Wall clock time and date at job start Tue Mar 31 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46718 * 2 1 4 4 O 1.42900 * 109.47504 * 239.99877 * 2 1 3 5 5 C 1.35891 * 116.99826 * 87.57797 * 4 2 1 6 6 C 1.38773 * 120.04008 * 174.40457 * 5 4 2 7 7 C 1.38131 * 119.99756 * 180.02562 * 6 5 4 8 8 C 1.38258 * 120.07478 * 0.27849 * 7 6 5 9 9 C 1.38473 * 120.08824 * 359.44559 * 8 7 6 10 10 F 1.35101 * 120.00108 * 180.27866 * 9 8 7 11 11 C 1.38385 * 120.00056 * 0.55272 * 9 8 7 12 12 C 1.50702 * 109.47225 * 119.99249 * 2 1 3 13 13 O 1.21296 * 119.99466 * 108.14668 * 12 2 1 14 14 N 1.34775 * 120.00602 * 288.14749 * 12 2 1 15 15 C 1.37088 * 120.00379 * 185.37564 * 14 12 2 16 16 H 1.08001 * 120.00028 * 11.61810 * 15 14 12 17 17 C 1.38953 * 120.00355 * 191.61532 * 15 14 12 18 18 N 1.31414 * 119.99726 * 12.09969 * 17 15 14 19 19 Si 1.86791 * 120.00107 * 192.09717 * 17 15 14 20 20 H 1.48500 * 109.47415 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47388 * 120.00049 * 19 17 15 22 22 H 1.48504 * 109.47233 * 239.99815 * 19 17 15 23 23 C 1.46498 * 119.99472 * 5.37900 * 14 12 2 24 24 C 1.47201 * 109.47437 * 93.29124 * 23 14 12 25 25 N 4.30855 * 48.97848 * 78.21596 * 2 1 3 26 26 H 1.09003 * 109.47188 * 299.53623 * 1 2 3 27 27 H 1.08999 * 109.47120 * 59.54303 * 1 2 3 28 28 H 1.08997 * 109.46714 * 179.54521 * 1 2 3 29 29 H 1.08002 * 120.00188 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.96464 * 180.02562 * 7 6 5 31 31 H 1.08003 * 119.95469 * 179.70307 * 8 7 6 32 32 H 1.08000 * 120.04051 * 179.75108 * 11 9 8 33 33 H 0.96999 * 119.99912 * 179.97438 * 18 17 15 34 34 H 1.09006 * 109.47341 * 213.28976 * 23 14 12 35 35 H 1.08997 * 109.47624 * 333.29042 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.1639 0.0747 -2.2901 6 6 2.7315 -0.4870 -3.4250 7 6 2.8916 0.2746 -4.5663 8 6 2.4922 1.5982 -4.5776 9 6 1.9202 2.1604 -3.4488 10 9 1.5253 3.4524 -3.4637 11 6 1.7581 1.4006 -2.3036 12 6 2.0324 -0.7103 1.2306 13 8 2.5430 -1.8061 1.1322 14 7 1.9144 -0.1279 2.4403 15 6 2.4687 -0.7223 3.5442 16 1 3.1540 -1.5486 3.4258 17 6 2.1490 -0.2617 4.8156 18 7 1.1476 0.5733 4.9793 19 14 3.1427 -0.8294 6.2919 20 1 4.2084 -1.7609 5.8428 21 1 3.7612 0.3470 6.9544 22 1 2.2489 -1.5250 7.2524 23 6 1.1935 1.1402 2.5754 24 6 -0.2127 0.8714 2.9178 25 7 -1.2979 0.6639 3.1821 26 1 -0.3634 0.5066 0.8941 27 1 -0.3633 0.5209 -0.8858 28 1 -0.3633 -1.0276 -0.0082 29 1 3.0481 -1.5195 -3.4161 30 1 3.3330 -0.1631 -5.4494 31 1 2.6226 2.1932 -5.4694 32 1 1.3158 1.8396 -1.4216 33 1 0.9242 0.8946 5.8669 34 1 1.6519 1.7365 3.3644 35 1 1.2399 1.6868 1.6335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126600212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:39 Heat of formation + Delta-G solvation = -36.879310 kcal Electronic energy + Delta-G solvation = -23038.383718 eV Core-core repulsion = 19338.909240 eV Total energy + Delta-G solvation = -3699.474478 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.98661 -40.43262 -38.93111 -37.15245 -35.88694 -34.39033 -32.52242 -31.26586 -30.69347 -29.56761 -27.57077 -25.54672 -24.03182 -22.77986 -22.23966 -19.63791 -18.67390 -18.08466 -16.85104 -16.56104 -16.30025 -16.18523 -15.79190 -15.57339 -15.13336 -15.01356 -14.33683 -14.07627 -13.81070 -13.55023 -13.46197 -13.16558 -12.72441 -12.27003 -12.07966 -11.89150 -11.79071 -11.63178 -11.55238 -11.31453 -11.25233 -11.03622 -10.85871 -10.58226 -10.43998 -10.37946 -9.42225 -9.03572 -8.71965 -8.26785 -8.25001 -6.58936 -4.14027 1.05032 1.21319 2.96241 3.00106 3.17185 3.24473 3.38208 3.52899 3.72076 3.92603 4.06394 4.13422 4.56090 4.68820 4.76932 4.83687 4.90853 5.02946 5.08094 5.18888 5.22656 5.38109 5.41623 5.77338 5.78637 5.93139 5.95004 5.97192 6.16577 6.22072 6.32389 6.54819 6.62660 7.33206 7.36096 7.71352 8.14172 8.71598 8.84794 9.02785 9.52663 10.43200 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.004284 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.091592 B = 6534.867231 C = 7041.876324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.070 3.930 3 H 0.090 0.910 4 O -0.274 6.274 5 C 0.170 3.830 6 C -0.164 4.164 7 C -0.052 4.052 8 C -0.202 4.202 9 C 0.139 3.861 10 F -0.139 7.139 11 C -0.253 4.253 12 C 0.457 3.543 13 O -0.551 6.551 14 N -0.439 5.439 15 C -0.303 4.303 16 H 0.113 0.887 17 C 0.029 3.971 18 N -0.889 5.889 19 Si 0.939 3.061 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.281 1.281 23 C 0.217 3.783 24 C 0.256 3.744 25 N -0.476 5.476 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.276 0.724 34 H 0.139 0.861 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.965 5.580 -14.000 15.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.010 3.990 3 H 0.108 0.892 4 O -0.185 6.185 5 C 0.123 3.877 6 C -0.183 4.183 7 C -0.070 4.070 8 C -0.221 4.221 9 C 0.119 3.881 10 F -0.117 7.117 11 C -0.273 4.273 12 C 0.244 3.756 13 O -0.431 6.431 14 N -0.161 5.161 15 C -0.429 4.429 16 H 0.131 0.869 17 C -0.173 4.173 18 N -0.530 5.530 19 Si 0.765 3.235 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.207 1.207 23 C 0.090 3.910 24 C -0.061 4.061 25 N -0.157 5.157 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.157 0.843 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.587 4.631 -13.423 14.288 hybrid contribution 0.476 0.431 0.946 1.144 sum 2.063 5.062 -12.476 13.622 Atomic orbital electron populations 1.22484 0.93227 1.04553 1.03566 1.22370 0.95385 0.96755 0.84512 0.89216 1.86286 1.79902 1.35748 1.16547 1.18912 0.92234 0.88990 0.87594 1.20564 1.04432 1.01939 0.91343 1.20778 0.96368 0.92513 0.97360 1.20991 1.05876 0.96956 0.98247 1.17381 0.97540 0.78520 0.94613 1.91502 1.88545 1.34620 1.97050 1.21287 1.10980 0.95068 0.99958 1.19471 0.85605 0.86945 0.83620 1.90592 1.47318 1.19847 1.85372 1.43580 1.47237 1.18999 1.06271 1.19909 1.23329 1.17138 0.82551 0.86944 1.25316 0.96062 0.96719 0.99183 1.69643 1.25755 1.33247 1.24357 0.85646 0.79308 0.78614 0.79947 1.19039 1.20332 1.20710 1.19012 0.82176 0.88249 1.01599 1.28896 0.93969 0.93059 0.90201 1.80927 1.14817 1.07803 1.12189 0.89870 0.91371 0.90689 0.84330 0.84436 0.84881 0.83852 0.91320 0.84323 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 8.96 37.16 0.33 -2.57 16 2 C 0.07 1.21 1.79 -27.88 -0.05 1.16 16 3 H 0.09 1.31 4.97 -51.93 -0.26 1.05 16 4 O -0.27 -4.84 9.35 -39.02 -0.36 -5.21 16 5 C 0.17 2.46 6.62 -39.23 -0.26 2.20 16 6 C -0.16 -2.00 9.99 -39.42 -0.39 -2.39 16 7 C -0.05 -0.51 10.04 -39.61 -0.40 -0.90 16 8 C -0.20 -2.07 10.02 -39.49 -0.40 -2.47 16 9 C 0.14 1.69 7.30 -39.44 -0.29 1.41 16 10 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 11 C -0.25 -3.33 8.35 -39.37 -0.33 -3.66 16 12 C 0.46 10.25 6.98 -10.99 -0.08 10.17 16 13 O -0.55 -14.55 16.18 -14.08 -0.23 -14.77 16 14 N -0.44 -9.94 2.59 -117.93 -0.31 -10.25 16 15 C -0.30 -7.57 9.45 -14.94 -0.14 -7.71 16 16 H 0.11 2.98 7.29 -52.49 -0.38 2.59 16 17 C 0.03 0.69 5.19 -17.47 -0.09 0.60 16 18 N -0.89 -21.35 8.40 55.50 0.47 -20.89 16 19 Si 0.94 19.32 29.57 -169.99 -5.03 14.29 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.22 4.16 4.75 -6.83 -0.03 4.13 16 24 C 0.26 5.48 10.45 -20.76 -0.22 5.27 16 25 N -0.48 -11.01 18.53 42.15 0.78 -10.23 16 26 H 0.08 1.40 3.81 -51.93 -0.20 1.20 16 27 H 0.07 0.91 7.20 -51.93 -0.37 0.54 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 32 H 0.14 1.75 5.52 -52.49 -0.29 1.46 16 33 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 34 H 0.14 2.73 6.34 -51.93 -0.33 2.40 16 35 H 0.08 1.09 5.67 -51.93 -0.29 0.80 16 LS Contribution 304.53 15.07 4.59 4.59 Total: -1.00 -30.10 304.53 -5.34 -35.44 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.95 Total: 3.48 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.34 Total: 5.24 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 0.94 Total: -41.37 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.59 Total: -19.98 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.10 -5.34 -35.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126600212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.436 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds