Wall clock time and date at job start Tue Mar 31 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46761 * 136.85724 * 3 2 1 5 5 C 1.37100 * 120.00496 * 264.22945 * 4 3 2 6 6 H 1.08000 * 120.00410 * 197.72044 * 5 4 3 7 7 C 1.38953 * 119.99451 * 17.73072 * 5 4 3 8 8 N 1.31408 * 120.00398 * 21.39379 * 7 5 4 9 9 Si 1.86804 * 119.99453 * 201.39519 * 7 5 4 10 10 H 1.48502 * 109.47085 * 59.99953 * 9 7 5 11 11 H 1.48496 * 109.46864 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47111 * 299.99460 * 9 7 5 13 13 C 1.34780 * 119.99947 * 84.23312 * 4 3 2 14 14 O 1.21287 * 120.00293 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99816 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47230 * 179.97438 * 15 13 4 17 17 O 1.42901 * 109.47492 * 179.97438 * 16 15 13 18 18 C 1.35944 * 117.00413 * 179.97438 * 17 16 15 19 19 C 1.38706 * 120.02703 * 0.28640 * 18 17 16 20 20 C 1.38157 * 119.96724 * 180.24583 * 19 18 17 21 21 C 1.38454 * 120.02697 * 359.47184 * 20 19 18 22 22 F 1.35108 * 119.96718 * 180.29523 * 21 20 19 23 23 C 1.38449 * 120.06276 * 0.27635 * 21 20 19 24 24 C 1.38155 * 120.03205 * 359.97156 * 23 21 20 25 25 H 1.09001 * 109.47298 * 16.86497 * 3 2 1 26 26 H 1.08995 * 109.47221 * 256.85777 * 3 2 1 27 27 H 0.97002 * 119.99944 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47118 * 59.99840 * 15 13 4 29 29 H 1.08998 * 109.46923 * 300.00105 * 15 13 4 30 30 H 1.09001 * 109.47058 * 59.99978 * 16 15 13 31 31 H 1.08998 * 109.47396 * 299.99991 * 16 15 13 32 32 H 1.08000 * 120.02077 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.98716 * 179.74285 * 20 19 18 34 34 H 1.08007 * 119.98552 * 180.02562 * 23 21 20 35 35 H 1.07993 * 120.01399 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.0087 -0.9445 5 6 3.4369 0.6437 -2.2212 6 1 4.0529 1.2956 -2.8229 7 6 2.9900 -0.5649 -2.7411 8 7 1.9370 -1.1546 -2.2213 9 14 3.8863 -1.3515 -4.1790 10 1 5.2944 -1.6249 -3.7948 11 1 3.2164 -2.6260 -4.5423 12 1 3.8607 -0.4291 -5.3425 13 6 3.2092 2.2950 -0.5583 14 8 3.6135 3.1295 -1.3401 15 6 2.8348 2.6961 0.8452 16 6 3.0557 4.1997 1.0221 17 8 2.7001 4.5802 2.3528 18 6 2.8392 5.8930 2.6774 19 6 3.3025 6.7964 1.7323 20 6 3.4482 8.1293 2.0650 21 6 3.1215 8.5654 3.3378 22 9 3.2588 9.8703 3.6601 23 6 2.6540 7.6657 4.2805 24 6 2.5122 6.3313 3.9521 25 1 2.9718 -0.9826 -0.2981 26 1 2.9712 0.2345 1.0007 27 1 1.6252 -1.9985 -2.5840 28 1 3.4559 2.1518 1.5566 29 1 1.7858 2.4593 1.0232 30 1 2.4349 4.7443 0.3107 31 1 4.1048 4.4362 0.8443 32 1 3.5527 6.4574 0.7379 33 1 3.8128 8.8323 1.3307 34 1 2.3991 8.0073 5.2730 35 1 2.1471 5.6298 4.6875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126597473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:44 Heat of formation + Delta-G solvation = -55.445279 kcal Electronic energy + Delta-G solvation = -21932.136068 eV Core-core repulsion = 18231.856509 eV Total energy + Delta-G solvation = -3700.279559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.92974 -40.17998 -38.97889 -37.28593 -35.89950 -34.45179 -32.23800 -31.61605 -31.14344 -29.15347 -27.53679 -25.62140 -23.97632 -22.81654 -21.85380 -19.22659 -18.42396 -18.00619 -17.50156 -16.66956 -16.59309 -16.19218 -16.00389 -15.58311 -14.90686 -14.60367 -14.41937 -14.08885 -14.05558 -13.75673 -13.17488 -13.07700 -12.79629 -12.70871 -12.60816 -12.09056 -11.79012 -11.58301 -11.52999 -11.35462 -11.18360 -10.83655 -10.67477 -10.54569 -10.49171 -10.35888 -9.35320 -9.34834 -8.78277 -8.19330 -8.15552 -6.59814 -4.09846 1.00263 1.09055 3.01159 3.06532 3.17413 3.20940 3.43879 3.45880 3.70830 3.90939 4.05809 4.17789 4.54295 4.62067 4.74472 4.82146 4.97570 5.05392 5.11481 5.19490 5.21311 5.40352 5.49547 5.66732 5.74530 5.92304 5.96936 5.99442 6.02125 6.10065 6.15988 6.42449 6.58030 7.32718 7.38330 7.77016 8.16399 8.66894 8.88147 9.08115 9.59330 10.46075 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.003015 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.684461 B = 9285.585674 C = 9965.536870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.244 3.756 3 C 0.219 3.781 4 N -0.437 5.437 5 C -0.318 4.318 6 H 0.110 0.890 7 C 0.034 3.966 8 N -0.875 5.875 9 Si 0.929 3.071 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.457 3.543 14 O -0.577 6.577 15 C -0.135 4.135 16 C 0.078 3.922 17 O -0.314 6.314 18 C 0.132 3.868 19 C -0.180 4.180 20 C -0.111 4.111 21 C 0.049 3.951 22 F -0.145 7.145 23 C -0.115 4.115 24 C -0.129 4.129 25 H 0.129 0.871 26 H 0.086 0.914 27 H 0.275 0.725 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.252 9.327 11.547 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.074 4.074 3 C 0.092 3.908 4 N -0.157 5.157 5 C -0.445 4.445 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.513 5.513 9 Si 0.755 3.245 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.246 3.754 14 O -0.460 6.460 15 C -0.176 4.176 16 C 0.003 3.997 17 O -0.228 6.228 18 C 0.086 3.914 19 C -0.199 4.199 20 C -0.130 4.130 21 C 0.030 3.970 22 F -0.124 7.124 23 C -0.134 4.134 24 C -0.147 4.147 25 H 0.146 0.854 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.611 9.419 11.215 14.877 hybrid contribution 0.685 -0.331 -0.975 1.236 sum 3.295 9.088 10.241 14.083 Atomic orbital electron populations 1.80910 1.13576 1.09416 1.11052 1.29268 0.95340 0.92107 0.90718 1.18779 0.81677 0.97419 0.92941 1.43595 1.56082 1.04452 1.11545 1.19693 1.30328 1.04216 0.90215 0.87272 1.25302 0.94889 0.97662 0.99188 1.69852 1.19669 1.18652 1.43121 0.85939 0.79479 0.78281 0.80765 1.19609 1.20960 1.19751 1.19731 0.84467 0.82616 0.88607 1.90556 1.50765 1.49395 1.55313 1.21472 1.04018 0.94557 0.97509 1.22543 1.01238 0.95807 0.80139 1.86023 1.81777 1.21608 1.33383 1.19053 0.95107 0.83607 0.93674 1.21314 1.04771 0.93040 1.00799 1.20961 1.00422 0.96368 0.95213 1.17571 1.06132 0.78505 0.94787 1.91476 1.94132 1.33522 1.93263 1.20912 1.00487 0.92360 0.99605 1.20293 1.04164 0.95291 0.94982 0.85361 0.89577 0.91414 0.88757 0.89169 0.91038 0.90843 0.83839 0.84531 0.84275 0.84142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.84 18.54 42.15 0.78 -10.06 16 2 C 0.24 5.17 12.95 -20.76 -0.27 4.90 16 3 C 0.22 4.09 4.91 -6.83 -0.03 4.05 16 4 N -0.44 -9.64 2.60 -117.94 -0.31 -9.95 16 5 C -0.32 -7.83 9.32 -14.93 -0.14 -7.97 16 6 H 0.11 2.84 7.39 -52.49 -0.39 2.45 16 7 C 0.03 0.80 4.87 -17.47 -0.09 0.72 16 8 N -0.87 -21.31 9.48 55.50 0.53 -20.78 16 9 Si 0.93 18.94 29.60 -169.99 -5.03 13.91 16 10 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 C 0.46 9.63 7.57 -10.98 -0.08 9.55 16 14 O -0.58 -13.99 15.63 5.55 0.09 -13.90 16 15 C -0.14 -2.16 4.67 -27.88 -0.13 -2.29 16 16 C 0.08 1.15 4.03 37.15 0.15 1.30 16 17 O -0.31 -4.40 10.14 -19.56 -0.20 -4.59 16 18 C 0.13 1.67 6.69 -39.24 -0.26 1.41 16 19 C -0.18 -2.17 9.04 -39.44 -0.36 -2.52 16 20 C -0.11 -1.22 10.02 -39.53 -0.40 -1.62 16 21 C 0.05 0.55 7.30 -39.42 -0.29 0.27 16 22 F -0.15 -1.69 17.27 2.25 0.04 -1.65 16 23 C -0.11 -1.15 10.02 -39.53 -0.40 -1.55 16 24 C -0.13 -1.39 9.99 -39.44 -0.39 -1.78 16 25 H 0.13 2.45 6.46 -51.93 -0.34 2.12 16 26 H 0.09 1.19 6.68 -51.93 -0.35 0.84 16 27 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.09 1.24 7.42 -51.93 -0.39 0.86 16 29 H 0.09 1.45 7.51 -51.93 -0.39 1.06 16 30 H 0.07 1.11 7.61 -51.93 -0.40 0.72 16 31 H 0.07 1.06 7.63 -51.93 -0.40 0.67 16 32 H 0.14 1.68 6.30 -52.49 -0.33 1.35 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -29.50 315.41 -5.40 -34.91 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.37 Total: 2.89 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.68 Total: 4.47 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 1.00 Total: -40.79 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.11 Total: -18.49 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.50 -5.40 -34.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126597473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.539 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds