Wall clock time and date at job start Tue Mar 31 2020 06:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46833 * 2 1 4 4 C 1.52992 * 109.47315 * 240.00072 * 2 1 3 5 5 C 1.50700 * 109.47084 * 119.99527 * 2 1 3 6 6 C 1.33855 * 124.51193 * 60.00420 * 5 2 1 7 7 C 1.37443 * 115.10654 * 180.02562 * 6 5 2 8 8 C 1.36761 * 113.28092 * 359.97438 * 7 6 5 9 9 C 1.46457 * 125.46319 * 180.02562 * 8 7 6 10 10 O 1.21739 * 120.00236 * 353.04676 * 9 8 7 11 11 N 1.34782 * 119.99784 * 173.04722 * 9 8 7 12 12 C 1.36880 * 120.00025 * 4.07771 * 11 9 8 13 13 H 1.07998 * 120.00339 * 308.19017 * 12 11 9 14 14 C 1.39011 * 119.99991 * 128.19646 * 12 11 9 15 15 N 1.31396 * 119.99724 * 3.96603 * 14 12 11 16 16 Si 1.86793 * 120.00044 * 183.97095 * 14 12 11 17 17 H 1.48493 * 109.47429 * 59.99624 * 16 14 12 18 18 H 1.48499 * 109.47170 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46885 * 299.99382 * 16 14 12 20 20 C 1.46503 * 119.99666 * 184.07753 * 11 9 8 21 21 C 1.47195 * 109.46868 * 84.62197 * 20 11 9 22 22 N 8.59631 * 134.65158 * 110.74487 * 2 1 3 23 23 S 1.70615 * 124.51966 * 240.31386 * 5 2 1 24 24 H 1.08996 * 109.47546 * 300.00026 * 1 2 3 25 25 H 1.09004 * 109.46784 * 60.00173 * 1 2 3 26 26 H 1.08998 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46631 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47017 * 299.99577 * 3 2 1 29 29 H 1.08996 * 109.47330 * 60.00174 * 3 2 1 30 30 H 1.09006 * 109.47176 * 299.99787 * 4 2 1 31 31 H 1.08996 * 109.47482 * 59.99843 * 4 2 1 32 32 H 1.09005 * 109.47404 * 180.02562 * 4 2 1 33 33 H 1.08004 * 122.44556 * 359.97338 * 6 5 2 34 34 H 1.08006 * 123.35848 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00253 * 180.02562 * 15 14 12 36 36 H 1.08999 * 109.46677 * 204.62082 * 20 11 9 37 37 H 1.09004 * 109.47066 * 324.61800 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7652 -1.9870 1.5314 7 6 2.3226 -2.4387 2.7037 8 6 3.0578 -1.4869 3.3547 9 6 3.7658 -1.6797 4.6222 10 8 3.6254 -2.7154 5.2464 11 7 4.5727 -0.7104 5.0976 12 6 4.6660 0.4863 4.4397 13 1 4.8810 0.5054 3.3815 14 6 4.4842 1.6770 5.1336 15 7 4.3003 1.6577 6.4345 16 14 4.5013 3.3043 4.2167 17 1 3.4178 3.3118 3.2013 18 1 4.2876 4.4161 5.1776 19 1 5.8128 3.4788 3.5425 20 6 5.3498 -0.9377 6.3185 21 6 6.6034 -1.6310 5.9802 22 7 7.5714 -2.1661 5.7189 23 16 3.0110 0.0077 2.4296 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 1.1555 -2.6159 0.8996 34 1 2.1936 -3.4453 3.0735 35 1 4.1730 2.4885 6.9187 36 1 5.5789 0.0195 6.7868 37 1 4.7705 -1.5507 7.0091 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151300546.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:24 Heat of formation + Delta-G solvation = -2.359191 kcal Electronic energy + Delta-G solvation = -21152.912083 eV Core-core repulsion = 18021.147686 eV Total energy + Delta-G solvation = -3131.764397 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70812 -39.39091 -37.69277 -36.68733 -36.42805 -33.67075 -30.78799 -28.79711 -28.19181 -28.03945 -26.99020 -25.18833 -22.15598 -21.19674 -20.51773 -19.00879 -18.49532 -17.65416 -17.03451 -16.70187 -16.25363 -15.84382 -15.57867 -15.10606 -14.98951 -14.80218 -14.65353 -14.04188 -13.85082 -13.80332 -13.52143 -13.37582 -13.20278 -13.09120 -12.94770 -12.79241 -12.51432 -12.50454 -12.30739 -12.14211 -11.99099 -11.79568 -11.73531 -11.35859 -10.82341 -10.65232 -9.72785 -9.25145 -9.13865 -8.45796 -6.43057 -0.12764 0.96609 1.42183 1.46272 1.53393 1.59785 1.61606 1.72295 1.78558 2.27478 2.46403 2.88263 2.97429 3.38687 3.73605 4.03900 4.13375 4.28330 4.42327 4.62299 4.67228 4.73093 4.81289 4.83658 4.93921 4.97389 5.05528 5.06684 5.13432 5.26590 5.28430 5.34108 5.48921 5.50100 5.56572 5.73421 5.83027 6.21185 6.53085 6.92352 7.27211 7.73973 8.58199 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.006875 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.759213 B = 4071.724754 C = 5268.283317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.002 3.998 3 C -0.156 4.156 4 C -0.131 4.131 5 C -0.243 4.243 6 C -0.163 4.163 7 C -0.084 4.084 8 C -0.286 4.286 9 C 0.545 3.455 10 O -0.616 6.616 11 N -0.445 5.445 12 C -0.368 4.368 13 H 0.103 0.897 14 C 0.040 3.960 15 N -0.872 5.872 16 Si 0.950 3.050 17 H -0.240 1.240 18 H -0.273 1.273 19 H -0.261 1.261 20 C 0.207 3.793 21 C 0.226 3.774 22 N -0.489 5.489 23 S 0.298 5.702 24 H 0.047 0.953 25 H 0.079 0.921 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.147 0.853 34 H 0.133 0.867 35 H 0.286 0.714 36 H 0.152 0.848 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.704 4.906 -12.097 15.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.000 4.000 3 C -0.214 4.214 4 C -0.189 4.189 5 C -0.362 4.362 6 C -0.192 4.192 7 C -0.119 4.119 8 C -0.406 4.406 9 C 0.337 3.663 10 O -0.504 6.504 11 N -0.164 5.164 12 C -0.499 4.499 13 H 0.120 0.880 14 C -0.169 4.169 15 N -0.505 5.505 16 Si 0.771 3.229 17 H -0.163 1.163 18 H -0.198 1.198 19 H -0.186 1.186 20 C 0.080 3.920 21 C -0.092 4.092 22 N -0.169 5.169 23 S 0.573 5.427 24 H 0.066 0.934 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.097 0.903 36 H 0.169 0.831 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.771 5.195 -11.807 14.131 hybrid contribution -0.701 -0.968 0.279 1.227 sum -6.472 4.227 -11.528 13.880 Atomic orbital electron populations 1.21856 0.92396 1.02413 1.02337 1.19183 0.96367 0.94388 0.90062 1.22039 1.01371 0.94850 1.03112 1.21847 1.00803 1.00424 0.95849 1.25853 1.05840 1.00188 1.04324 1.19715 1.05558 0.96029 0.97911 1.20713 0.96511 0.99450 0.95183 1.24497 1.12095 1.01592 1.02420 1.17908 0.79244 0.83951 0.85190 1.90641 1.68041 1.30361 1.61394 1.43169 1.35949 1.13511 1.23819 1.19511 1.53632 0.82440 0.94361 0.88042 1.26275 0.92113 1.02483 0.96024 1.69657 1.42272 1.30744 1.07833 0.85590 0.80805 0.76958 0.79529 1.16339 1.19755 1.18564 1.19195 0.82047 1.01124 0.89605 1.30732 0.94796 0.91579 0.92046 1.80991 1.14091 1.12395 1.09468 1.84148 1.40989 1.09238 1.08286 0.93414 0.90182 0.92242 0.92610 0.89362 0.92882 0.92287 0.90181 0.93356 0.83505 0.84924 0.90333 0.83119 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.33 71.98 0.60 -1.92 16 2 C 0.00 0.04 0.90 -52.93 -0.05 -0.01 16 3 C -0.16 -3.32 7.52 71.98 0.54 -2.77 16 4 C -0.13 -2.48 8.33 71.98 0.60 -1.88 16 5 C -0.24 -7.29 4.97 24.69 0.12 -7.16 16 6 C -0.16 -5.08 9.18 21.08 0.19 -4.89 16 7 C -0.08 -3.21 10.02 21.74 0.22 -2.99 16 8 C -0.29 -12.37 6.30 24.07 0.15 -12.22 16 9 C 0.55 26.99 7.54 86.38 0.65 27.64 16 10 O -0.62 -33.14 16.49 -4.47 -0.07 -33.21 16 11 N -0.45 -21.21 2.44 -650.18 -1.59 -22.79 16 12 C -0.37 -16.67 6.72 84.09 0.56 -16.10 16 13 H 0.10 4.48 5.49 -14.83 -0.08 4.40 16 14 C 0.04 1.73 5.34 84.94 0.45 2.19 16 15 N -0.87 -39.36 11.25 21.68 0.24 -39.11 16 16 Si 0.95 33.39 29.56 68.60 2.03 35.42 16 17 H -0.24 -7.78 7.11 99.48 0.71 -7.08 16 18 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 19 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 20 C 0.21 9.11 5.35 84.57 0.45 9.56 16 21 C 0.23 10.17 15.71 89.43 1.41 11.57 16 22 N -0.49 -22.85 18.54 20.01 0.37 -22.48 16 23 S 0.30 10.80 16.68 -56.49 -0.94 9.86 16 24 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.11 7.86 -2.39 -0.02 1.09 16 27 H 0.05 1.25 7.91 -2.39 -0.02 1.23 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.23 7.90 -2.39 -0.02 1.21 16 30 H 0.06 1.09 7.86 -2.38 -0.02 1.07 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.15 3.75 7.90 -2.91 -0.02 3.72 16 34 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 35 H 0.29 12.08 8.31 -92.71 -0.77 11.31 16 36 H 0.15 6.57 5.82 -2.39 -0.01 6.56 16 37 H 0.11 4.58 7.53 -2.39 -0.02 4.56 16 Total: -1.00 -56.65 327.82 6.96 -49.69 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 1.02 Total: 21.61 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.91 Total: 1.02 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -0.97 Total: -84.39 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.07 Total: -33.21 kcal Atomic # 14 Polarization: 33.39 SS G_CDS: 2.03 Total: 35.42 kcal Atomic # 16 Polarization: 10.80 SS G_CDS: -0.94 Total: 9.86 kcal Total: -56.65 6.96 -49.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151300546.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.326 kcal (2) G-P(sol) polarization free energy of solvation -56.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds