Wall clock time and date at job start Tue Mar 31 2020 06:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46761 * 136.85724 * 3 2 1 5 5 C 1.37100 * 120.00496 * 264.22945 * 4 3 2 6 6 H 1.08000 * 120.00410 * 197.72044 * 5 4 3 7 7 C 1.38953 * 119.99451 * 17.73072 * 5 4 3 8 8 N 1.31408 * 120.00398 * 21.39379 * 7 5 4 9 9 Si 1.86804 * 119.99453 * 201.39519 * 7 5 4 10 10 H 1.48502 * 109.47085 * 59.99953 * 9 7 5 11 11 H 1.48496 * 109.46864 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47111 * 299.99460 * 9 7 5 13 13 C 1.34780 * 119.99947 * 84.23312 * 4 3 2 14 14 O 1.21287 * 120.00293 * 179.97438 * 13 4 3 15 15 C 1.50704 * 119.99816 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47230 * 179.97438 * 15 13 4 17 17 O 1.42901 * 109.47492 * 179.97438 * 16 15 13 18 18 C 1.35944 * 117.00413 * 179.97438 * 17 16 15 19 19 C 1.38706 * 120.02703 * 0.28640 * 18 17 16 20 20 C 1.38157 * 119.96724 * 180.24583 * 19 18 17 21 21 C 1.38454 * 120.02697 * 359.47184 * 20 19 18 22 22 F 1.35108 * 119.96718 * 180.29523 * 21 20 19 23 23 C 1.38449 * 120.06276 * 0.27635 * 21 20 19 24 24 C 1.38155 * 120.03205 * 359.97156 * 23 21 20 25 25 H 1.09001 * 109.47298 * 16.86497 * 3 2 1 26 26 H 1.08995 * 109.47221 * 256.85777 * 3 2 1 27 27 H 0.97002 * 119.99944 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47118 * 59.99840 * 15 13 4 29 29 H 1.08998 * 109.46923 * 300.00105 * 15 13 4 30 30 H 1.09001 * 109.47058 * 59.99978 * 16 15 13 31 31 H 1.08998 * 109.47396 * 299.99991 * 16 15 13 32 32 H 1.08000 * 120.02077 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.98716 * 179.74285 * 20 19 18 34 34 H 1.08007 * 119.98552 * 180.02562 * 23 21 20 35 35 H 1.07993 * 120.01399 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.0087 -0.9445 5 6 3.4369 0.6437 -2.2212 6 1 4.0529 1.2956 -2.8229 7 6 2.9900 -0.5649 -2.7411 8 7 1.9370 -1.1546 -2.2213 9 14 3.8863 -1.3515 -4.1790 10 1 5.2944 -1.6249 -3.7948 11 1 3.2164 -2.6260 -4.5423 12 1 3.8607 -0.4291 -5.3425 13 6 3.2092 2.2950 -0.5583 14 8 3.6135 3.1295 -1.3401 15 6 2.8348 2.6961 0.8452 16 6 3.0557 4.1997 1.0221 17 8 2.7001 4.5802 2.3528 18 6 2.8392 5.8930 2.6774 19 6 3.3025 6.7964 1.7323 20 6 3.4482 8.1293 2.0650 21 6 3.1215 8.5654 3.3378 22 9 3.2588 9.8703 3.6601 23 6 2.6540 7.6657 4.2805 24 6 2.5122 6.3313 3.9521 25 1 2.9718 -0.9826 -0.2981 26 1 2.9712 0.2345 1.0007 27 1 1.6252 -1.9985 -2.5840 28 1 3.4559 2.1518 1.5566 29 1 1.7858 2.4593 1.0232 30 1 2.4349 4.7443 0.3107 31 1 4.1048 4.4362 0.8443 32 1 3.5527 6.4574 0.7379 33 1 3.8128 8.8323 1.3307 34 1 2.3991 8.0073 5.2730 35 1 2.1471 5.6298 4.6875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126597473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:43 Heat of formation + Delta-G solvation = -71.846743 kcal Electronic energy + Delta-G solvation = -21932.847289 eV Core-core repulsion = 18231.856509 eV Total energy + Delta-G solvation = -3700.990780 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.81599 -41.22023 -40.53832 -38.28344 -37.59523 -36.19633 -33.91205 -32.88886 -32.11961 -30.12701 -29.15171 -27.16934 -25.27087 -23.77706 -22.86886 -20.76937 -19.76671 -19.44190 -18.47726 -18.14011 -17.81529 -17.46202 -17.23318 -16.51504 -16.43433 -15.97889 -15.65439 -15.49482 -15.18422 -14.73142 -14.58071 -14.48475 -14.08236 -13.90738 -13.74021 -13.61225 -13.37310 -13.13674 -12.91268 -12.73035 -12.62626 -12.32978 -12.13462 -12.08892 -11.75712 -11.64636 -11.11633 -10.50970 -10.18406 -9.94505 -9.12222 -8.41442 -5.97406 0.16373 0.19572 1.40613 1.49609 1.57802 1.76286 1.94784 2.11632 2.26134 2.38093 2.56806 2.99871 3.21708 3.32211 3.60025 3.66328 3.81624 3.84824 3.97810 4.08831 4.12894 4.31763 4.40776 4.53970 4.67166 4.80484 4.83729 4.92313 4.92830 5.13035 5.14243 5.25953 5.48657 5.70996 6.00837 6.31452 6.37461 7.01204 7.09803 7.32983 7.87377 8.61982 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.031323 B = 0.003015 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.684461 B = 9285.585674 C = 9965.536870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.257 3.743 3 C 0.219 3.781 4 N -0.451 5.451 5 C -0.343 4.343 6 H 0.085 0.915 7 C 0.008 3.992 8 N -0.891 5.891 9 Si 0.986 3.014 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.453 3.547 14 O -0.616 6.616 15 C -0.124 4.124 16 C 0.086 3.914 17 O -0.317 6.317 18 C 0.109 3.891 19 C -0.190 4.190 20 C -0.115 4.115 21 C 0.040 3.960 22 F -0.148 7.148 23 C -0.108 4.108 24 C -0.126 4.126 25 H 0.125 0.875 26 H 0.143 0.857 27 H 0.275 0.725 28 H 0.132 0.868 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.168 0.832 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 9.271 13.295 16.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.061 4.061 3 C 0.093 3.907 4 N -0.170 5.170 5 C -0.471 4.471 6 H 0.103 0.897 7 C -0.195 4.195 8 N -0.529 5.529 9 Si 0.810 3.190 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.244 3.756 14 O -0.502 6.502 15 C -0.164 4.164 16 C 0.011 3.989 17 O -0.231 6.231 18 C 0.063 3.937 19 C -0.209 4.209 20 C -0.134 4.134 21 C 0.021 3.979 22 F -0.127 7.127 23 C -0.126 4.126 24 C -0.144 4.144 25 H 0.143 0.857 26 H 0.161 0.839 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.168 0.832 34 H 0.185 0.815 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.098 9.360 12.990 16.308 hybrid contribution 0.530 -0.202 -1.491 1.596 sum 3.628 9.157 11.499 15.141 Atomic orbital electron populations 1.80913 1.14842 1.10713 1.12419 1.29781 0.95847 0.90921 0.89512 1.19139 0.80026 0.96616 0.94927 1.43760 1.56278 1.05586 1.11382 1.19610 1.31094 1.04655 0.91709 0.89704 1.25879 0.95079 0.97473 1.01073 1.69933 1.20191 1.18706 1.44085 0.85094 0.79047 0.77069 0.77752 1.18390 1.20613 1.20904 1.20578 0.82840 0.81934 0.90295 1.90530 1.52142 1.50463 1.57061 1.21366 1.04692 0.95686 0.94640 1.22310 1.01000 0.94991 0.80638 1.85977 1.82213 1.22531 1.32342 1.19345 0.96440 0.83140 0.94734 1.21344 1.05317 0.93528 1.00724 1.21125 1.00231 0.96256 0.95778 1.17782 1.06361 0.78609 0.95162 1.91471 1.94183 1.33777 1.93272 1.21213 0.99117 0.91738 1.00533 1.20552 1.03381 0.95952 0.94518 0.85690 0.83943 0.91492 0.85028 0.88857 0.92544 0.90774 0.84297 0.83177 0.81497 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.15 18.54 20.00 0.37 -22.78 16 2 C 0.26 10.59 12.95 89.44 1.16 11.74 16 3 C 0.22 7.76 4.91 84.57 0.42 8.18 16 4 N -0.45 -19.60 2.60 -645.42 -1.68 -21.28 16 5 C -0.34 -17.07 9.32 84.04 0.78 -16.29 16 6 H 0.09 4.55 7.39 -2.91 -0.02 4.53 16 7 C 0.01 0.36 4.87 84.93 0.41 0.77 16 8 N -0.89 -43.01 9.48 21.66 0.21 -42.80 16 9 Si 0.99 38.69 29.60 68.60 2.03 40.72 16 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 11 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 12 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 13 C 0.45 18.87 7.57 87.66 0.66 19.53 16 14 O -0.62 -30.38 15.63 -3.05 -0.05 -30.42 16 15 C -0.12 -3.72 4.67 29.85 0.14 -3.58 16 16 C 0.09 2.48 4.03 71.98 0.29 2.77 16 17 O -0.32 -8.35 10.14 -92.92 -0.94 -9.29 16 18 C 0.11 2.62 6.69 22.49 0.15 2.77 16 19 C -0.19 -4.47 9.04 22.36 0.20 -4.27 16 20 C -0.12 -2.43 10.02 22.30 0.22 -2.20 16 21 C 0.04 0.83 7.30 22.37 0.16 0.99 16 22 F -0.15 -3.20 17.27 44.97 0.78 -2.43 16 23 C -0.11 -1.88 10.02 22.30 0.22 -1.66 16 24 C -0.13 -2.41 9.99 22.36 0.22 -2.19 16 25 H 0.13 4.58 6.46 -2.39 -0.02 4.56 16 26 H 0.14 3.38 6.68 -2.39 -0.02 3.37 16 27 H 0.28 12.90 8.31 -92.71 -0.77 12.13 16 28 H 0.13 2.97 7.42 -2.39 -0.02 2.95 16 29 H 0.09 2.81 7.51 -2.39 -0.02 2.79 16 30 H 0.06 1.78 7.61 -2.39 -0.02 1.76 16 31 H 0.07 2.11 7.63 -2.39 -0.02 2.09 16 32 H 0.14 3.31 6.30 -2.91 -0.02 3.29 16 33 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -64.14 315.41 6.90 -57.24 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: 1.14 Total: 14.48 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 5.05 Total: 16.58 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -1.10 Total: -86.86 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.99 Total: -39.72 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -64.14 6.90 -57.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126597473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.611 kcal (2) G-P(sol) polarization free energy of solvation -64.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds