Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46718 * 2 1 4 4 O 1.42900 * 109.47504 * 239.99877 * 2 1 3 5 5 C 1.35891 * 116.99826 * 87.57797 * 4 2 1 6 6 C 1.38773 * 120.04008 * 174.40457 * 5 4 2 7 7 C 1.38131 * 119.99756 * 180.02562 * 6 5 4 8 8 C 1.38258 * 120.07478 * 0.27849 * 7 6 5 9 9 C 1.38473 * 120.08824 * 359.44559 * 8 7 6 10 10 F 1.35101 * 120.00108 * 180.27866 * 9 8 7 11 11 C 1.38385 * 120.00056 * 0.55272 * 9 8 7 12 12 C 1.50702 * 109.47225 * 119.99249 * 2 1 3 13 13 O 1.21296 * 119.99466 * 108.14668 * 12 2 1 14 14 N 1.34775 * 120.00602 * 288.14749 * 12 2 1 15 15 C 1.37088 * 120.00379 * 185.37564 * 14 12 2 16 16 H 1.08001 * 120.00028 * 11.61810 * 15 14 12 17 17 C 1.38953 * 120.00355 * 191.61532 * 15 14 12 18 18 N 1.31414 * 119.99726 * 12.09969 * 17 15 14 19 19 Si 1.86791 * 120.00107 * 192.09717 * 17 15 14 20 20 H 1.48500 * 109.47415 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47388 * 120.00049 * 19 17 15 22 22 H 1.48504 * 109.47233 * 239.99815 * 19 17 15 23 23 C 1.46498 * 119.99472 * 5.37900 * 14 12 2 24 24 C 1.47201 * 109.47437 * 93.29124 * 23 14 12 25 25 N 4.30855 * 48.97848 * 78.21596 * 2 1 3 26 26 H 1.09003 * 109.47188 * 299.53623 * 1 2 3 27 27 H 1.08999 * 109.47120 * 59.54303 * 1 2 3 28 28 H 1.08997 * 109.46714 * 179.54521 * 1 2 3 29 29 H 1.08002 * 120.00188 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.96464 * 180.02562 * 7 6 5 31 31 H 1.08003 * 119.95469 * 179.70307 * 8 7 6 32 32 H 1.08000 * 120.04051 * 179.75108 * 11 9 8 33 33 H 0.96999 * 119.99912 * 179.97438 * 18 17 15 34 34 H 1.09006 * 109.47341 * 213.28976 * 23 14 12 35 35 H 1.08997 * 109.47624 * 333.29042 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1667 5 6 2.1639 0.0747 -2.2901 6 6 2.7315 -0.4870 -3.4250 7 6 2.8916 0.2746 -4.5663 8 6 2.4922 1.5982 -4.5776 9 6 1.9202 2.1604 -3.4488 10 9 1.5253 3.4524 -3.4637 11 6 1.7581 1.4006 -2.3036 12 6 2.0324 -0.7103 1.2306 13 8 2.5430 -1.8061 1.1322 14 7 1.9144 -0.1279 2.4403 15 6 2.4687 -0.7223 3.5442 16 1 3.1540 -1.5486 3.4258 17 6 2.1490 -0.2617 4.8156 18 7 1.1476 0.5733 4.9793 19 14 3.1427 -0.8294 6.2919 20 1 4.2084 -1.7609 5.8428 21 1 3.7612 0.3470 6.9544 22 1 2.2489 -1.5250 7.2524 23 6 1.1935 1.1402 2.5754 24 6 -0.2127 0.8714 2.9178 25 7 -1.2979 0.6639 3.1821 26 1 -0.3634 0.5066 0.8941 27 1 -0.3633 0.5209 -0.8858 28 1 -0.3633 -1.0276 -0.0082 29 1 3.0481 -1.5195 -3.4161 30 1 3.3330 -0.1631 -5.4494 31 1 2.6226 2.1932 -5.4694 32 1 1.3158 1.8396 -1.4216 33 1 0.9242 0.8946 5.8669 34 1 1.6519 1.7365 3.3644 35 1 1.2399 1.6868 1.6335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126600212.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = -53.792524 kcal Electronic energy + Delta-G solvation = -23039.117130 eV Core-core repulsion = 19338.909240 eV Total energy + Delta-G solvation = -3700.207890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.90439 -41.71567 -40.38621 -38.30319 -37.64334 -36.18825 -34.18883 -32.73149 -31.62078 -30.57423 -29.24423 -27.25264 -25.36164 -23.79076 -23.33715 -21.16049 -20.01649 -19.64502 -18.27305 -18.04027 -17.64637 -17.17556 -16.86382 -16.69335 -16.54847 -16.34655 -15.91706 -15.27735 -15.23511 -15.05539 -14.95553 -14.33668 -13.97349 -13.75471 -13.58731 -13.35258 -13.15702 -13.08303 -12.92561 -12.84930 -12.50027 -12.35926 -12.29099 -12.12508 -12.09531 -11.90618 -11.22697 -10.49686 -10.10152 -9.90571 -9.26453 -8.43179 -6.05247 0.15801 0.29880 1.32199 1.44119 1.54913 1.67187 1.75020 2.10393 2.24718 2.37995 2.62829 2.95149 3.03097 3.20858 3.51545 3.60581 3.69837 3.85217 3.88173 4.01620 4.09132 4.31513 4.42865 4.46895 4.53936 4.66564 4.94216 5.00877 5.04049 5.10923 5.26313 5.37681 5.40908 5.71845 5.87718 6.24554 6.38337 6.99179 7.03178 7.21547 7.74444 8.55719 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023384 B = 0.004284 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.091592 B = 6534.867231 C = 7041.876324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.082 3.918 3 H 0.121 0.879 4 O -0.302 6.302 5 C 0.139 3.861 6 C -0.172 4.172 7 C -0.039 4.039 8 C -0.190 4.190 9 C 0.125 3.875 10 F -0.142 7.142 11 C -0.258 4.258 12 C 0.447 3.553 13 O -0.603 6.603 14 N -0.447 5.447 15 C -0.333 4.333 16 H 0.086 0.914 17 C 0.005 3.995 18 N -0.897 5.897 19 Si 0.994 3.006 20 H -0.272 1.272 21 H -0.261 1.261 22 H -0.287 1.287 23 C 0.216 3.784 24 C 0.268 3.732 25 N -0.509 5.509 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.141 0.859 30 H 0.176 0.824 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.278 0.722 34 H 0.138 0.862 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.391 7.236 -15.730 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.022 3.978 3 H 0.138 0.862 4 O -0.214 6.214 5 C 0.093 3.907 6 C -0.191 4.191 7 C -0.057 4.057 8 C -0.209 4.209 9 C 0.106 3.894 10 F -0.120 7.120 11 C -0.278 4.278 12 C 0.236 3.764 13 O -0.487 6.487 14 N -0.168 5.168 15 C -0.460 4.460 16 H 0.104 0.896 17 C -0.196 4.196 18 N -0.537 5.537 19 Si 0.819 3.181 20 H -0.197 1.197 21 H -0.186 1.186 22 H -0.213 1.213 23 C 0.090 3.910 24 C -0.048 4.048 25 N -0.191 5.191 26 H 0.095 0.905 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.159 0.841 30 H 0.194 0.806 31 H 0.179 0.821 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.996 6.333 -15.164 16.554 hybrid contribution 0.370 -0.086 1.366 1.417 sum 2.366 6.247 -13.798 15.330 Atomic orbital electron populations 1.22411 0.92217 1.03640 1.04622 1.22162 0.95795 0.97135 0.82663 0.86163 1.86240 1.80864 1.36994 1.17343 1.19176 0.94539 0.89721 0.87233 1.20854 1.04116 1.02552 0.91579 1.21188 0.94975 0.92023 0.97528 1.21395 1.03766 0.97268 0.98423 1.17562 0.98275 0.78468 0.95083 1.91497 1.88678 1.34774 1.97079 1.21324 1.11082 0.94629 1.00738 1.20406 0.84397 0.86614 0.84998 1.90545 1.49461 1.22279 1.86407 1.43723 1.47098 1.19946 1.05987 1.19791 1.24392 1.17702 0.84129 0.89610 1.25909 0.96536 0.96503 1.00630 1.69733 1.25880 1.33188 1.24857 0.84834 0.77812 0.78501 0.76987 1.19700 1.18560 1.21310 1.19299 0.80432 0.87026 1.04216 1.29287 0.94227 0.92112 0.89213 1.80926 1.15967 1.08753 1.13444 0.90547 0.88257 0.92706 0.84104 0.80625 0.82053 0.83329 0.91165 0.84486 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 8.96 71.98 0.65 -4.70 16 2 C 0.08 2.81 1.79 29.85 0.05 2.86 16 3 H 0.12 3.28 4.97 -2.39 -0.01 3.27 16 4 O -0.30 -10.68 9.35 -73.56 -0.69 -11.37 16 5 C 0.14 3.86 6.62 22.50 0.15 4.01 16 6 C -0.17 -3.88 9.99 22.37 0.22 -3.66 16 7 C -0.04 -0.62 10.04 22.25 0.22 -0.40 16 8 C -0.19 -3.17 10.02 22.33 0.22 -2.95 16 9 C 0.13 2.72 7.30 22.36 0.16 2.88 16 10 F -0.14 -3.17 17.27 44.97 0.78 -2.40 16 11 C -0.26 -6.26 8.35 22.41 0.19 -6.07 16 12 C 0.45 20.47 6.98 87.66 0.61 21.08 16 13 O -0.60 -33.27 16.18 15.69 0.25 -33.02 16 14 N -0.45 -20.46 2.59 -645.41 -1.67 -22.13 16 15 C -0.33 -17.08 9.45 84.04 0.79 -16.29 16 16 H 0.09 4.78 7.29 -2.91 -0.02 4.76 16 17 C 0.01 0.25 5.19 84.93 0.44 0.69 16 18 N -0.90 -42.67 8.40 21.66 0.18 -42.48 16 19 Si 0.99 39.65 29.57 68.60 2.03 41.68 16 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 22 H -0.29 -11.68 7.11 99.48 0.71 -10.98 16 23 C 0.22 8.10 4.75 84.57 0.40 8.50 16 24 C 0.27 11.33 10.45 89.44 0.93 12.26 16 25 N -0.51 -23.41 18.53 20.01 0.37 -23.04 16 26 H 0.08 2.49 3.81 -2.39 -0.01 2.48 16 27 H 0.10 2.46 7.20 -2.39 -0.02 2.44 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 31 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.15 3.27 5.52 -2.91 -0.02 3.26 16 33 H 0.28 12.76 8.31 -92.71 -0.77 11.99 16 34 H 0.14 5.24 6.34 -2.38 -0.02 5.23 16 35 H 0.13 3.36 5.67 -2.39 -0.01 3.35 16 Total: -1.00 -67.48 304.53 7.46 -60.02 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.16 Total: 14.53 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 5.05 Total: 18.21 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -1.12 Total: -87.66 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.43 Total: -44.39 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -67.48 7.46 -60.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126600212.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.226 kcal (2) G-P(sol) polarization free energy of solvation -67.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds