Wall clock time and date at job start Tue Mar 31 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86797 * 120.00284 * 2 1 4 4 H 1.48502 * 109.47475 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47394 * 300.00238 * 3 2 1 6 6 H 1.48499 * 109.47033 * 60.00101 * 3 2 1 7 7 C 1.40117 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00506 * 180.02562 * 7 2 1 9 9 C 1.46137 * 120.00059 * 359.97438 * 7 2 1 10 10 O 1.21753 * 119.99874 * 359.97438 * 9 7 2 11 11 N 1.34779 * 120.00521 * 180.02562 * 9 7 2 12 12 C 1.39531 * 120.00383 * 184.59422 * 11 9 7 13 13 C 1.39211 * 119.99829 * 324.84386 * 12 11 9 14 14 C 1.38192 * 120.24007 * 180.02562 * 13 12 11 15 15 C 1.38034 * 120.24690 * 359.69945 * 14 13 12 16 16 C 1.39835 * 119.99935 * 0.54979 * 15 14 13 17 17 C 1.43198 * 120.12069 * 179.74941 * 16 15 14 18 18 C 9.42594 * 95.02783 * 193.52549 * 2 1 3 19 19 C 9.50350 * 123.57315 * 201.59804 * 7 1 2 20 20 C 1.39744 * 119.76385 * 85.25705 * 19 18 17 21 21 C 1.38294 * 119.03362 * 179.74890 * 20 19 18 22 22 C 1.38855 * 118.54641 * 0.51721 * 21 20 19 23 23 C 1.38300 * 119.43843 * 359.71986 * 22 21 20 24 24 N 1.31711 * 120.93218 * 0.02815 * 23 22 21 25 25 C 1.38689 * 120.00313 * 144.86360 * 12 11 9 26 26 H 0.96998 * 120.00212 * 359.97438 * 1 2 3 27 27 H 0.96996 * 119.99262 * 4.58673 * 11 9 7 28 28 H 1.08002 * 119.88422 * 0.02562 * 13 12 11 29 29 H 1.07998 * 119.87581 * 179.97438 * 14 13 12 30 30 H 1.08001 * 119.99755 * 180.30177 * 15 14 13 31 31 H 1.07998 * 120.48600 * 359.97438 * 20 19 18 32 32 H 1.08000 * 120.72719 * 180.23994 * 21 20 19 33 33 H 1.07999 * 120.28293 * 179.70541 * 22 21 20 34 34 H 1.07998 * 119.53285 * 180.02562 * 23 22 21 35 35 H 1.07999 * 120.12531 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3463 0.0006 5 1 1.8817 2.3964 -1.2124 6 1 1.8817 2.3964 1.2125 7 6 2.0069 -1.2135 -0.0005 8 1 3.0869 -1.2136 -0.0001 9 6 1.2762 -2.4790 -0.0005 10 8 0.0587 -2.4790 0.0004 11 7 1.9500 -3.6463 -0.0005 12 6 1.2557 -4.8527 -0.0973 13 6 0.0089 -4.9887 0.5069 14 6 -0.6828 -6.1814 0.4146 15 6 -0.1455 -7.2447 -0.2825 16 6 1.1084 -7.1211 -0.8889 17 6 1.6707 -8.2243 -1.6082 18 6 2.1324 -9.1293 -2.1960 19 6 2.6949 -10.2315 -2.9192 20 6 2.6006 -10.2673 -4.3130 21 6 3.1532 -11.3353 -4.9959 22 6 3.7735 -12.3404 -4.2657 23 6 3.8272 -12.2448 -2.8871 24 7 3.2981 -11.2153 -2.2587 25 6 1.8078 -5.9166 -0.7951 26 1 -0.4850 0.8400 0.0004 27 1 2.9177 -3.6476 0.0666 28 1 -0.4193 -4.1590 1.0497 29 1 -1.6494 -6.2805 0.8860 30 1 -0.6918 -8.1735 -0.3561 31 1 2.1065 -9.4706 -4.8493 32 1 3.0995 -11.3888 -6.0732 33 1 4.2103 -13.1896 -4.7701 34 1 4.3096 -13.0254 -2.3177 35 1 2.7749 -5.8134 -1.2647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153530677.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:53 Heat of formation + Delta-G solvation = 51.910133 kcal Electronic energy + Delta-G solvation = -20041.151400 eV Core-core repulsion = 16776.296346 eV Total energy + Delta-G solvation = -3264.855054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.04815 -40.89552 -38.92015 -35.79919 -34.98450 -34.52204 -33.49633 -32.68878 -30.98749 -30.32382 -28.21661 -25.50697 -24.42168 -23.95138 -23.55592 -21.92750 -19.72364 -19.48689 -18.24581 -17.63666 -17.35646 -17.03470 -16.83876 -16.29481 -15.90241 -15.78373 -15.20109 -15.03318 -14.79326 -14.63300 -14.31302 -14.14628 -13.94748 -13.22578 -12.90765 -12.88196 -12.79505 -12.67148 -12.59878 -12.19659 -12.02904 -11.97605 -11.08256 -10.91435 -10.83489 -10.56029 -9.95164 -9.78176 -9.57131 -8.86212 -8.38079 -6.95959 -0.34865 -0.09382 0.28997 0.42679 1.38904 1.40092 1.57946 1.68121 1.77585 2.20301 2.37136 2.62895 2.85660 2.98151 2.99332 3.54265 3.69247 3.97243 3.98926 4.02786 4.13009 4.18776 4.21586 4.35877 4.54504 4.61180 4.73593 4.80295 5.00873 5.14090 5.20010 5.24970 5.35845 5.45077 5.51164 5.68543 5.74696 5.82523 6.13476 6.25559 6.32418 6.76930 6.89575 7.29893 8.32469 8.55303 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002486 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.736004 B =11261.867998 C =11922.598647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.029 3.971 3 Si 1.001 2.999 4 H -0.247 1.247 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.530 3.470 10 O -0.604 6.604 11 N -0.694 5.694 12 C 0.161 3.839 13 C -0.138 4.138 14 C -0.095 4.095 15 C -0.119 4.119 16 C 0.015 3.985 17 C -0.084 4.084 18 C -0.133 4.133 19 C 0.197 3.803 20 C -0.149 4.149 21 C -0.070 4.070 22 C -0.153 4.153 23 C 0.091 3.909 24 N -0.508 5.508 25 C -0.139 4.139 26 H 0.278 0.722 27 H 0.408 0.592 28 H 0.111 0.889 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.179 0.821 34 H 0.187 0.813 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.696 -21.433 -8.684 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.170 1.170 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.599 4.599 8 H 0.110 0.890 9 C 0.337 3.663 10 O -0.490 6.490 11 N -0.338 5.338 12 C 0.064 3.936 13 C -0.159 4.159 14 C -0.113 4.113 15 C -0.138 4.138 16 C 0.014 3.986 17 C -0.086 4.086 18 C -0.134 4.134 19 C 0.064 3.936 20 C -0.169 4.169 21 C -0.095 4.095 22 C -0.172 4.172 23 C -0.068 4.068 24 N -0.218 5.218 25 C -0.160 4.160 26 H 0.088 0.912 27 H 0.243 0.757 28 H 0.129 0.871 29 H 0.169 0.831 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.194 0.806 33 H 0.196 0.804 34 H 0.204 0.796 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.753 -21.217 -7.788 23.588 hybrid contribution 0.428 1.036 -0.553 1.250 sum 7.181 -20.180 -8.341 22.986 Atomic orbital electron populations 1.70139 1.09507 1.29364 1.35021 1.26999 0.95596 1.04985 0.91130 0.84908 0.79328 0.75096 0.78623 1.16964 1.19295 1.19216 1.21408 0.95015 0.89493 1.54024 0.88953 1.18736 0.87235 0.83646 0.76675 1.90579 1.15472 1.87035 1.55897 1.43695 1.10286 1.03676 1.76178 1.17980 0.93878 0.86561 0.95176 1.21587 0.95766 0.98270 1.00310 1.21165 1.00331 0.91280 0.98540 1.21315 0.94126 0.99866 0.98504 1.15732 0.94878 0.89166 0.98837 1.19101 0.98058 0.94486 0.96982 1.18795 1.00001 0.95121 0.99439 1.16647 0.96817 0.90032 0.90115 1.22341 1.00744 1.01070 0.92729 1.22032 0.93326 0.91585 1.02593 1.22757 0.98819 1.00750 0.94855 1.23362 0.95138 0.94550 0.93722 1.67729 1.09373 1.02250 1.42399 1.20999 1.01924 0.92180 1.00882 0.91172 0.75688 0.87072 0.83058 0.83265 0.83402 0.80619 0.80357 0.79621 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.19 11.82 21.85 0.26 -47.93 16 2 C 0.03 1.59 5.50 85.33 0.47 2.06 16 3 Si 1.00 39.72 29.56 68.60 2.03 41.75 16 4 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 6 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.56 -31.09 9.53 24.78 0.24 -30.86 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 30.28 7.58 86.29 0.65 30.93 16 10 O -0.60 -39.08 12.43 -4.52 -0.06 -39.14 16 11 N -0.69 -32.18 5.31 -307.67 -1.63 -33.82 16 12 C 0.16 6.97 6.29 38.26 0.24 7.21 16 13 C -0.14 -6.04 8.69 22.49 0.20 -5.85 16 14 C -0.09 -3.25 10.02 22.21 0.22 -3.03 16 15 C -0.12 -3.74 9.76 22.61 0.22 -3.52 16 16 C 0.01 0.50 5.74 -21.32 -0.12 0.37 16 17 C -0.08 -2.71 13.24 30.02 0.40 -2.31 16 18 C -0.13 -4.05 13.46 30.05 0.40 -3.65 16 19 C 0.20 5.09 6.60 40.62 0.27 5.35 16 20 C -0.15 -2.72 9.81 22.65 0.22 -2.50 16 21 C -0.07 -0.77 10.16 22.43 0.23 -0.55 16 22 C -0.15 -1.47 10.11 22.43 0.23 -1.24 16 23 C 0.09 1.39 11.17 84.73 0.95 2.34 16 24 N -0.51 -12.67 10.29 -188.82 -1.94 -14.61 16 25 C -0.14 -5.10 9.68 22.71 0.22 -4.88 16 26 H 0.28 14.87 8.29 -92.71 -0.77 14.11 16 27 H 0.41 16.03 8.80 -92.71 -0.82 15.21 16 28 H 0.11 5.67 6.21 -2.91 -0.02 5.66 16 29 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 32 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 33 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 34 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -78.59 325.62 4.01 -74.58 By element: Atomic # 1 Polarization: 28.95 SS G_CDS: 0.33 Total: 29.28 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.03 Total: -10.11 kcal Atomic # 7 Polarization: -93.04 SS G_CDS: -3.32 Total: -96.36 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.06 Total: -39.14 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -78.59 4.01 -74.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153530677.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.490 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds