Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86803 * 119.99380 * 2 1 4 4 H 1.48499 * 109.47090 * 269.99867 * 3 2 1 5 5 H 1.48496 * 109.47490 * 30.00054 * 3 2 1 6 6 H 1.48498 * 109.46688 * 150.00118 * 3 2 1 7 7 C 1.40142 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.41640 * 120.00002 * 359.97438 * 7 2 1 10 10 O 1.21800 * 119.99775 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99860 * 180.02562 * 9 7 2 12 12 C 1.39400 * 119.99815 * 174.91705 * 11 9 7 13 13 C 1.39201 * 120.00770 * 326.25677 * 12 11 9 14 14 C 1.37872 * 119.98742 * 179.74826 * 13 12 11 15 15 C 1.39116 * 120.01264 * 0.54877 * 14 13 12 16 16 N 1.39548 * 119.99491 * 179.71949 * 15 14 13 17 17 C 1.46469 * 110.99998 * 10.78952 * 16 15 14 18 18 C 1.53245 * 109.86042 * 162.23012 * 17 16 15 19 19 S 1.81890 * 108.50551 * 62.00472 * 18 17 16 20 20 C 1.81901 * 101.91617 * 308.69303 * 19 18 17 21 21 C 1.46462 * 111.00152 * 244.80540 * 16 15 14 22 22 C 1.39124 * 120.01608 * 359.70880 * 15 14 13 23 23 C 1.37880 * 120.00499 * 0.02562 * 22 15 14 24 24 H 0.97001 * 120.00164 * 0.02562 * 1 2 3 25 25 H 0.96996 * 119.99955 * 354.63466 * 11 9 7 26 26 H 1.07999 * 120.00211 * 0.02861 * 13 12 11 27 27 H 1.07998 * 119.99312 * 180.27533 * 14 13 12 28 28 H 1.09000 * 109.40163 * 282.35485 * 17 16 15 29 29 H 1.09002 * 109.40382 * 42.11123 * 17 16 15 30 30 H 1.09000 * 109.63262 * 302.29340 * 18 17 16 31 31 H 1.09005 * 109.79112 * 181.80429 * 18 17 16 32 32 H 1.08997 * 109.62854 * 291.60091 * 20 19 18 33 33 H 1.08998 * 109.79842 * 171.10677 * 20 19 18 34 34 H 1.08997 * 109.41242 * 317.88362 * 21 16 15 35 35 H 1.08997 * 109.40655 * 77.65321 * 21 16 15 36 36 H 1.07996 * 119.99452 * 180.02562 * 22 15 14 37 37 H 1.07998 * 119.99914 * 180.02562 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6179 0.0000 4 1 2.4876 2.0465 -1.4001 5 1 1.4376 2.6527 0.7000 6 1 3.5377 1.4403 0.7000 7 6 2.0071 -1.2136 -0.0005 8 1 3.0871 -1.2136 -0.0001 9 6 1.2990 -2.4403 -0.0005 10 8 0.0810 -2.4403 -0.0005 11 7 1.9729 -3.6075 -0.0005 12 6 1.2801 -4.8124 0.1064 13 6 0.1191 -4.8823 0.8712 14 6 -0.5687 -6.0729 0.9725 15 6 -0.0963 -7.2071 0.3198 16 7 -0.7895 -8.4134 0.4274 17 6 -2.1005 -8.2119 1.0487 18 6 -3.0030 -9.4168 0.7626 19 16 -2.2462 -10.8944 1.5059 20 6 -0.5511 -10.8182 0.8506 21 6 0.0139 -9.4202 1.1246 22 6 1.0670 -7.1389 -0.4402 23 6 1.7523 -5.9472 -0.5465 24 1 -0.4850 0.8400 -0.0004 25 1 2.9397 -3.6092 -0.0791 26 1 -0.2453 -4.0029 1.3814 27 1 -1.4719 -6.1262 1.5622 28 1 -1.9772 -8.0992 2.1259 29 1 -2.5595 -7.3108 0.6417 30 1 -3.0975 -9.5561 -0.3143 31 1 -3.9885 -9.2516 1.1983 32 1 -0.5651 -11.0035 -0.2234 33 1 0.0692 -11.5669 1.3433 34 1 1.0437 -9.3702 0.7710 35 1 -0.0098 -9.2237 2.1964 36 1 1.4331 -8.0195 -0.9470 37 1 2.6551 -5.8943 -1.1368 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153882590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = -18.258349 kcal Electronic energy + Delta-G solvation = -20499.680417 eV Core-core repulsion = 17367.226581 eV Total energy + Delta-G solvation = -3132.453837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28149 -39.93546 -37.82489 -35.14151 -34.41521 -32.97085 -31.76607 -31.60786 -29.30156 -27.46368 -25.22660 -23.80113 -23.20382 -22.13168 -21.24778 -19.41963 -18.69618 -17.82580 -17.63931 -17.23039 -16.62708 -15.98208 -15.71452 -15.47611 -15.17402 -14.91720 -14.65570 -14.57606 -14.34124 -14.22040 -13.94810 -13.51951 -13.30801 -13.16265 -12.92241 -12.79248 -12.71502 -12.62694 -12.19598 -12.03437 -11.75384 -11.11910 -10.87989 -10.74090 -10.01518 -9.92571 -9.72094 -8.73661 -8.39429 -8.30659 -7.02215 0.45745 0.55117 0.79763 1.38799 1.39402 1.52361 1.55812 2.20213 2.34773 2.59378 2.89488 3.06836 3.65580 3.75821 3.79660 3.96191 4.05588 4.13100 4.18831 4.29868 4.36547 4.50696 4.56102 4.67578 4.68155 4.76946 4.80420 4.91436 5.11988 5.19616 5.22353 5.37694 5.58320 5.72940 5.88887 6.00897 6.18488 6.21721 6.52183 6.72916 7.42039 8.38704 8.56915 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.045264 B = 0.003010 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.439501 B = 9298.830877 C = 9764.279254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.031 3.969 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.566 4.566 8 H 0.091 0.909 9 C 0.529 3.471 10 O -0.616 6.616 11 N -0.697 5.697 12 C 0.143 3.857 13 C -0.134 4.134 14 C -0.147 4.147 15 C 0.069 3.931 16 N -0.498 5.498 17 C 0.049 3.951 18 C -0.064 4.064 19 S -0.304 6.304 20 C -0.064 4.064 21 C 0.057 3.943 22 C -0.098 4.098 23 C -0.145 4.145 24 H 0.279 0.721 25 H 0.405 0.595 26 H 0.091 0.909 27 H 0.128 0.872 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.155 0.845 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -18.134 1.330 18.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.601 4.601 8 H 0.109 0.891 9 C 0.339 3.661 10 O -0.503 6.503 11 N -0.341 5.341 12 C 0.045 3.955 13 C -0.156 4.156 14 C -0.168 4.168 15 C -0.028 4.028 16 N -0.215 5.215 17 C -0.080 4.080 18 C -0.212 4.212 19 S -0.079 6.079 20 C -0.212 4.212 21 C -0.070 4.070 22 C -0.118 4.118 23 C -0.167 4.167 24 H 0.089 0.911 25 H 0.241 0.759 26 H 0.110 0.890 27 H 0.146 0.854 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.141 0.859 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.172 0.828 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.443 -18.979 1.588 19.051 hybrid contribution 0.921 2.261 -0.063 2.443 sum 1.364 -16.718 1.526 16.843 Atomic orbital electron populations 1.70171 1.09718 1.29451 1.33666 1.27045 0.95499 1.05216 0.90963 0.84957 0.78801 0.74612 0.79590 1.18425 1.19664 1.17075 1.20577 0.95551 0.90692 1.53295 0.89129 1.17377 0.87290 0.83861 0.77606 1.90621 1.15556 1.87234 1.56913 1.43669 1.10029 1.04064 1.76358 1.18260 0.94437 0.87165 0.95616 1.20992 0.97201 0.97472 0.99929 1.21277 1.01337 0.92809 1.01360 1.18687 0.95554 0.89268 0.99254 1.58473 1.03659 1.07136 1.52229 1.22393 0.88831 0.98575 0.98173 1.23497 1.01021 0.92383 1.04307 1.87010 1.14754 1.37943 1.68160 1.23568 0.93266 0.99237 1.05138 1.22453 0.97917 0.89562 0.97042 1.20739 0.94350 0.97985 0.98736 1.21023 1.02905 0.91769 1.00968 0.91128 0.75948 0.89032 0.85404 0.92739 0.89556 0.88785 0.85881 0.88387 0.85203 0.87712 0.93316 0.82784 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -47.78 11.73 21.85 0.26 -47.52 16 2 C 0.03 1.67 5.50 85.33 0.47 2.14 16 3 Si 1.00 39.39 29.56 68.60 2.03 41.42 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 7 C -0.57 -31.24 9.31 23.57 0.22 -31.02 16 8 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 9 C 0.53 30.43 7.30 85.08 0.62 31.05 16 10 O -0.62 -40.58 12.56 -4.67 -0.06 -40.64 16 11 N -0.70 -31.99 5.31 -311.36 -1.65 -33.64 16 12 C 0.14 6.04 6.27 38.40 0.24 6.28 16 13 C -0.13 -5.98 8.64 22.41 0.19 -5.78 16 14 C -0.15 -5.20 8.75 22.39 0.20 -5.00 16 15 C 0.07 2.03 5.43 38.34 0.21 2.24 16 16 N -0.50 -11.59 4.41 -696.22 -3.07 -14.66 16 17 C 0.05 1.08 4.09 86.47 0.35 1.44 16 18 C -0.06 -1.17 6.69 72.06 0.48 -0.68 16 19 S -0.30 -5.86 22.39 -56.49 -1.27 -7.12 16 20 C -0.06 -0.97 6.69 72.07 0.48 -0.49 16 21 C 0.06 1.05 5.31 86.47 0.46 1.51 16 22 C -0.10 -2.69 9.05 22.40 0.20 -2.48 16 23 C -0.15 -4.66 9.96 22.41 0.22 -4.44 16 24 H 0.28 14.95 8.29 -92.71 -0.77 14.18 16 25 H 0.41 15.53 8.77 -92.71 -0.81 14.71 16 26 H 0.09 4.90 6.43 -2.91 -0.02 4.88 16 27 H 0.13 4.11 5.96 -2.91 -0.02 4.09 16 28 H 0.05 1.23 7.69 -2.39 -0.02 1.21 16 29 H 0.09 2.08 6.70 -2.39 -0.02 2.07 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 32 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.66 6.97 -2.39 -0.02 1.65 16 35 H 0.05 0.97 7.91 -2.39 -0.02 0.95 16 36 H 0.15 3.15 7.76 -2.91 -0.02 3.12 16 37 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -73.78 315.22 0.87 -72.90 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.29 Total: 34.51 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 4.35 Total: -5.25 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -4.47 Total: -95.82 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.06 Total: -40.64 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: -5.86 SS G_CDS: -1.27 Total: -7.12 kcal Total: -73.78 0.87 -72.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153882590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.644 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds