Wall clock time and date at job start Tue Mar 31 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34321 * 126.44340 * 2 1 4 4 N 1.34478 * 107.66871 * 179.76479 * 3 2 1 5 5 C 1.30256 * 108.69838 * 0.41940 * 4 3 2 6 6 C 1.50706 * 125.61516 * 179.83879 * 5 4 3 7 7 N 1.46502 * 109.47065 * 89.69662 * 6 5 4 8 8 C 1.39925 * 120.00021 * 179.97438 * 7 6 5 9 9 C 1.38720 * 120.07752 * 359.97438 * 8 7 6 10 10 C 1.38207 * 120.01459 * 179.74295 * 9 8 7 11 11 C 1.38529 * 120.17940 * 0.23006 * 10 9 8 12 12 F 1.35101 * 119.92256 * 180.02562 * 11 10 9 13 13 C 1.38359 * 120.15915 * 0.02562 * 11 10 9 14 14 C 1.38732 * 119.97740 * 0.02562 * 13 11 10 15 15 O 1.35789 * 120.08501 * 179.97438 * 14 13 11 16 16 C 1.34806 * 117.00236 * 354.39746 * 15 14 13 17 17 H 1.07997 * 119.99616 * 5.06634 * 16 15 14 18 18 C 1.38625 * 120.00093 * 185.06433 * 16 15 14 19 19 N 1.31583 * 119.99874 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 120.00273 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47247 * 89.99830 * 20 18 16 22 22 H 1.48500 * 109.47378 * 210.00046 * 20 18 16 23 23 H 1.48499 * 109.46712 * 330.00052 * 20 18 16 24 24 O 1.33968 * 108.76174 * 359.57491 * 5 4 3 25 25 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47469 * 300.00413 * 1 2 3 27 27 H 1.09004 * 109.46892 * 60.00374 * 1 2 3 28 28 H 1.08008 * 126.16743 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47274 * 329.69116 * 6 5 4 30 30 H 1.09004 * 109.46762 * 209.69230 * 6 5 4 31 31 H 0.97005 * 119.99768 * 359.97438 * 7 6 5 32 32 H 1.08001 * 119.98908 * 0.02562 * 9 8 7 33 33 H 1.08003 * 119.91065 * 180.25204 * 10 9 8 34 34 H 1.07994 * 120.01363 * 179.97438 * 13 11 10 35 35 H 0.96999 * 119.99874 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6477 0.0053 5 6 3.5765 -0.6548 -0.0006 6 6 4.8005 -1.5340 -0.0011 7 7 5.1974 -1.8192 1.3800 8 6 6.3145 -2.6223 1.6353 9 6 7.0469 -3.1497 0.5819 10 6 8.1532 -3.9384 0.8355 11 6 8.5313 -4.2086 2.1405 12 9 9.6139 -4.9798 2.3824 13 6 7.8030 -3.6907 3.1967 14 6 6.6908 -2.8991 2.9496 15 8 5.9741 -2.3901 3.9846 16 6 6.3251 -2.7849 5.2248 17 1 7.1938 -3.4106 5.3667 18 6 5.5709 -2.3877 6.3181 19 7 5.9133 -2.7735 7.5286 20 14 4.0679 -1.3060 6.0727 21 1 2.8705 -2.1607 5.8710 22 1 3.8708 -0.4529 7.2721 23 1 4.2677 -0.4445 4.8798 24 8 2.3074 -1.0841 -0.0003 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.9822 2.1113 0.0004 29 1 5.6146 -1.0232 -0.5151 30 1 4.5761 -2.4688 -0.5150 31 1 4.6858 -1.4513 2.1175 32 1 6.7553 -2.9402 -0.4367 33 1 8.7246 -4.3448 0.0140 34 1 8.0996 -3.9033 4.2131 35 1 5.3858 -2.4953 8.2936 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128066677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:32 Heat of formation + Delta-G solvation = -37.578585 kcal Electronic energy + Delta-G solvation = -22373.628270 eV Core-core repulsion = 18674.123469 eV Total energy + Delta-G solvation = -3699.504801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.66729 -44.42928 -41.04730 -38.55100 -36.57450 -35.78709 -34.47161 -33.51581 -31.11146 -30.86546 -28.27876 -27.24017 -26.11804 -23.73387 -23.15926 -22.80957 -22.02284 -20.05197 -19.58938 -18.43753 -18.12095 -17.44471 -17.24560 -17.01355 -16.53243 -15.88955 -15.82120 -15.79178 -15.52622 -15.35397 -15.04415 -14.73531 -14.43117 -14.20959 -13.95992 -13.83545 -13.62190 -13.30558 -13.25645 -13.04456 -12.52477 -12.47710 -12.21241 -12.16933 -11.64570 -11.58186 -10.94336 -10.88353 -9.77530 -9.52343 -8.52145 -8.19248 -6.21292 0.25037 0.42482 0.54055 1.25757 1.29597 1.44693 1.47274 1.59291 2.22331 2.54633 2.69390 2.90799 2.98534 3.05083 3.57036 3.78179 3.95599 4.00428 4.15180 4.23859 4.29672 4.43324 4.51980 4.60163 4.64006 4.66586 4.96166 4.99719 5.13471 5.17565 5.24970 5.31774 5.40077 5.56903 5.84421 5.99188 6.35982 6.53971 6.62367 6.81791 7.53322 8.60012 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011182 B = 0.005724 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.442230 B = 4890.262456 C = 7125.490157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.039 4.039 3 C -0.066 4.066 4 N -0.488 5.488 5 C 0.157 3.843 6 C 0.232 3.768 7 N -0.749 5.749 8 C 0.160 3.840 9 C -0.124 4.124 10 C -0.152 4.152 11 C 0.066 3.934 12 F -0.156 7.156 13 C -0.237 4.237 14 C 0.089 3.911 15 O -0.237 6.237 16 C -0.392 4.392 17 H 0.078 0.922 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.969 3.031 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.264 1.264 24 O -0.209 6.209 25 H 0.082 0.918 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.210 0.790 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.395 0.605 32 H 0.177 0.823 33 H 0.165 0.835 34 H 0.114 0.886 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 4.809 -19.972 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.205 4.205 4 N -0.219 5.219 5 C -0.050 4.050 6 C 0.108 3.892 7 N -0.383 5.383 8 C 0.058 3.942 9 C -0.147 4.147 10 C -0.172 4.172 11 C 0.045 3.955 12 F -0.135 7.135 13 C -0.258 4.258 14 C 0.037 3.963 15 O -0.145 6.145 16 C -0.469 4.469 17 H 0.095 0.905 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.188 1.188 24 O -0.095 6.095 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.227 0.773 29 H 0.137 0.863 30 H 0.131 0.869 31 H 0.228 0.772 32 H 0.194 0.806 33 H 0.182 0.818 34 H 0.131 0.869 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.456 5.256 -19.946 22.691 hybrid contribution -0.645 -0.180 1.448 1.595 sum -10.100 5.077 -18.498 21.679 Atomic orbital electron populations 1.20560 0.80707 1.05373 1.05865 1.24440 0.96868 0.83840 1.04126 1.23613 0.87032 1.02056 1.07803 1.70431 1.24829 1.09784 1.16816 1.26316 0.84807 0.90366 1.03484 1.19709 0.87771 0.97220 0.84490 1.44335 1.30772 1.56576 1.06642 1.17221 0.90800 0.96602 0.89543 1.20535 0.95646 1.00455 0.98101 1.20904 0.99676 1.02645 0.93964 1.17427 0.86797 0.96960 0.94285 1.91395 1.52999 1.73503 1.95568 1.20905 0.99269 1.06109 0.99500 1.18745 0.92920 0.97043 0.87562 1.83438 1.54323 1.63098 1.13606 1.20620 1.13187 1.32566 0.80479 0.90480 1.25210 1.01403 0.98778 0.93287 1.69744 1.41653 1.46170 0.98846 0.85245 0.78450 0.78803 0.78355 1.19095 1.19401 1.18830 1.84429 1.18031 1.37581 1.69461 0.89916 0.87704 0.86596 0.77340 0.86349 0.86857 0.77153 0.80560 0.81776 0.86857 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.43 71.24 0.74 0.03 16 2 C -0.04 -0.81 7.39 24.79 0.18 -0.62 16 3 C -0.07 -1.48 11.80 83.39 0.98 -0.49 16 4 N -0.49 -13.81 11.29 -303.82 -3.43 -17.24 16 5 C 0.16 4.14 7.71 88.34 0.68 4.82 16 6 C 0.23 5.26 5.54 85.63 0.47 5.74 16 7 N -0.75 -24.02 5.72 -342.56 -1.96 -25.99 16 8 C 0.16 5.65 6.67 38.27 0.26 5.91 16 9 C -0.12 -3.36 9.31 22.38 0.21 -3.15 16 10 C -0.15 -4.41 10.02 22.33 0.22 -4.18 16 11 C 0.07 2.52 7.29 22.37 0.16 2.68 16 12 F -0.16 -5.92 17.26 44.97 0.78 -5.15 16 13 C -0.24 -10.80 9.14 22.42 0.20 -10.59 16 14 C 0.09 4.06 6.67 22.69 0.15 4.21 16 15 O -0.24 -12.50 7.83 -22.93 -0.18 -12.68 16 16 C -0.39 -23.10 9.95 67.91 0.68 -22.43 16 17 H 0.08 4.84 5.44 -2.91 -0.02 4.83 16 18 C 0.01 0.67 5.49 84.82 0.47 1.13 16 19 N -0.92 -55.64 13.96 21.61 0.30 -55.34 16 20 Si 0.97 45.50 28.62 68.60 1.96 47.46 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 24 O -0.21 -5.35 10.78 -3.72 -0.04 -5.39 16 25 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.21 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.12 2.23 7.95 -2.39 -0.02 2.21 16 30 H 0.11 1.93 7.95 -2.38 -0.02 1.91 16 31 H 0.40 14.78 7.83 -92.70 -0.73 14.06 16 32 H 0.18 3.02 6.73 -2.91 -0.02 3.00 16 33 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.11 5.81 5.64 -2.91 -0.02 5.80 16 35 H 0.28 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -73.07 314.60 3.27 -69.79 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.43 Total: 21.47 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 5.41 Total: -16.94 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -5.09 Total: -98.57 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.22 Total: -18.07 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.78 Total: -5.15 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.96 Total: 47.46 kcal Total: -73.07 3.27 -69.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128066677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.214 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds