Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35450 * 126.77402 * 2 1 4 4 C 1.41380 * 103.98418 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.80154 * 179.97438 * 4 3 2 6 6 N 1.46504 * 109.47060 * 95.00182 * 5 4 3 7 7 C 1.39923 * 120.00334 * 180.27242 * 6 5 4 8 8 C 1.38723 * 120.07488 * 359.45227 * 7 6 5 9 9 C 1.38217 * 120.01188 * 179.74609 * 8 7 6 10 10 C 1.38529 * 120.17410 * 0.54956 * 9 8 7 11 11 F 1.35106 * 119.91697 * 179.72582 * 10 9 8 12 12 C 1.38348 * 120.16484 * 359.70457 * 10 9 8 13 13 C 1.38727 * 119.98040 * 0.02562 * 12 10 9 14 14 O 1.35790 * 120.09112 * 179.97438 * 13 12 10 15 15 C 1.34804 * 116.99743 * 354.39797 * 14 13 12 16 16 H 1.08000 * 120.00078 * 5.06493 * 15 14 13 17 17 C 1.38627 * 119.99810 * 185.06426 * 15 14 13 18 18 N 1.31586 * 119.99922 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 120.00341 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47183 * 90.00243 * 19 17 15 21 21 H 1.48494 * 109.47436 * 210.00261 * 19 17 15 22 22 H 1.48505 * 109.46821 * 330.00160 * 19 17 15 23 23 N 1.30176 * 106.39371 * 0.26134 * 4 3 2 24 24 O 1.20912 * 111.60740 * 359.53613 * 23 4 3 25 25 H 1.09003 * 109.46718 * 90.00475 * 1 2 3 26 26 H 1.08998 * 109.47272 * 209.99867 * 1 2 3 27 27 H 1.09000 * 109.47670 * 330.00377 * 1 2 3 28 28 H 1.08002 * 128.00898 * 359.94075 * 3 2 1 29 29 H 1.09000 * 109.47153 * 335.00265 * 5 4 3 30 30 H 1.08996 * 109.47188 * 215.00145 * 5 4 3 31 31 H 0.97001 * 119.99676 * 0.02562 * 6 5 4 32 32 H 1.07997 * 119.99329 * 359.97438 * 8 7 6 33 33 H 1.08001 * 119.90637 * 180.27963 * 9 8 7 34 34 H 1.07993 * 120.01179 * 180.02562 * 12 10 9 35 35 H 0.96994 * 119.99836 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 0.0006 5 6 4.9210 1.3001 0.0003 6 7 5.4029 1.4444 1.3763 7 6 6.5976 2.1265 1.6314 8 6 7.3330 2.6571 0.5816 9 6 8.5103 3.3353 0.8354 10 6 8.9653 3.4776 2.1361 11 9 10.1197 4.1367 2.3778 12 6 8.2405 2.9468 3.1881 13 6 7.0551 2.2697 2.9414 14 8 6.3421 1.7474 3.9723 15 6 6.8971 1.8193 5.1987 16 1 7.8277 2.3489 5.3400 17 6 6.2733 1.2135 6.2784 18 7 6.8148 1.2842 7.4756 19 14 4.6634 0.2982 6.0340 20 1 4.9462 -1.1247 5.7170 21 1 3.8555 0.3771 7.2774 22 1 3.9088 0.9146 4.9134 23 7 3.4763 -0.7563 -0.0048 24 8 2.3096 -1.0736 0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 2.0344 2.1271 -0.0009 29 1 4.7630 2.2870 -0.4346 30 1 5.6606 0.7576 -0.5886 31 1 4.8918 1.0700 2.1109 32 1 6.9836 2.5434 -0.4340 33 1 9.0791 3.7516 0.0171 34 1 8.5973 3.0595 4.2012 35 1 6.3782 0.8607 8.2310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000150771108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = 0.605975 kcal Electronic energy + Delta-G solvation = -22360.916068 eV Core-core repulsion = 18663.067073 eV Total energy + Delta-G solvation = -3697.848994 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.68294 -46.00924 -41.06074 -38.59714 -36.91742 -34.82631 -34.47401 -34.07540 -31.12682 -30.26441 -28.66169 -27.38865 -27.08182 -24.22821 -23.43289 -22.83877 -21.11789 -20.05608 -19.52559 -18.75398 -18.31471 -17.79236 -17.40667 -17.07465 -16.54867 -15.92607 -15.85195 -15.72283 -15.43744 -15.24351 -15.05275 -14.83008 -14.30503 -14.21317 -13.95584 -13.79300 -13.56359 -13.33697 -13.16604 -13.06954 -12.58537 -12.21998 -12.19033 -12.11030 -11.61390 -11.31257 -10.95464 -10.84558 -10.29379 -9.54139 -8.52958 -8.17775 -6.22217 0.40847 0.45471 0.52371 1.06345 1.25376 1.30078 1.43835 2.19583 2.21714 2.58990 2.68134 2.90836 3.03188 3.09251 3.47366 3.55502 3.94312 4.07541 4.20086 4.21912 4.29816 4.42664 4.52420 4.61924 4.66616 4.74423 4.90794 4.95616 4.98956 5.16428 5.24922 5.30111 5.38167 5.56188 5.83451 5.99598 6.38946 6.59686 6.80877 7.24192 7.52248 8.59211 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.005639 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.378457 B = 4964.255039 C = 7195.098396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.031 4.031 3 C -0.229 4.229 4 C -0.010 4.010 5 C 0.211 3.789 6 N -0.746 5.746 7 C 0.160 3.840 8 C -0.128 4.128 9 C -0.152 4.152 10 C 0.065 3.935 11 F -0.156 7.156 12 C -0.236 4.236 13 C 0.088 3.912 14 O -0.236 6.236 15 C -0.393 4.393 16 H 0.077 0.923 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.969 3.031 20 H -0.273 1.273 21 H -0.267 1.267 22 H -0.259 1.259 23 N -0.387 5.387 24 O 0.091 5.909 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.198 0.802 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.394 0.606 32 H 0.172 0.828 33 H 0.163 0.837 34 H 0.114 0.886 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 0.492 -19.711 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 C -0.251 4.251 4 C -0.168 4.168 5 C 0.087 3.913 6 N -0.379 5.379 7 C 0.058 3.942 8 C -0.151 4.151 9 C -0.172 4.172 10 C 0.044 3.956 11 F -0.135 7.135 12 C -0.257 4.257 13 C 0.036 3.964 14 O -0.144 6.144 15 C -0.470 4.470 16 H 0.095 0.905 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.792 3.208 20 H -0.198 1.198 21 H -0.191 1.191 22 H -0.183 1.183 23 N -0.091 5.091 24 O 0.023 5.977 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.127 0.873 28 H 0.215 0.785 29 H 0.129 0.871 30 H 0.098 0.902 31 H 0.227 0.773 32 H 0.190 0.810 33 H 0.181 0.819 34 H 0.132 0.868 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.426 -0.673 -19.702 23.303 hybrid contribution -0.115 0.375 1.378 1.433 sum -12.542 -0.297 -18.324 22.207 Atomic orbital electron populations 1.20596 0.80679 1.05978 1.05754 1.25369 0.98138 0.85138 1.00750 1.22801 0.90098 1.02562 1.09593 1.23798 0.98460 0.90028 1.04471 1.19622 0.88597 0.99399 0.83665 1.44385 1.23317 1.62635 1.07559 1.17280 0.89489 0.97975 0.89485 1.20491 0.95070 1.01463 0.98051 1.20891 0.98496 1.03751 0.94066 1.17402 0.84269 0.99627 0.94338 1.91394 1.47295 1.79220 1.95546 1.20904 0.98358 1.06918 0.99564 1.18745 0.92203 0.97844 0.87621 1.83435 1.43261 1.72966 1.14727 1.20621 1.08554 1.35662 0.82118 0.90547 1.25220 1.02494 0.97592 0.93370 1.69743 1.41434 1.45160 1.00071 0.85244 0.78464 0.78632 0.78495 1.19809 1.19120 1.18266 1.73895 0.97991 1.17514 1.19748 1.84789 1.11181 1.34468 1.67268 0.87204 0.89054 0.87295 0.78518 0.87112 0.90165 0.77287 0.81032 0.81905 0.86832 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.45 71.24 0.74 0.19 16 2 C -0.03 -0.54 7.49 25.04 0.19 -0.35 16 3 C -0.23 -4.35 11.06 22.40 0.25 -4.11 16 4 C -0.01 -0.24 6.70 43.58 0.29 0.05 16 5 C 0.21 4.93 5.50 85.63 0.47 5.41 16 6 N -0.75 -24.38 5.72 -342.57 -1.96 -26.34 16 7 C 0.16 5.81 6.67 38.27 0.26 6.06 16 8 C -0.13 -3.62 9.31 22.38 0.21 -3.41 16 9 C -0.15 -4.57 10.02 22.33 0.22 -4.35 16 10 C 0.06 2.51 7.29 22.37 0.16 2.67 16 11 F -0.16 -6.01 17.26 44.97 0.78 -5.23 16 12 C -0.24 -10.93 9.14 22.41 0.20 -10.72 16 13 C 0.09 4.05 6.67 22.69 0.15 4.20 16 14 O -0.24 -12.54 7.83 -22.92 -0.18 -12.72 16 15 C -0.39 -23.29 9.94 67.91 0.68 -22.62 16 16 H 0.08 4.83 5.44 -2.91 -0.02 4.82 16 17 C 0.01 0.67 5.49 84.82 0.47 1.14 16 18 N -0.92 -55.83 13.96 21.61 0.30 -55.53 16 19 Si 0.97 45.62 28.62 68.60 1.96 47.58 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 23 N -0.39 -11.22 12.07 -49.56 -0.60 -11.82 16 24 O 0.09 2.25 11.20 71.62 0.80 3.05 16 25 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.11 1.89 7.96 -2.39 -0.02 1.87 16 30 H 0.08 1.77 7.94 -2.39 -0.02 1.75 16 31 H 0.39 14.84 7.83 -92.71 -0.73 14.11 16 32 H 0.17 3.30 6.73 -2.91 -0.02 3.28 16 33 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.11 5.88 5.64 -2.91 -0.02 5.87 16 35 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -72.43 314.11 5.82 -66.61 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.43 Total: 20.26 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 4.29 Total: -25.85 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -2.26 Total: -93.69 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.62 Total: -9.67 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.78 Total: -5.23 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.96 Total: 47.58 kcal Total: -72.43 5.82 -66.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150771108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.214 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds