Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46399 * 2 1 4 4 O 1.42898 * 109.47065 * 119.99741 * 2 1 3 5 5 C 1.35896 * 117.00234 * 276.27357 * 4 2 1 6 6 C 1.38774 * 120.04231 * 175.80180 * 5 4 2 7 7 C 1.38128 * 119.99385 * 179.97438 * 6 5 4 8 8 C 1.38253 * 120.08181 * 359.97438 * 7 6 5 9 9 C 1.38476 * 120.08350 * 0.04288 * 8 7 6 10 10 F 1.35103 * 119.99865 * 179.97438 * 9 8 7 11 11 C 1.38385 * 120.00735 * 359.70235 * 9 8 7 12 12 C 1.50696 * 109.47298 * 240.00272 * 2 1 3 13 13 O 1.21293 * 119.99693 * 257.00147 * 12 2 1 14 14 N 1.34780 * 120.00048 * 76.99909 * 12 2 1 15 15 C 1.37094 * 119.99573 * 185.51763 * 14 12 2 16 16 H 1.07996 * 120.00554 * 1.65743 * 15 14 12 17 17 C 1.38959 * 119.99573 * 181.65510 * 15 14 12 18 18 N 1.31409 * 119.99973 * 332.59477 * 17 15 14 19 19 Si 1.86801 * 119.99878 * 152.59379 * 17 15 14 20 20 H 1.48497 * 109.47194 * 95.00014 * 19 17 15 21 21 H 1.48500 * 109.47002 * 215.00050 * 19 17 15 22 22 H 1.48508 * 109.47114 * 335.00113 * 19 17 15 23 23 C 1.46497 * 120.00188 * 5.51616 * 14 12 2 24 24 C 1.47205 * 109.47055 * 264.11288 * 23 14 12 25 25 N 4.23079 * 54.60033 * 295.25283 * 2 1 3 26 26 H 1.08995 * 109.47174 * 53.40213 * 1 2 3 27 27 H 1.08992 * 109.47517 * 293.39109 * 1 2 3 28 28 H 1.09011 * 109.46890 * 173.39814 * 1 2 3 29 29 H 1.07999 * 120.00196 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.96241 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.95690 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.04666 * 180.27437 * 11 9 8 33 33 H 0.97004 * 119.99455 * 180.02562 * 18 17 15 34 34 H 1.09005 * 109.46614 * 24.10932 * 23 14 12 35 35 H 1.08994 * 109.47008 * 144.11120 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0873 0.0559 2.3105 6 6 2.4581 -0.5556 3.4998 7 6 2.5405 0.1869 4.6616 8 6 2.2545 1.5394 4.6414 9 6 1.8838 2.1528 3.4566 10 9 1.6042 3.4745 3.4390 11 6 1.8052 1.4135 2.2895 12 6 2.0324 -0.7103 -1.2305 13 8 2.4573 -1.8432 -1.1456 14 7 2.0095 -0.0868 -2.4251 15 6 2.3595 -0.7694 -3.5613 16 1 2.6277 -1.8139 -3.5029 17 6 2.3691 -0.1173 -4.7884 18 7 1.5786 0.9127 -4.9912 19 14 3.5056 -0.7048 -6.1495 20 1 2.7669 -1.6294 -7.0465 21 1 3.9876 0.4627 -6.9303 22 1 4.6658 -1.4149 -5.5535 23 6 1.6106 1.3203 -2.5095 24 6 0.1818 1.4055 -2.8535 25 7 -0.9207 1.4712 -3.1191 26 1 -0.3633 0.6127 -0.8250 27 1 -0.3634 0.4079 0.9431 28 1 -0.3633 -1.0210 -0.1182 29 1 2.6822 -1.6120 3.5169 30 1 2.8288 -0.2896 5.5870 31 1 2.3200 2.1181 5.5509 32 1 1.5205 1.8922 1.3642 33 1 1.5851 1.3676 -5.8480 34 1 1.7824 1.8048 -1.5483 35 1 2.1999 1.8195 -3.2786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126600444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = -37.254350 kcal Electronic energy + Delta-G solvation = -23033.119302 eV Core-core repulsion = 19333.628561 eV Total energy + Delta-G solvation = -3699.490741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.98389 -40.42598 -38.90332 -37.15680 -35.88594 -34.45498 -32.46788 -31.32540 -30.70432 -29.57065 -27.63733 -25.55247 -24.10725 -22.76835 -22.21496 -19.55266 -18.68294 -18.13236 -16.82442 -16.55635 -16.32432 -16.19841 -15.82660 -15.58235 -15.14576 -14.99916 -14.35321 -14.06219 -13.79984 -13.58369 -13.39877 -13.06754 -12.72389 -12.37909 -12.17161 -11.95551 -11.83468 -11.74515 -11.59800 -11.35882 -11.27160 -11.13047 -10.86036 -10.60937 -10.45936 -10.32210 -9.30247 -9.02690 -8.70379 -8.31746 -8.25011 -6.68876 -4.05991 1.04937 1.21445 2.95194 2.99677 3.17477 3.26707 3.38103 3.51467 3.67650 3.84656 4.03089 4.13100 4.55309 4.67257 4.68560 4.80376 4.90954 5.00609 5.07514 5.15243 5.22467 5.39694 5.40953 5.76546 5.79554 5.87548 5.94569 5.96906 6.16710 6.21808 6.30988 6.50065 6.62497 7.31148 7.37097 7.70662 8.13469 8.61052 8.84140 9.02902 9.53741 10.35802 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022784 B = 0.004358 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.611558 B = 6423.736579 C = 6966.781078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.087 0.913 4 O -0.274 6.274 5 C 0.170 3.830 6 C -0.165 4.165 7 C -0.052 4.052 8 C -0.202 4.202 9 C 0.140 3.860 10 F -0.139 7.139 11 C -0.254 4.254 12 C 0.454 3.546 13 O -0.552 6.552 14 N -0.434 5.434 15 C -0.316 4.316 16 H 0.115 0.885 17 C 0.037 3.963 18 N -0.871 5.871 19 Si 0.925 3.075 20 H -0.278 1.278 21 H -0.279 1.279 22 H -0.265 1.265 23 C 0.208 3.792 24 C 0.249 3.751 25 N -0.470 5.470 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.276 0.724 34 H 0.079 0.921 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 4.402 14.234 15.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 H 0.105 0.895 4 O -0.185 6.185 5 C 0.123 3.877 6 C -0.183 4.183 7 C -0.070 4.070 8 C -0.221 4.221 9 C 0.120 3.880 10 F -0.117 7.117 11 C -0.274 4.274 12 C 0.242 3.758 13 O -0.433 6.433 14 N -0.155 5.155 15 C -0.442 4.442 16 H 0.133 0.867 17 C -0.167 4.167 18 N -0.510 5.510 19 Si 0.751 3.249 20 H -0.204 1.204 21 H -0.205 1.205 22 H -0.190 1.190 23 C 0.081 3.919 24 C -0.069 4.069 25 N -0.150 5.150 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.148 3.885 13.655 14.243 hybrid contribution 0.601 0.415 -0.926 1.180 sum 1.749 4.300 12.729 13.549 Atomic orbital electron populations 1.22323 0.93142 1.04505 1.03179 1.22431 0.95446 0.96744 0.84526 0.89516 1.86298 1.79499 1.37470 1.15240 1.18911 0.92440 0.89034 0.87312 1.20552 1.06333 1.01529 0.89931 1.20774 0.95913 0.92612 0.97688 1.20989 1.07718 0.96183 0.97224 1.17382 0.98805 0.77573 0.94222 1.91503 1.91044 1.31873 1.97288 1.21271 1.12400 0.94428 0.99271 1.19282 0.85763 0.87395 0.83411 1.90588 1.49360 1.18452 1.84896 1.43677 1.57457 1.08411 1.05971 1.19769 1.43497 0.97516 0.83415 0.86714 1.25240 0.96452 0.96383 0.98615 1.69929 1.32400 1.22950 1.25708 0.85934 0.80783 0.78460 0.79744 1.20391 1.20471 1.18951 1.19285 0.84960 0.85808 1.01885 1.29158 0.94526 0.92564 0.90660 1.80935 1.14186 1.08447 1.11411 0.90286 0.91419 0.90712 0.84335 0.84439 0.84879 0.83900 0.91298 0.90279 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.21 37.16 0.34 -2.49 16 2 C 0.07 1.19 1.92 -27.88 -0.05 1.14 16 3 H 0.09 1.28 4.06 -51.93 -0.21 1.07 16 4 O -0.27 -4.84 9.40 -38.72 -0.36 -5.20 16 5 C 0.17 2.46 6.49 -39.22 -0.25 2.21 16 6 C -0.16 -1.99 9.99 -39.42 -0.39 -2.38 16 7 C -0.05 -0.50 10.04 -39.62 -0.40 -0.90 16 8 C -0.20 -2.08 10.02 -39.49 -0.40 -2.48 16 9 C 0.14 1.72 7.30 -39.44 -0.29 1.43 16 10 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 11 C -0.25 -3.37 8.44 -39.37 -0.33 -3.70 16 12 C 0.45 10.16 6.89 -10.99 -0.08 10.08 16 13 O -0.55 -14.48 16.18 -13.76 -0.22 -14.71 16 14 N -0.43 -9.79 2.60 -117.93 -0.31 -10.10 16 15 C -0.32 -7.91 9.41 -14.93 -0.14 -8.05 16 16 H 0.12 3.07 7.31 -52.49 -0.38 2.69 16 17 C 0.04 0.88 5.01 -17.47 -0.09 0.79 16 18 N -0.87 -20.67 8.95 55.50 0.50 -20.17 16 19 Si 0.93 18.98 29.63 -169.99 -5.04 13.94 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C 0.21 3.97 4.93 -6.83 -0.03 3.94 16 24 C 0.25 5.24 11.15 -20.76 -0.23 5.01 16 25 N -0.47 -10.64 18.41 42.16 0.78 -9.86 16 26 H 0.08 1.35 4.99 -51.93 -0.26 1.09 16 27 H 0.07 0.94 7.48 -51.93 -0.39 0.55 16 28 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.78 5.78 -52.49 -0.30 1.48 16 33 H 0.28 6.31 8.31 -40.82 -0.34 5.97 16 34 H 0.08 1.16 5.84 -51.93 -0.30 0.85 16 35 H 0.14 2.77 6.09 -51.93 -0.32 2.45 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -29.73 306.71 -5.33 -35.06 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.99 Total: 3.54 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.34 Total: 4.59 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.97 Total: -40.14 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.59 Total: -19.91 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.04 Total: 13.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.73 -5.33 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126600444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.192 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds