Wall clock time and date at job start Tue Mar 31 2020 06:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86805 * 119.99976 * 2 1 4 4 H 1.48499 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47061 * 300.00512 * 3 2 1 6 6 H 1.48502 * 109.46748 * 60.00524 * 3 2 1 7 7 C 1.37875 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47365 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47135 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46748 * 180.02562 * 11 10 9 13 13 N 1.40280 * 126.57162 * 270.28269 * 12 11 10 14 14 C 1.30156 * 107.74888 * 180.10974 * 13 12 11 15 15 C 1.47885 * 125.46733 * 179.91302 * 14 13 12 16 16 C 1.39546 * 120.11626 * 179.71713 * 15 14 13 17 17 C 1.37925 * 119.88203 * 179.97438 * 16 15 14 18 18 C 1.38582 * 120.11232 * 359.97438 * 17 16 15 19 19 F 1.35103 * 119.87996 * 179.97438 * 18 17 16 20 20 C 1.38574 * 120.23582 * 0.02562 * 18 17 16 21 21 C 1.37915 * 120.11731 * 359.97438 * 20 18 17 22 22 O 1.35095 * 109.07052 * 359.64936 * 14 13 12 23 23 C 1.34320 * 108.86027 * 0.22546 * 22 14 13 24 24 O 1.21694 * 126.26353 * 180.02562 * 23 22 14 25 25 H 0.96998 * 119.99973 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46892 * 60.00097 * 9 7 2 27 27 H 1.09003 * 109.47355 * 300.00098 * 9 7 2 28 28 H 1.09006 * 109.46602 * 59.99782 * 10 9 7 29 29 H 1.09003 * 109.46819 * 300.00249 * 10 9 7 30 30 H 1.08999 * 109.47173 * 59.99888 * 11 10 9 31 31 H 1.08998 * 109.46864 * 299.99594 * 11 10 9 32 32 H 1.08000 * 120.06038 * 359.96017 * 16 15 14 33 33 H 1.07999 * 119.93728 * 179.72197 * 17 16 15 34 34 H 1.08005 * 119.94605 * 179.97438 * 20 18 17 35 35 H 1.08002 * 120.06346 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 7 2.9806 -6.7321 -1.1268 14 6 3.7775 -7.6714 -0.7064 15 6 4.5597 -8.5830 -1.5690 16 6 5.3872 -9.5502 -0.9970 17 6 6.1141 -10.3982 -1.8062 18 6 6.0234 -10.2913 -3.1849 19 9 6.7379 -11.1241 -3.9730 20 6 5.2031 -9.3326 -3.7580 21 6 4.4720 -8.4797 -2.9580 22 8 3.7800 -7.6762 0.6446 23 6 2.9544 -6.7120 1.0838 24 8 2.7203 -6.4393 2.2464 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8905 30 1 0.8540 -5.0446 -0.8914 31 1 0.8535 -5.0451 0.8886 32 1 5.4584 -9.6344 0.0773 33 1 6.7582 -11.1441 -1.3645 34 1 5.1363 -9.2531 -4.8330 35 1 3.8327 -7.7331 -3.4055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153617385.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:29 Heat of formation + Delta-G solvation = -54.165184 kcal Electronic energy + Delta-G solvation = -21618.247119 eV Core-core repulsion = 17918.023070 eV Total energy + Delta-G solvation = -3700.224050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.99122 -44.58760 -40.17475 -39.19635 -37.91734 -35.99427 -34.38078 -33.21092 -32.31235 -30.97581 -28.74832 -26.19290 -25.11602 -24.41228 -23.37658 -22.77965 -22.12742 -19.39734 -18.88482 -18.70602 -18.37043 -17.99968 -17.73392 -16.97714 -16.70958 -16.65512 -16.34003 -15.73399 -15.35756 -15.00680 -14.67254 -14.64068 -14.32952 -14.26904 -13.82194 -13.54290 -13.37804 -13.29947 -13.20644 -12.76946 -12.63937 -12.40392 -12.23866 -12.06791 -11.67693 -11.59122 -11.31309 -10.59796 -10.57684 -10.23363 -9.51212 -8.22688 -6.33120 -0.67442 0.16013 0.39343 0.79562 0.93819 1.31265 1.39054 1.39937 1.52674 2.39695 2.48784 2.85348 3.11142 3.12025 3.48400 3.68557 3.79922 4.04798 4.05514 4.07250 4.13745 4.28722 4.35489 4.51382 4.74613 4.77444 4.89400 5.00494 5.00912 5.05476 5.08625 5.20003 5.45849 5.64770 5.68787 5.79643 6.11820 6.20583 6.31836 6.81696 7.35854 8.89086 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.002791 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.366716 B =10030.295023 C =10730.340552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.110 4.110 11 C 0.159 3.841 12 N -0.445 5.445 13 N -0.263 5.263 14 C 0.289 3.711 15 C -0.059 4.059 16 C -0.043 4.043 17 C -0.149 4.149 18 C 0.122 3.878 19 F -0.137 7.137 20 C -0.150 4.150 21 C -0.034 4.034 22 O -0.266 6.266 23 C 0.600 3.400 24 O -0.516 6.516 25 H 0.265 0.735 26 H 0.010 0.990 27 H 0.000 1.000 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.100 0.900 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.729 -23.896 -8.328 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.008 4.008 10 C -0.149 4.149 11 C 0.041 3.959 12 N -0.275 5.275 13 N -0.092 5.092 14 C 0.067 3.933 15 C -0.061 4.061 16 C -0.063 4.063 17 C -0.168 4.168 18 C 0.102 3.898 19 F -0.115 7.115 20 C -0.168 4.168 21 C -0.054 4.054 22 O -0.163 6.163 23 C 0.352 3.648 24 O -0.400 6.400 25 H 0.074 0.926 26 H 0.029 0.971 27 H 0.019 0.981 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.175 0.825 33 H 0.187 0.813 34 H 0.186 0.814 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.120 -23.257 -8.234 27.062 hybrid contribution 0.395 0.771 0.814 1.188 sum 11.516 -22.487 -7.420 26.331 Atomic orbital electron populations 1.70073 1.07554 1.27833 1.51414 1.25906 0.95798 1.03132 0.94648 0.85432 0.78935 0.78966 0.77926 1.19011 1.20007 1.20399 1.21627 0.93354 0.92402 1.50897 0.92741 1.18909 0.94055 0.91795 0.96052 1.21816 0.98992 0.93201 1.00849 1.21922 0.88106 0.80178 1.05706 1.50337 1.42507 1.32965 1.01678 1.77459 1.12740 1.08484 1.10506 1.24342 0.95598 0.94993 0.78389 1.17434 1.00571 0.96897 0.91230 1.21275 0.91937 0.91223 1.01869 1.21304 1.02293 1.02061 0.91112 1.18158 0.92539 0.90057 0.89026 1.91542 1.75978 1.69752 1.74231 1.21297 0.97483 0.95367 1.02679 1.21159 0.96552 0.97542 0.90158 1.85113 1.57907 1.50439 1.22803 1.19356 0.79517 0.79367 0.86599 1.91188 1.64913 1.67890 1.16003 0.92609 0.97142 0.98140 0.94026 0.92205 0.86372 0.88137 0.82546 0.81289 0.81383 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.11 -4.56 5.48 30.60 0.17 -4.39 16 11 C 0.16 5.37 6.41 86.38 0.55 5.93 16 12 N -0.44 -14.47 3.64 -590.68 -2.15 -16.62 16 13 N -0.26 -7.27 12.16 -167.02 -2.03 -9.30 16 14 C 0.29 6.81 7.94 87.50 0.69 7.51 16 15 C -0.06 -0.95 5.87 -20.09 -0.12 -1.07 16 16 C -0.04 -0.51 9.71 22.51 0.22 -0.29 16 17 C -0.15 -1.39 10.01 22.28 0.22 -1.17 16 18 C 0.12 1.35 7.30 22.43 0.16 1.52 16 19 F -0.14 -1.74 17.26 44.97 0.78 -0.96 16 20 C -0.15 -1.51 10.01 22.27 0.22 -1.29 16 21 C -0.03 -0.45 9.68 22.51 0.22 -0.23 16 22 O -0.27 -7.43 10.43 12.52 0.13 -7.30 16 23 C 0.60 20.70 9.24 129.76 1.20 21.90 16 24 O -0.52 -21.11 17.91 18.81 0.34 -20.77 16 25 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 31 H 0.10 3.38 8.12 -2.39 -0.02 3.37 16 32 H 0.16 1.54 7.89 -2.91 -0.02 1.52 16 33 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.16 1.91 7.82 -2.91 -0.02 1.88 16 Total: -1.00 -69.52 323.43 4.88 -64.64 By element: Atomic # 1 Polarization: -1.70 SS G_CDS: 1.12 Total: -0.58 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 4.39 Total: -0.05 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -3.89 Total: -81.31 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: 0.47 Total: -28.07 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.78 Total: -0.96 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -69.52 4.88 -64.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153617385.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.476 kcal (2) G-P(sol) polarization free energy of solvation -69.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds