Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99976 * 2 1 4 4 H 1.48499 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47061 * 300.00512 * 3 2 1 6 6 H 1.48502 * 109.46748 * 60.00524 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46748 * 180.02562 * 11 10 9 13 13 N 1.40280 * 126.57162 * 270.28269 * 12 11 10 14 14 C 1.30156 * 107.74888 * 180.10974 * 13 12 11 15 15 C 1.47885 * 125.46733 * 179.91302 * 14 13 12 16 16 C 1.39546 * 120.11626 * 179.71713 * 15 14 13 17 17 C 1.37925 * 119.88203 * 179.97438 * 16 15 14 18 18 C 1.38582 * 120.11232 * 359.97438 * 17 16 15 19 19 F 1.35103 * 119.87996 * 179.97438 * 18 17 16 20 20 C 1.38574 * 120.23582 * 0.02562 * 18 17 16 21 21 C 1.37915 * 120.11731 * 359.97438 * 20 18 17 22 22 O 1.35095 * 109.07052 * 359.64936 * 14 13 12 23 23 C 1.34320 * 108.86027 * 0.22546 * 22 14 13 24 24 O 1.21694 * 126.26353 * 180.02562 * 23 22 14 25 25 H 0.96998 * 119.99973 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46892 * 60.00097 * 9 7 2 27 27 H 1.09003 * 109.47355 * 300.00098 * 9 7 2 28 28 H 1.09006 * 109.46602 * 59.99782 * 10 9 7 29 29 H 1.09003 * 109.46819 * 300.00249 * 10 9 7 30 30 H 1.08999 * 109.47173 * 59.99888 * 11 10 9 31 31 H 1.08998 * 109.46864 * 299.99594 * 11 10 9 32 32 H 1.08000 * 120.06038 * 359.96017 * 16 15 14 33 33 H 1.07999 * 119.93728 * 179.72197 * 17 16 15 34 34 H 1.08005 * 119.94605 * 179.97438 * 20 18 17 35 35 H 1.08002 * 120.06346 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 7 2.9806 -6.7321 -1.1268 14 6 3.7775 -7.6714 -0.7064 15 6 4.5597 -8.5830 -1.5690 16 6 5.3872 -9.5502 -0.9970 17 6 6.1141 -10.3982 -1.8062 18 6 6.0234 -10.2913 -3.1849 19 9 6.7379 -11.1241 -3.9730 20 6 5.2031 -9.3326 -3.7580 21 6 4.4720 -8.4797 -2.9580 22 8 3.7800 -7.6762 0.6446 23 6 2.9544 -6.7120 1.0838 24 8 2.7203 -6.4393 2.2464 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8535 -5.0451 0.8886 32 1 5.4584 -9.6344 0.0773 33 1 6.7582 -11.1441 -1.3645 34 1 5.1363 -9.2531 -4.8330 35 1 3.8327 -7.7331 -3.4055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153617385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = -34.067192 kcal Electronic energy + Delta-G solvation = -21617.375605 eV Core-core repulsion = 17918.023070 eV Total energy + Delta-G solvation = -3699.352535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.41316 -43.39272 -39.51145 -37.89260 -36.58238 -34.27543 -32.92236 -31.86033 -31.71875 -29.77591 -27.13568 -24.81268 -23.88663 -23.57976 -22.28171 -21.70508 -20.44734 -18.47315 -17.89758 -17.62007 -16.98407 -16.81635 -16.38441 -16.08749 -15.95562 -15.30749 -14.79537 -14.46020 -14.14032 -14.09907 -13.76327 -13.68628 -13.26304 -13.13379 -12.65426 -12.34412 -12.13250 -11.68355 -11.65640 -11.55015 -10.98514 -10.89986 -10.77754 -10.59854 -9.87799 -9.83363 -9.71398 -9.48974 -9.18721 -8.51163 -8.40831 -6.05706 -4.08246 0.05436 0.67726 1.65277 1.68749 2.26545 2.35183 3.08607 3.28929 3.36515 3.40964 3.67414 3.88866 4.25290 4.30641 4.42455 4.55259 4.66344 4.79769 5.14483 5.30650 5.32392 5.36667 5.49887 5.54615 5.57487 5.62868 5.79004 5.80860 5.92144 6.22329 6.43084 6.65660 6.89995 7.35735 7.56284 7.57711 7.67875 7.92300 8.33993 8.97646 9.56266 11.05672 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002791 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.366716 B =10030.295023 C =10730.340552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.128 4.128 11 C 0.149 3.851 12 N -0.440 5.440 13 N -0.243 5.243 14 C 0.267 3.733 15 C -0.035 4.035 16 C -0.048 4.048 17 C -0.155 4.155 18 C 0.123 3.877 19 F -0.134 7.134 20 C -0.154 4.154 21 C -0.038 4.038 22 O -0.272 6.272 23 C 0.602 3.398 24 O -0.479 6.479 25 H 0.261 0.739 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.143 -22.830 -7.115 25.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.166 4.166 11 C 0.031 3.969 12 N -0.271 5.271 13 N -0.072 5.072 14 C 0.044 3.956 15 C -0.038 4.038 16 C -0.069 4.069 17 C -0.174 4.174 18 C 0.103 3.897 19 F -0.112 7.112 20 C -0.172 4.172 21 C -0.057 4.057 22 O -0.169 6.169 23 C 0.354 3.646 24 O -0.360 6.360 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.518 -22.167 -6.989 25.116 hybrid contribution 0.782 0.609 0.540 1.128 sum 10.300 -21.559 -6.449 24.748 Atomic orbital electron populations 1.69965 1.06038 1.26661 1.50707 1.25014 0.94878 0.99327 0.95175 0.86509 0.80111 0.83621 0.77629 1.19735 1.20947 1.20930 1.21200 0.93088 0.90771 1.50817 0.92597 1.19051 0.93727 0.90749 0.97703 1.22131 1.00136 0.92739 1.01615 1.22189 0.88489 0.81561 1.04623 1.50510 1.42434 1.33067 1.01097 1.77400 1.10966 1.07100 1.11781 1.23560 0.97064 0.95859 0.79143 1.17288 0.99278 0.96133 0.91079 1.21142 0.92658 0.91900 1.01151 1.21086 1.02674 1.02157 0.91476 1.17957 0.92856 0.90277 0.88657 1.91540 1.75926 1.69661 1.74081 1.21110 0.98305 0.96144 1.01689 1.21090 0.96550 0.97366 0.90744 1.85119 1.58749 1.51445 1.21623 1.19327 0.79375 0.79030 0.86877 1.91226 1.63548 1.66609 1.14633 0.92941 0.96051 0.96082 0.92574 0.92295 0.88315 0.88208 0.83533 0.83619 0.83429 0.83007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.03 0.63 4.97 -27.88 -0.14 0.50 16 10 C -0.13 -2.60 5.48 -26.73 -0.15 -2.75 16 11 C 0.15 2.50 6.41 -4.04 -0.03 2.48 16 12 N -0.44 -7.18 3.64 -65.27 -0.24 -7.42 16 13 N -0.24 -3.45 12.16 31.96 0.39 -3.06 16 14 C 0.27 3.29 7.94 -14.31 -0.11 3.18 16 15 C -0.04 -0.32 5.87 -104.97 -0.62 -0.93 16 16 C -0.05 -0.35 9.71 -39.21 -0.38 -0.73 16 17 C -0.16 -0.96 10.01 -39.57 -0.40 -1.35 16 18 C 0.12 0.85 7.30 -39.33 -0.29 0.56 16 19 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 20 C -0.15 -0.98 10.01 -39.58 -0.40 -1.38 16 21 C -0.04 -0.28 9.68 -39.21 -0.38 -0.66 16 22 O -0.27 -3.89 10.43 -20.76 -0.22 -4.11 16 23 C 0.60 10.35 9.24 54.15 0.50 10.85 16 24 O -0.48 -9.60 17.91 -19.01 -0.34 -9.94 16 25 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.10 1.65 8.12 -51.93 -0.42 1.23 16 32 H 0.15 0.90 7.89 -52.49 -0.41 0.48 16 33 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.15 1.06 7.82 -52.49 -0.41 0.65 16 LS Contribution 323.43 15.07 4.87 4.87 Total: -1.00 -32.26 323.43 -6.32 -38.57 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -3.75 Total: -5.09 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.79 Total: -3.64 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.89 Total: -36.27 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.56 Total: -14.05 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.26 -6.32 -38.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153617385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.508 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds