Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86797 * 120.00284 * 2 1 4 4 H 1.48502 * 109.47475 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47394 * 300.00238 * 3 2 1 6 6 H 1.48499 * 109.47033 * 60.00101 * 3 2 1 7 7 C 1.40117 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.46137 * 120.00059 * 359.97438 * 7 2 1 10 10 O 1.21753 * 119.99874 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00521 * 180.02562 * 9 7 2 12 12 C 1.39531 * 120.00383 * 184.59422 * 11 9 7 13 13 C 1.39211 * 119.99829 * 324.84386 * 12 11 9 14 14 C 1.38192 * 120.24007 * 180.02562 * 13 12 11 15 15 C 1.38034 * 120.24690 * 359.69945 * 14 13 12 16 16 C 1.39835 * 119.99935 * 0.54979 * 15 14 13 17 17 C 1.43198 * 120.12069 * 179.74941 * 16 15 14 18 18 C 9.42594 * 95.02783 * 193.52549 * 2 1 3 19 19 C 9.50350 * 123.57315 * 201.59804 * 7 1 2 20 20 C 1.39744 * 119.76385 * 85.25705 * 19 18 17 21 21 C 1.38294 * 119.03362 * 179.74890 * 20 19 18 22 22 C 1.38855 * 118.54641 * 0.51721 * 21 20 19 23 23 C 1.38300 * 119.43843 * 359.71986 * 22 21 20 24 24 N 1.31711 * 120.93218 * 0.02815 * 23 22 21 25 25 C 1.38689 * 120.00313 * 144.86360 * 12 11 9 26 26 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99262 * 4.58673 * 11 9 7 28 28 H 1.08002 * 119.88422 * 0.02562 * 13 12 11 29 29 H 1.07998 * 119.87581 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.99755 * 180.30177 * 15 14 13 31 31 H 1.07998 * 120.48600 * 359.97438 * 20 19 18 32 32 H 1.08000 * 120.72719 * 180.23994 * 21 20 19 33 33 H 1.07999 * 120.28293 * 179.70541 * 22 21 20 34 34 H 1.07998 * 119.53285 * 180.02562 * 23 22 21 35 35 H 1.07999 * 120.12531 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2124 6 1 1.8817 2.3964 1.2125 7 6 2.0069 -1.2135 -0.0005 8 1 3.0869 -1.2136 -0.0001 9 6 1.2762 -2.4790 -0.0005 10 8 0.0587 -2.4790 0.0004 11 7 1.9500 -3.6463 -0.0005 12 6 1.2557 -4.8527 -0.0973 13 6 0.0089 -4.9887 0.5069 14 6 -0.6828 -6.1814 0.4146 15 6 -0.1455 -7.2447 -0.2825 16 6 1.1084 -7.1211 -0.8889 17 6 1.6707 -8.2243 -1.6082 18 6 2.1324 -9.1293 -2.1960 19 6 2.6949 -10.2315 -2.9192 20 6 2.6006 -10.2673 -4.3130 21 6 3.1532 -11.3353 -4.9959 22 6 3.7735 -12.3404 -4.2657 23 6 3.8272 -12.2448 -2.8871 24 7 3.2981 -11.2153 -2.2587 25 6 1.8078 -5.9166 -0.7951 26 1 -0.4850 0.8400 0.0004 27 1 2.9177 -3.6476 0.0666 28 1 -0.4193 -4.1590 1.0497 29 1 -1.6494 -6.2805 0.8860 30 1 -0.6918 -8.1735 -0.3561 31 1 2.1065 -9.4706 -4.8493 32 1 3.0995 -11.3888 -6.0732 33 1 4.2103 -13.1896 -4.7701 34 1 4.3096 -13.0254 -2.3177 35 1 2.7749 -5.8134 -1.2647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153530677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = 72.763891 kcal Electronic energy + Delta-G solvation = -20040.247113 eV Core-core repulsion = 16776.296346 eV Total energy + Delta-G solvation = -3263.950767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30432 -39.28535 -37.13695 -34.39866 -33.42789 -32.75967 -32.50330 -31.63217 -29.59435 -28.89510 -26.26397 -24.52360 -23.73546 -22.58557 -22.02668 -20.23847 -18.61068 -17.59932 -17.00098 -16.54029 -16.17059 -15.74293 -15.42909 -14.80855 -14.62928 -14.33183 -14.10132 -13.89367 -13.50702 -13.26874 -12.97112 -12.57014 -12.38028 -12.22810 -11.47727 -11.36783 -11.22414 -11.16392 -10.84776 -10.78066 -10.66162 -10.33809 -10.19271 -9.79441 -9.33974 -8.96434 -8.93880 -8.24479 -7.77029 -7.19705 -6.38898 -4.86273 0.47306 0.95197 1.27181 1.88515 2.70415 3.01949 3.05866 3.12585 3.16916 3.68024 3.80147 3.96430 4.22442 4.40512 4.50748 4.55001 4.58380 4.73072 4.85660 4.91994 5.34452 5.34805 5.48331 5.55357 5.60727 5.75503 5.82735 5.86683 5.98715 6.22422 6.30297 6.45787 6.75379 6.97054 6.99137 7.23258 7.28658 7.45567 7.65402 7.67782 7.99326 8.12037 8.81280 9.16066 10.33127 10.52015 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002486 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.736004 B =11261.867998 C =11922.598647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 C 0.543 3.457 10 O -0.560 6.560 11 N -0.700 5.700 12 C 0.190 3.810 13 C -0.111 4.111 14 C -0.104 4.104 15 C -0.130 4.130 16 C 0.008 3.992 17 C -0.040 4.040 18 C -0.158 4.158 19 C 0.247 3.753 20 C -0.148 4.148 21 C -0.073 4.073 22 C -0.174 4.174 23 C 0.104 3.896 24 N -0.472 5.472 25 C -0.142 4.142 26 H 0.272 0.728 27 H 0.395 0.605 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.160 0.840 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -19.053 -6.728 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.091 0.909 9 C 0.350 3.650 10 O -0.442 6.442 11 N -0.344 5.344 12 C 0.091 3.909 13 C -0.131 4.131 14 C -0.123 4.123 15 C -0.149 4.149 16 C 0.007 3.993 17 C -0.042 4.042 18 C -0.159 4.159 19 C 0.112 3.888 20 C -0.168 4.168 21 C -0.099 4.099 22 C -0.194 4.194 23 C -0.054 4.054 24 N -0.181 5.181 25 C -0.164 4.164 26 H 0.083 0.917 27 H 0.228 0.772 28 H 0.166 0.834 29 H 0.142 0.858 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.178 0.822 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.874 -18.785 -5.834 20.265 hybrid contribution 0.943 0.674 -1.037 1.555 sum 5.816 -18.111 -6.871 20.225 Atomic orbital electron populations 1.69986 1.07165 1.27768 1.33714 1.25750 0.94723 1.00576 0.92490 0.86217 0.80465 0.81179 0.78399 1.18619 1.19981 1.19963 1.20875 0.93886 0.88906 1.53614 0.90881 1.18401 0.87491 0.82049 0.77049 1.90617 1.13685 1.85932 1.54009 1.44136 1.09771 1.04077 1.76369 1.17811 0.93354 0.86434 0.93342 1.21748 0.94860 0.97691 0.98839 1.20937 0.99690 0.92583 0.99066 1.20961 0.94512 0.99230 1.00245 1.15600 0.94759 0.89389 0.99550 1.19257 0.95751 0.93563 0.95678 1.18105 1.01577 0.95324 1.00874 1.16491 0.93927 0.89539 0.88862 1.22163 1.00802 0.99861 0.93944 1.21553 0.94744 0.92799 1.00790 1.22265 1.01170 1.00270 0.95707 1.22777 0.95482 0.95038 0.92142 1.67836 1.08285 1.01147 1.40832 1.20923 1.01400 0.92598 1.01494 0.91731 0.77193 0.83436 0.85834 0.86404 0.84137 0.84267 0.84470 0.82242 0.85972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.65 11.82 55.55 0.66 -20.99 16 2 C 0.09 2.28 5.50 -17.36 -0.10 2.19 16 3 Si 0.91 19.24 29.56 -169.99 -5.02 14.21 16 4 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 5 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.54 -14.40 9.53 -35.71 -0.34 -14.74 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.54 14.73 7.58 -13.09 -0.10 14.63 16 10 O -0.56 -17.00 12.43 5.14 0.06 -16.94 16 11 N -0.70 -15.45 5.31 -11.24 -0.06 -15.51 16 12 C 0.19 3.90 6.29 -83.83 -0.53 3.38 16 13 C -0.11 -2.28 8.69 -39.24 -0.34 -2.62 16 14 C -0.10 -1.77 10.02 -39.67 -0.40 -2.17 16 15 C -0.13 -2.09 9.76 -39.06 -0.38 -2.47 16 16 C 0.01 0.13 5.74 -106.87 -0.61 -0.48 16 17 C -0.04 -0.65 13.24 -38.84 -0.51 -1.16 16 18 C -0.16 -2.43 13.46 -38.79 -0.52 -2.95 16 19 C 0.25 3.29 6.60 -84.84 -0.56 2.73 16 20 C -0.15 -1.50 9.81 -39.00 -0.38 -1.89 16 21 C -0.07 -0.55 10.16 -39.33 -0.40 -0.95 16 22 C -0.17 -1.23 10.11 -39.33 -0.40 -1.63 16 23 C 0.10 0.95 11.17 -17.58 -0.20 0.75 16 24 N -0.47 -6.18 10.29 -11.03 -0.11 -6.29 16 25 C -0.14 -2.56 9.68 -38.91 -0.38 -2.94 16 26 H 0.27 7.00 8.29 -40.82 -0.34 6.67 16 27 H 0.39 7.45 8.80 -40.82 -0.36 7.09 16 28 H 0.15 3.44 6.21 -52.49 -0.33 3.12 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -33.52 325.62 -8.90 -42.43 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.19 Total: 8.50 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -6.14 Total: -10.32 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.48 Total: -42.79 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.06 Total: -16.94 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.52 -8.90 -42.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153530677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.192 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds