Wall clock time and date at job start Tue Mar 31 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 C 1.52992 * 109.47315 * 240.00072 * 2 1 3 5 5 C 1.50700 * 109.47084 * 119.99527 * 2 1 3 6 6 C 1.33855 * 124.51193 * 60.00420 * 5 2 1 7 7 C 1.37443 * 115.10654 * 180.02562 * 6 5 2 8 8 C 1.36761 * 113.28092 * 359.97438 * 7 6 5 9 9 C 1.46457 * 125.46319 * 180.02562 * 8 7 6 10 10 O 1.21739 * 120.00236 * 353.04676 * 9 8 7 11 11 N 1.34782 * 119.99784 * 173.04722 * 9 8 7 12 12 C 1.36880 * 120.00025 * 4.07771 * 11 9 8 13 13 H 1.07998 * 120.00339 * 308.19017 * 12 11 9 14 14 C 1.39011 * 119.99991 * 128.19646 * 12 11 9 15 15 N 1.31396 * 119.99724 * 3.96603 * 14 12 11 16 16 Si 1.86793 * 120.00044 * 183.97095 * 14 12 11 17 17 H 1.48493 * 109.47429 * 59.99624 * 16 14 12 18 18 H 1.48499 * 109.47170 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46885 * 299.99382 * 16 14 12 20 20 C 1.46503 * 119.99666 * 184.07753 * 11 9 8 21 21 C 1.47195 * 109.46868 * 84.62197 * 20 11 9 22 22 N 8.59631 * 134.65158 * 110.74487 * 2 1 3 23 23 S 1.70615 * 124.51966 * 240.31386 * 5 2 1 24 24 H 1.08996 * 109.47546 * 300.00026 * 1 2 3 25 25 H 1.09004 * 109.46784 * 60.00173 * 1 2 3 26 26 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46631 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47017 * 299.99577 * 3 2 1 29 29 H 1.08996 * 109.47330 * 60.00174 * 3 2 1 30 30 H 1.09006 * 109.47176 * 299.99787 * 4 2 1 31 31 H 1.08996 * 109.47482 * 59.99843 * 4 2 1 32 32 H 1.09005 * 109.47404 * 180.02562 * 4 2 1 33 33 H 1.08004 * 122.44556 * 359.97338 * 6 5 2 34 34 H 1.08006 * 123.35848 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00253 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46677 * 204.62082 * 20 11 9 37 37 H 1.09004 * 109.47066 * 324.61800 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7652 -1.9870 1.5314 7 6 2.3226 -2.4387 2.7037 8 6 3.0578 -1.4869 3.3547 9 6 3.7658 -1.6797 4.6222 10 8 3.6254 -2.7154 5.2464 11 7 4.5727 -0.7104 5.0976 12 6 4.6660 0.4863 4.4397 13 1 4.8810 0.5054 3.3815 14 6 4.4842 1.6770 5.1336 15 7 4.3003 1.6577 6.4345 16 14 4.5013 3.3043 4.2167 17 1 3.4178 3.3118 3.2013 18 1 4.2876 4.4161 5.1776 19 1 5.8128 3.4788 3.5425 20 6 5.3498 -0.9377 6.3185 21 6 6.6034 -1.6310 5.9802 22 7 7.5714 -2.1661 5.7189 23 16 3.0110 0.0077 2.4296 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.1555 -2.6159 0.8996 34 1 2.1936 -3.4453 3.0735 35 1 4.1730 2.4885 6.9187 36 1 5.5789 0.0195 6.7868 37 1 4.7705 -1.5507 7.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151300546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:24 Heat of formation + Delta-G solvation = 9.722921 kcal Electronic energy + Delta-G solvation = -21152.388164 eV Core-core repulsion = 18021.147686 eV Total energy + Delta-G solvation = -3131.240478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.95834 -38.14108 -35.97281 -35.20460 -34.76116 -31.93868 -29.18792 -27.38534 -27.16895 -27.10081 -25.30937 -23.70558 -20.53581 -19.97079 -18.88373 -17.30669 -17.12062 -15.94012 -15.40825 -15.17934 -14.75000 -14.38554 -14.22600 -13.78673 -13.72920 -13.40009 -12.95914 -12.55868 -12.48533 -12.29634 -12.10493 -12.08551 -11.72506 -11.62749 -11.53811 -11.45973 -11.41361 -11.09900 -10.90360 -10.80850 -10.73247 -10.62380 -10.50974 -9.86399 -9.18641 -8.93355 -8.02071 -7.77018 -7.63954 -6.78575 -4.69257 1.37500 2.44111 2.89434 3.01086 3.02763 3.04920 3.13260 3.36077 3.59986 3.83598 4.17999 4.57712 4.66866 4.80828 5.00409 5.08444 5.16125 5.48598 5.65537 5.66687 5.84108 5.88922 5.92836 5.93385 6.00960 6.09565 6.12767 6.26800 6.36329 6.39428 6.39626 6.70005 6.74546 6.95402 7.05111 7.12943 7.57909 7.91801 8.33988 8.63470 9.04735 9.50041 10.23798 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.006875 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.759213 B = 4071.724754 C = 5268.283317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.006 3.994 3 C -0.152 4.152 4 C -0.133 4.133 5 C -0.268 4.268 6 C -0.156 4.156 7 C -0.091 4.091 8 C -0.235 4.235 9 C 0.559 3.441 10 O -0.581 6.581 11 N -0.440 5.440 12 C -0.350 4.350 13 H 0.100 0.900 14 C 0.069 3.931 15 N -0.848 5.848 16 Si 0.905 3.095 17 H -0.255 1.255 18 H -0.275 1.275 19 H -0.264 1.264 20 C 0.203 3.797 21 C 0.215 3.785 22 N -0.472 5.472 23 S 0.297 5.703 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.282 0.718 36 H 0.149 0.851 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 3.584 -9.441 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.005 3.995 3 C -0.210 4.210 4 C -0.191 4.191 5 C -0.386 4.386 6 C -0.187 4.187 7 C -0.125 4.125 8 C -0.356 4.356 9 C 0.349 3.651 10 O -0.466 6.466 11 N -0.160 5.160 12 C -0.484 4.484 13 H 0.117 0.883 14 C -0.142 4.142 15 N -0.481 5.481 16 Si 0.729 3.271 17 H -0.179 1.179 18 H -0.200 1.200 19 H -0.189 1.189 20 C 0.076 3.924 21 C -0.103 4.103 22 N -0.152 5.152 23 S 0.573 5.427 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.136 0.864 34 H 0.153 0.847 35 H 0.093 0.907 36 H 0.166 0.834 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.503 3.860 -9.166 10.918 hybrid contribution -1.033 -0.531 -0.458 1.248 sum -5.535 3.329 -9.625 11.591 Atomic orbital electron populations 1.21857 0.93953 1.01886 1.01494 1.18957 0.95199 0.94190 0.91193 1.21989 1.01685 0.95168 1.02167 1.21850 1.01309 1.00110 0.95865 1.25492 1.08366 1.00485 1.04302 1.19546 1.05239 0.95413 0.98499 1.20475 0.97494 0.99821 0.94664 1.24539 1.09725 0.99340 1.02016 1.17432 0.79153 0.84249 0.84286 1.90695 1.66654 1.29174 1.60090 1.42977 1.36176 1.13211 1.23613 1.19277 1.52744 0.82462 0.93889 0.88313 1.25649 0.92864 1.00211 0.95522 1.69602 1.41791 1.29846 1.06830 0.86283 0.80308 0.80424 0.80120 1.17938 1.19978 1.18856 1.19166 0.82358 1.01096 0.89734 1.30652 0.94987 0.92045 0.92599 1.81001 1.13535 1.11803 1.08860 1.84419 1.40103 1.10138 1.07995 0.92453 0.92739 0.92561 0.91999 0.92126 0.91936 0.92575 0.92729 0.92499 0.86358 0.84657 0.90693 0.83420 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.33 37.16 0.31 -1.23 16 2 C 0.01 0.08 0.90 -155.66 -0.14 -0.06 16 3 C -0.15 -1.88 7.52 37.16 0.28 -1.60 16 4 C -0.13 -1.52 8.33 37.15 0.31 -1.21 16 5 C -0.27 -4.31 4.97 -35.85 -0.18 -4.49 16 6 C -0.16 -2.59 9.18 -41.41 -0.38 -2.97 16 7 C -0.09 -1.75 10.02 -40.41 -0.40 -2.16 16 8 C -0.24 -5.03 6.30 -36.81 -0.23 -5.26 16 9 C 0.56 13.41 7.54 -12.95 -0.10 13.31 16 10 O -0.58 -15.04 16.49 5.15 0.09 -14.95 16 11 N -0.44 -10.22 2.44 -119.50 -0.29 -10.51 16 12 C -0.35 -7.88 6.72 -15.01 -0.10 -7.98 16 13 H 0.10 2.17 5.49 -33.74 -0.19 1.99 16 14 C 0.07 1.50 5.34 -17.45 -0.09 1.41 16 15 N -0.85 -19.06 11.25 55.50 0.62 -18.44 16 16 Si 0.90 16.84 29.56 -169.99 -5.02 11.82 16 17 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 18 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 19 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 20 C 0.20 4.35 5.35 -6.83 -0.04 4.32 16 21 C 0.22 4.74 15.71 -20.75 -0.33 4.42 16 22 N -0.47 -10.89 18.54 42.17 0.78 -10.11 16 23 S 0.30 5.51 16.68 -107.50 -1.79 3.72 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 7.86 -51.93 -0.41 0.23 16 27 H 0.06 0.78 7.91 -51.93 -0.41 0.37 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 30 H 0.06 0.63 7.86 -51.93 -0.41 0.22 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.12 1.70 7.90 -52.48 -0.41 1.29 16 34 H 0.14 2.53 8.06 -52.48 -0.42 2.11 16 35 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 36 H 0.15 3.14 5.82 -51.93 -0.30 2.84 16 37 H 0.10 2.15 7.53 -51.93 -0.39 1.75 16 LS Contribution 327.82 15.07 4.94 4.94 Total: -1.00 -26.23 327.82 -6.37 -32.60 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.60 Total: 4.44 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.09 Total: -3.51 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 1.11 Total: -39.06 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.09 Total: -14.95 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.02 Total: 11.82 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.79 Total: 3.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.23 -6.37 -32.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151300546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.327 kcal (2) G-P(sol) polarization free energy of solvation -26.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds