Wall clock time and date at job start Tue Mar 31 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46399 * 2 1 4 4 O 1.42898 * 109.47065 * 119.99741 * 2 1 3 5 5 C 1.35896 * 117.00234 * 276.27357 * 4 2 1 6 6 C 1.38774 * 120.04231 * 175.80180 * 5 4 2 7 7 C 1.38128 * 119.99385 * 179.97438 * 6 5 4 8 8 C 1.38253 * 120.08181 * 359.97438 * 7 6 5 9 9 C 1.38476 * 120.08350 * 0.04288 * 8 7 6 10 10 F 1.35103 * 119.99865 * 179.97438 * 9 8 7 11 11 C 1.38385 * 120.00735 * 359.70235 * 9 8 7 12 12 C 1.50696 * 109.47298 * 240.00272 * 2 1 3 13 13 O 1.21293 * 119.99693 * 257.00147 * 12 2 1 14 14 N 1.34780 * 120.00048 * 76.99909 * 12 2 1 15 15 C 1.37094 * 119.99573 * 185.51763 * 14 12 2 16 16 H 1.07996 * 120.00554 * 1.65743 * 15 14 12 17 17 C 1.38959 * 119.99573 * 181.65510 * 15 14 12 18 18 N 1.31409 * 119.99973 * 332.59477 * 17 15 14 19 19 Si 1.86801 * 119.99878 * 152.59379 * 17 15 14 20 20 H 1.48497 * 109.47194 * 95.00014 * 19 17 15 21 21 H 1.48500 * 109.47002 * 215.00050 * 19 17 15 22 22 H 1.48508 * 109.47114 * 335.00113 * 19 17 15 23 23 C 1.46497 * 120.00188 * 5.51616 * 14 12 2 24 24 C 1.47205 * 109.47055 * 264.11288 * 23 14 12 25 25 N 4.23079 * 54.60033 * 295.25283 * 2 1 3 26 26 H 1.08995 * 109.47174 * 53.40213 * 1 2 3 27 27 H 1.08992 * 109.47517 * 293.39109 * 1 2 3 28 28 H 1.09011 * 109.46890 * 173.39814 * 1 2 3 29 29 H 1.07999 * 120.00196 * 359.97438 * 6 5 4 30 30 H 1.08000 * 119.96241 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.95690 * 180.02562 * 8 7 6 32 32 H 1.08001 * 120.04666 * 180.27437 * 11 9 8 33 33 H 0.97004 * 119.99455 * 180.02562 * 18 17 15 34 34 H 1.09005 * 109.46614 * 24.10932 * 23 14 12 35 35 H 1.08994 * 109.47008 * 144.11120 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0873 0.0559 2.3105 6 6 2.4581 -0.5556 3.4998 7 6 2.5405 0.1869 4.6616 8 6 2.2545 1.5394 4.6414 9 6 1.8838 2.1528 3.4566 10 9 1.6042 3.4745 3.4390 11 6 1.8052 1.4135 2.2895 12 6 2.0324 -0.7103 -1.2305 13 8 2.4573 -1.8432 -1.1456 14 7 2.0095 -0.0868 -2.4251 15 6 2.3595 -0.7694 -3.5613 16 1 2.6277 -1.8139 -3.5029 17 6 2.3691 -0.1173 -4.7884 18 7 1.5786 0.9127 -4.9912 19 14 3.5056 -0.7048 -6.1495 20 1 2.7669 -1.6294 -7.0465 21 1 3.9876 0.4627 -6.9303 22 1 4.6658 -1.4149 -5.5535 23 6 1.6106 1.3203 -2.5095 24 6 0.1818 1.4055 -2.8535 25 7 -0.9207 1.4712 -3.1191 26 1 -0.3633 0.6127 -0.8250 27 1 -0.3634 0.4079 0.9431 28 1 -0.3633 -1.0210 -0.1182 29 1 2.6822 -1.6120 3.5169 30 1 2.8288 -0.2896 5.5870 31 1 2.3200 2.1181 5.5509 32 1 1.5205 1.8922 1.3642 33 1 1.5851 1.3676 -5.8480 34 1 1.7824 1.8048 -1.5483 35 1 2.1999 1.8195 -3.2786 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126600444.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:40 Heat of formation + Delta-G solvation = -53.722170 kcal Electronic energy + Delta-G solvation = -23033.833400 eV Core-core repulsion = 19333.628561 eV Total energy + Delta-G solvation = -3700.204839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.91177 -41.70332 -40.36523 -38.31091 -37.62318 -36.23607 -34.15775 -32.77540 -31.62985 -30.57375 -29.30960 -27.25011 -25.45085 -23.77377 -23.32359 -21.06233 -20.06041 -19.65997 -18.24740 -18.03588 -17.70240 -17.16614 -16.90906 -16.68733 -16.56703 -16.32865 -15.95604 -15.30511 -15.16139 -15.08575 -14.84170 -14.31717 -14.01563 -13.85720 -13.61945 -13.44672 -13.29300 -13.17408 -12.93768 -12.88186 -12.52785 -12.36445 -12.28659 -12.22348 -12.09703 -11.78152 -11.11709 -10.47287 -10.13811 -9.91475 -9.26403 -8.52296 -5.96346 0.15428 0.29875 1.30950 1.45354 1.54774 1.67446 1.74810 2.07398 2.18886 2.35107 2.61869 2.86856 3.03848 3.20362 3.43018 3.57621 3.64755 3.85310 3.88711 4.01301 4.09371 4.30375 4.38089 4.46849 4.51101 4.66461 4.90449 4.96647 5.03474 5.10759 5.26097 5.37483 5.43716 5.71159 5.86352 6.24155 6.37623 6.92680 7.01450 7.21891 7.76364 8.50368 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022784 B = 0.004358 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.611558 B = 6423.736579 C = 6966.781078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.081 3.919 3 H 0.116 0.884 4 O -0.301 6.301 5 C 0.140 3.860 6 C -0.171 4.171 7 C -0.039 4.039 8 C -0.190 4.190 9 C 0.125 3.875 10 F -0.142 7.142 11 C -0.260 4.260 12 C 0.445 3.555 13 O -0.603 6.603 14 N -0.441 5.441 15 C -0.351 4.351 16 H 0.085 0.915 17 C 0.017 3.983 18 N -0.878 5.878 19 Si 0.983 3.017 20 H -0.283 1.283 21 H -0.264 1.264 22 H -0.272 1.272 23 C 0.207 3.793 24 C 0.261 3.739 25 N -0.499 5.499 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.143 0.857 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.281 0.719 34 H 0.129 0.871 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 5.950 16.009 17.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.022 3.978 3 H 0.134 0.866 4 O -0.214 6.214 5 C 0.094 3.906 6 C -0.190 4.190 7 C -0.056 4.056 8 C -0.209 4.209 9 C 0.106 3.894 10 F -0.121 7.121 11 C -0.280 4.280 12 C 0.234 3.766 13 O -0.487 6.487 14 N -0.161 5.161 15 C -0.477 4.477 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.516 5.516 19 Si 0.806 3.194 20 H -0.209 1.209 21 H -0.188 1.188 22 H -0.196 1.196 23 C 0.081 3.919 24 C -0.056 4.056 25 N -0.180 5.180 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.161 0.839 30 H 0.195 0.805 31 H 0.179 0.821 32 H 0.164 0.836 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.657 5.479 15.436 16.463 hybrid contribution 0.450 -0.067 -1.368 1.442 sum 2.108 5.412 14.067 15.219 Atomic orbital electron populations 1.22242 0.92329 1.03343 1.04293 1.22191 0.95717 0.97104 0.82833 0.86632 1.86250 1.80457 1.38618 1.16043 1.19175 0.94882 0.89670 0.86869 1.20850 1.05932 1.02183 0.90034 1.21194 0.94076 0.92243 0.98123 1.21394 1.05436 0.96564 0.97465 1.17570 0.99594 0.77501 0.94726 1.91496 1.91177 1.32097 1.97327 1.21296 1.12617 0.94043 1.00008 1.20161 0.84572 0.87128 0.84717 1.90541 1.51417 1.20840 1.85939 1.43766 1.57173 1.09589 1.05576 1.19608 1.46017 0.97039 0.85081 0.89728 1.25795 0.96692 0.96422 0.99728 1.69982 1.32173 1.23124 1.26329 0.85101 0.78728 0.78275 0.77268 1.20944 1.18779 1.19649 1.19535 0.83645 0.84197 1.04514 1.29471 0.94753 0.91648 0.89757 1.80935 1.15155 1.09382 1.12547 0.90975 0.88672 0.92643 0.83935 0.80549 0.82051 0.83619 0.90845 0.85378 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.21 71.98 0.66 -4.62 16 2 C 0.08 2.81 1.92 29.85 0.06 2.87 16 3 H 0.12 3.23 4.06 -2.39 -0.01 3.22 16 4 O -0.30 -10.65 9.40 -73.92 -0.69 -11.35 16 5 C 0.14 3.88 6.49 22.50 0.15 4.02 16 6 C -0.17 -3.81 9.99 22.37 0.22 -3.58 16 7 C -0.04 -0.60 10.04 22.25 0.22 -0.38 16 8 C -0.19 -3.18 10.02 22.33 0.22 -2.96 16 9 C 0.13 2.75 7.30 22.36 0.16 2.92 16 10 F -0.14 -3.26 17.27 44.97 0.78 -2.48 16 11 C -0.26 -6.42 8.44 22.41 0.19 -6.23 16 12 C 0.45 20.39 6.89 87.66 0.60 20.99 16 13 O -0.60 -33.14 16.18 15.39 0.25 -32.89 16 14 N -0.44 -20.18 2.60 -645.41 -1.68 -21.86 16 15 C -0.35 -18.08 9.41 84.04 0.79 -17.29 16 16 H 0.08 4.79 7.31 -2.91 -0.02 4.77 16 17 C 0.02 0.82 5.01 84.93 0.43 1.24 16 18 N -0.88 -41.16 8.95 21.67 0.19 -40.97 16 19 Si 0.98 38.97 29.63 68.60 2.03 41.00 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 C 0.21 7.73 4.93 84.58 0.42 8.15 16 24 C 0.26 10.83 11.15 89.44 1.00 11.82 16 25 N -0.50 -22.44 18.41 20.01 0.37 -22.07 16 26 H 0.07 2.41 4.99 -2.39 -0.01 2.40 16 27 H 0.09 2.50 7.48 -2.39 -0.02 2.49 16 28 H 0.05 1.97 8.14 -2.38 -0.02 1.96 16 29 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 30 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.15 3.34 5.78 -2.91 -0.02 3.32 16 33 H 0.28 12.52 8.31 -92.70 -0.77 11.75 16 34 H 0.13 3.45 5.84 -2.38 -0.01 3.44 16 35 H 0.14 5.31 6.09 -2.39 -0.01 5.29 16 Total: -1.00 -66.56 306.71 7.53 -59.04 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 1.15 Total: 14.62 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 5.12 Total: 16.96 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -1.12 Total: -84.90 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -0.45 Total: -44.24 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -66.56 7.53 -59.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126600444.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.317 kcal (2) G-P(sol) polarization free energy of solvation -66.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds