -0.42 -1.77 16 20 C -0.22 -2.27 11.21 29.15 0.33 -1.94 16 21 S 0.17 2.24 23.12 -107.50 -2.49 -0.25 16 22 O 0.10 1.85 11.23 15.63 0.18 2.03 16 23 N -0.36 -7.35 10.83 33.52 0.36 -6.99 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.06 1.20 6.87 -51.93 -0.36 0.85 16 29 H 0.04 0.73 7.84 -51.93 -0.41 0.32 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.08 1.74 3.23 -51.93 -0.17 1.58 16 33 H 0.06 1.23 7.86 -51.93 -0.41 0.82 16 34 H 0.17 3.36 8.06 -52.48 -0.42 2.93 16 35 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -29.72 327.45 -7.66 -37.38 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.72 Total: 1.19 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.09 Total: -15.41 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.78 Total: -46.79 kcal Atomic # 8 Polarization: 1.85 SS G_CDS: 0.18 Total: 2.03 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.25 Total: 16.92 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.49 Total: -0.25 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.72 -7.66 -37.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123006759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.215 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds