Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86803 * 119.99380 * 2 1 4 4 H 1.48499 * 109.47090 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47490 * 30.00054 * 3 2 1 6 6 H 1.48498 * 109.46688 * 150.00118 * 3 2 1 7 7 C 1.40142 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.41640 * 120.00002 * 359.97438 * 7 2 1 10 10 O 1.21800 * 119.99775 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99860 * 180.02562 * 9 7 2 12 12 C 1.39400 * 119.99815 * 174.91705 * 11 9 7 13 13 C 1.39201 * 120.00770 * 326.25677 * 12 11 9 14 14 C 1.37872 * 119.98742 * 179.74826 * 13 12 11 15 15 C 1.39116 * 120.01264 * 0.54877 * 14 13 12 16 16 N 1.39548 * 119.99491 * 179.71949 * 15 14 13 17 17 C 1.46469 * 110.99998 * 10.78952 * 16 15 14 18 18 C 1.53245 * 109.86042 * 162.23012 * 17 16 15 19 19 S 1.81890 * 108.50551 * 62.00472 * 18 17 16 20 20 C 1.81901 * 101.91617 * 308.69303 * 19 18 17 21 21 C 1.46462 * 111.00152 * 244.80540 * 16 15 14 22 22 C 1.39124 * 120.01608 * 359.70880 * 15 14 13 23 23 C 1.37880 * 120.00499 * 0.02562 * 22 15 14 24 24 H 0.97001 * 120.00164 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99955 * 354.63466 * 11 9 7 26 26 H 1.07999 * 120.00211 * 0.02861 * 13 12 11 27 27 H 1.07998 * 119.99312 * 180.27533 * 14 13 12 28 28 H 1.09000 * 109.40163 * 282.35485 * 17 16 15 29 29 H 1.09002 * 109.40382 * 42.11123 * 17 16 15 30 30 H 1.09000 * 109.63262 * 302.29340 * 18 17 16 31 31 H 1.09005 * 109.79112 * 181.80429 * 18 17 16 32 32 H 1.08997 * 109.62854 * 291.60091 * 20 19 18 33 33 H 1.08998 * 109.79842 * 171.10677 * 20 19 18 34 34 H 1.08997 * 109.41242 * 317.88362 * 21 16 15 35 35 H 1.08997 * 109.40655 * 77.65321 * 21 16 15 36 36 H 1.07996 * 119.99452 * 180.02562 * 22 15 14 37 37 H 1.07998 * 119.99914 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.4876 2.0465 -1.4001 5 1 1.4376 2.6527 0.7000 6 1 3.5377 1.4403 0.7000 7 6 2.0071 -1.2136 -0.0005 8 1 3.0871 -1.2136 -0.0001 9 6 1.2990 -2.4403 -0.0005 10 8 0.0810 -2.4403 -0.0005 11 7 1.9729 -3.6075 -0.0005 12 6 1.2801 -4.8124 0.1064 13 6 0.1191 -4.8823 0.8712 14 6 -0.5687 -6.0729 0.9725 15 6 -0.0963 -7.2071 0.3198 16 7 -0.7895 -8.4134 0.4274 17 6 -2.1005 -8.2119 1.0487 18 6 -3.0030 -9.4168 0.7626 19 16 -2.2462 -10.8944 1.5059 20 6 -0.5511 -10.8182 0.8506 21 6 0.0139 -9.4202 1.1246 22 6 1.0670 -7.1389 -0.4402 23 6 1.7523 -5.9472 -0.5465 24 1 -0.4850 0.8400 -0.0004 25 1 2.9397 -3.6092 -0.0791 26 1 -0.2453 -4.0029 1.3814 27 1 -1.4719 -6.1262 1.5622 28 1 -1.9772 -8.0992 2.1259 29 1 -2.5595 -7.3108 0.6417 30 1 -3.0975 -9.5561 -0.3143 31 1 -3.9885 -9.2516 1.1983 32 1 -0.5651 -11.0035 -0.2234 33 1 0.0692 -11.5669 1.3433 34 1 1.0437 -9.3702 0.7710 35 1 -0.0098 -9.2237 2.1964 36 1 1.4331 -8.0195 -0.9470 37 1 2.6551 -5.8943 -1.1368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153882590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = 2.819364 kcal Electronic energy + Delta-G solvation = -20498.766419 eV Core-core repulsion = 17367.226581 eV Total energy + Delta-G solvation = -3131.539838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.95586 -38.31559 -36.28806 -33.38958 -32.44247 -32.02668 -30.53509 -30.28609 -27.59629 -25.87084 -24.19832 -22.52606 -21.85379 -20.76089 -19.67223 -17.59468 -17.53272 -16.56589 -16.02326 -15.67815 -15.43003 -14.66310 -14.30468 -14.15510 -13.97157 -13.89906 -13.37304 -13.16474 -12.99934 -12.82220 -12.57101 -12.26595 -11.95245 -11.73925 -11.67512 -11.29109 -11.15753 -11.05286 -10.67660 -10.62759 -10.36631 -9.91971 -9.57339 -9.02412 -8.51928 -8.46359 -7.88913 -7.74783 -6.78676 -6.40533 -4.93578 1.58441 1.86747 1.97790 2.31646 3.02730 3.10295 3.13607 3.63919 3.95241 4.18478 4.48644 4.62374 4.66878 4.70252 4.94689 4.99593 5.06447 5.15509 5.34210 5.40812 5.48241 5.56067 5.62737 5.68364 5.72981 5.88676 6.00462 6.11909 6.53361 6.55900 6.65453 7.08335 7.14128 7.19828 7.21653 7.54035 7.85435 8.01502 8.20440 8.77169 9.26824 10.35365 10.56228 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045264 B = 0.003010 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.439501 B = 9298.830877 C = 9764.279254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.747 5.747 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.539 4.539 8 H 0.070 0.930 9 C 0.543 3.457 10 O -0.568 6.568 11 N -0.702 5.702 12 C 0.183 3.817 13 C -0.108 4.108 14 C -0.141 4.141 15 C 0.050 3.950 16 N -0.498 5.498 17 C 0.051 3.949 18 C -0.073 4.073 19 S -0.280 6.280 20 C -0.074 4.074 21 C 0.058 3.942 22 C -0.105 4.105 23 C -0.161 4.161 24 H 0.273 0.727 25 H 0.391 0.609 26 H 0.139 0.861 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.116 0.884 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 -16.314 2.005 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.352 3.648 10 O -0.451 6.451 11 N -0.345 5.345 12 C 0.083 3.917 13 C -0.129 4.129 14 C -0.162 4.162 15 C -0.046 4.046 16 N -0.216 5.216 17 C -0.078 4.078 18 C -0.221 4.221 19 S -0.055 6.055 20 C -0.223 4.223 21 C -0.069 4.069 22 C -0.125 4.125 23 C -0.183 4.183 24 H 0.084 0.916 25 H 0.224 0.776 26 H 0.156 0.844 27 H 0.136 0.864 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.300 -17.078 2.257 17.275 hybrid contribution 1.520 1.936 -0.288 2.478 sum 0.220 -15.142 1.968 15.271 Atomic orbital electron populations 1.70009 1.07289 1.27892 1.32271 1.25768 0.94651 1.00705 0.92405 0.86283 0.80197 0.80769 0.79077 1.19495 1.20220 1.18689 1.20035 0.94365 0.90085 1.52915 0.91201 1.17023 0.87615 0.82098 0.78018 1.90664 1.13548 1.86047 1.54848 1.44165 1.09486 1.04488 1.76411 1.18002 0.93694 0.86601 0.93355 1.21236 0.95647 0.97648 0.98386 1.21203 1.01039 0.93197 1.00777 1.18506 0.95968 0.88942 1.01194 1.58408 1.03276 1.08226 1.51670 1.22364 0.89043 0.97980 0.98389 1.23547 1.00804 0.93607 1.04169 1.86864 1.13173 1.37712 1.67710 1.23538 0.94369 0.99794 1.04610 1.22362 0.97468 0.89604 0.97499 1.20347 0.95144 0.97450 0.99593 1.20765 1.02379 0.92844 1.02301 0.91634 0.77583 0.84369 0.86428 0.92618 0.88601 0.88938 0.87320 0.88986 0.87448 0.89142 0.92878 0.86559 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.33 11.73 55.56 0.65 -20.68 16 2 C 0.09 2.33 5.50 -17.35 -0.10 2.23 16 3 Si 0.91 19.12 29.56 -169.99 -5.02 14.09 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.54 -14.49 9.31 -37.57 -0.35 -14.84 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.54 14.88 7.30 -14.96 -0.11 14.77 16 10 O -0.57 -17.51 12.56 5.10 0.06 -17.45 16 11 N -0.70 -15.60 5.31 -12.42 -0.07 -15.67 16 12 C 0.18 3.77 6.27 -83.71 -0.53 3.25 16 13 C -0.11 -2.26 8.64 -39.36 -0.34 -2.60 16 14 C -0.14 -2.45 8.75 -39.39 -0.34 -2.79 16 15 C 0.05 0.78 5.43 -83.69 -0.45 0.32 16 16 N -0.50 -6.41 4.41 -171.41 -0.76 -7.17 16 17 C 0.05 0.60 4.09 -3.93 -0.02 0.58 16 18 C -0.07 -0.74 6.69 37.28 0.25 -0.49 16 19 S -0.28 -3.02 22.39 -107.50 -2.41 -5.43 16 20 C -0.07 -0.70 6.69 37.29 0.25 -0.45 16 21 C 0.06 0.63 5.31 -3.93 -0.02 0.61 16 22 C -0.10 -1.60 9.05 -39.38 -0.36 -1.96 16 23 C -0.16 -2.73 9.96 -39.36 -0.39 -3.12 16 24 H 0.27 7.02 8.29 -40.82 -0.34 6.69 16 25 H 0.39 7.41 8.77 -40.82 -0.36 7.05 16 26 H 0.14 3.33 6.43 -52.49 -0.34 3.00 16 27 H 0.12 1.82 5.96 -52.49 -0.31 1.51 16 28 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16 29 H 0.10 1.18 6.70 -51.93 -0.35 0.83 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.92 6.97 -51.93 -0.36 0.56 16 35 H 0.05 0.60 7.91 -51.93 -0.41 0.19 16 36 H 0.12 1.50 7.76 -52.49 -0.41 1.09 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 315.22 15.07 4.75 4.75 Total: -1.00 -31.86 315.22 -9.89 -41.75 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -4.60 Total: 10.28 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -2.51 Total: -4.48 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -0.17 Total: -43.52 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.06 Total: -17.45 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.41 Total: -5.43 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.86 -9.89 -41.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153882590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.567 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds