Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 119.95360 * 2 1 4 4 C 1.38257 * 120.13006 * 179.97438 * 3 2 1 5 5 C 1.38326 * 120.03025 * 0.03880 * 4 3 2 6 6 F 1.35101 * 120.05324 * 180.25563 * 5 4 3 7 7 C 1.38917 * 119.90281 * 359.97438 * 5 4 3 8 8 O 1.35957 * 120.06083 * 180.02562 * 7 5 4 9 9 C 1.42902 * 116.99760 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46792 * 179.97438 * 9 8 7 11 11 O 1.21298 * 120.00383 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99927 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00121 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99771 * 20.21842 * 13 12 10 15 15 C 1.38947 * 120.00171 * 200.21983 * 13 12 10 16 16 N 1.31412 * 119.99996 * 21.41960 * 15 13 12 17 17 Si 1.86796 * 120.00212 * 201.42616 * 15 13 12 18 18 H 1.48496 * 109.47279 * 60.00058 * 17 15 13 19 19 H 1.48506 * 109.47052 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46956 * 299.99645 * 17 15 13 21 21 C 1.46502 * 119.99570 * 0.02562 * 12 10 9 22 22 C 1.47200 * 109.47233 * 83.94897 * 21 12 10 23 23 N 6.53951 * 90.32988 * 201.97537 * 2 1 3 24 24 C 1.38186 * 119.95703 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47328 * 269.97849 * 1 2 3 26 26 H 1.08997 * 109.47602 * 29.98071 * 1 2 3 27 27 H 1.09008 * 109.46581 * 149.97923 * 1 2 3 28 28 H 1.08001 * 119.93823 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.98511 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47180 * 299.99761 * 9 8 7 31 31 H 1.08993 * 109.46866 * 60.00103 * 9 8 7 32 32 H 0.96996 * 120.00662 * 179.97438 * 16 15 13 33 33 H 1.09008 * 109.46718 * 203.95022 * 21 12 10 34 34 H 1.09000 * 109.47241 * 323.94265 * 21 12 10 35 35 H 1.08005 * 120.01057 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5798 1.2022 0.0005 5 6 4.2758 0.0067 0.0003 6 9 5.6268 0.0104 0.0060 7 6 3.5835 -1.1976 0.0000 8 8 4.2643 -2.3745 0.0002 9 6 3.4870 -3.5736 0.0005 10 6 4.4060 -4.7679 0.0001 11 8 5.6084 -4.6080 0.0001 12 7 3.8919 -6.0138 0.0008 13 6 4.7279 -7.1004 0.0010 14 1 5.7529 -6.9929 0.3239 15 6 4.2566 -8.3397 -0.4142 16 7 3.1939 -8.4144 -1.1836 17 14 5.1334 -9.8998 0.1213 18 1 5.1222 -9.9899 1.6035 19 1 4.4374 -11.0801 -0.4512 20 1 6.5371 -9.8695 -0.3622 21 6 2.4396 -6.2069 0.0014 22 6 1.9335 -6.1271 -1.3786 23 7 1.5446 -6.0643 -2.4471 24 6 2.1970 -1.1972 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6555 2.1322 -0.0004 29 1 4.1167 2.1393 0.0010 30 1 2.8582 -3.5988 0.8905 31 1 2.8582 -3.5991 -0.8894 32 1 2.8650 -9.2796 -1.4738 33 1 2.2034 -7.1857 0.4190 34 1 1.9702 -5.4310 0.6060 35 1 1.6564 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158292331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -51.058026 kcal Electronic energy + Delta-G solvation = -22633.756167 eV Core-core repulsion = 18933.666854 eV Total energy + Delta-G solvation = -3700.089313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.61667 -40.16758 -38.86989 -37.42256 -35.80183 -34.39212 -32.49172 -32.02476 -30.35317 -28.55798 -27.50376 -26.59639 -24.68112 -22.71770 -21.64928 -19.58958 -18.18741 -18.04452 -16.92436 -16.85383 -16.63501 -16.08884 -15.92180 -15.06787 -14.84367 -14.62238 -14.32026 -14.21312 -13.79559 -13.56316 -13.29208 -13.24168 -13.11899 -12.49729 -12.16988 -12.09432 -11.83652 -11.70435 -11.64114 -11.38671 -11.21346 -11.14995 -10.89144 -10.66621 -10.49365 -10.42480 -9.35565 -8.89993 -8.72506 -8.15513 -8.11090 -6.60174 -4.11895 1.03737 1.21711 2.91985 3.06749 3.18214 3.23376 3.42399 3.47528 3.67420 3.82116 4.04800 4.26422 4.53352 4.62576 4.71804 4.79163 4.94245 5.01110 5.06156 5.18267 5.29072 5.34859 5.41675 5.49064 5.54170 5.66518 5.89967 5.93164 5.98657 6.11364 6.32095 6.36486 6.61237 7.33080 7.38895 7.77802 8.16704 8.60312 8.87115 9.05169 9.56980 10.46152 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.004150 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.063607 B = 6744.987529 C = 7683.228614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.057 4.057 3 C -0.138 4.138 4 C -0.113 4.113 5 C 0.061 3.939 6 F -0.131 7.131 7 C 0.110 3.890 8 O -0.276 6.276 9 C 0.045 3.955 10 C 0.456 3.544 11 O -0.546 6.546 12 N -0.437 5.437 13 C -0.316 4.316 14 H 0.110 0.890 15 C 0.035 3.965 16 N -0.875 5.875 17 Si 0.931 3.069 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.219 3.781 22 C 0.239 3.761 23 N -0.464 5.464 24 C -0.188 4.188 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.276 0.724 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.306 13.574 5.967 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.057 4.057 3 C -0.157 4.157 4 C -0.132 4.132 5 C 0.041 3.959 6 F -0.109 7.109 7 C 0.062 3.938 8 O -0.187 6.187 9 C -0.034 4.034 10 C 0.243 3.757 11 O -0.426 6.426 12 N -0.159 5.159 13 C -0.442 4.442 14 H 0.128 0.872 15 C -0.170 4.170 16 N -0.513 5.513 17 Si 0.757 3.243 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.091 3.909 22 C -0.080 4.080 23 N -0.144 5.144 24 C -0.207 4.207 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.158 0.842 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.090 13.529 4.300 16.340 hybrid contribution 0.440 -1.104 0.382 1.248 sum -7.651 12.425 4.682 15.325 Atomic orbital electron populations 1.20813 0.90539 1.03167 1.02643 1.19751 0.96397 0.92240 0.97295 1.20736 0.92901 0.97883 1.04138 1.20955 0.94824 0.96177 1.01246 1.16997 0.77394 0.91743 1.09734 1.91519 1.28011 1.97181 1.94224 1.19175 0.91077 0.85994 0.97520 1.86277 1.33940 1.11026 1.87483 1.22730 0.94554 0.83705 1.02409 1.19541 0.88800 0.83173 0.84146 1.90616 1.14885 1.84620 1.52462 1.43524 1.03670 1.04371 1.64328 1.19684 0.96712 0.84494 1.43338 0.87232 1.25323 0.97196 0.99904 0.94545 1.69822 1.25073 1.26686 1.29715 0.85906 0.79495 0.79726 0.79162 1.19551 1.20939 1.19667 1.18757 0.82139 1.04654 0.85305 1.29392 0.92389 0.90674 0.95529 1.81038 1.10224 1.11813 1.11348 1.21104 0.91841 0.99655 1.08085 0.90747 0.91251 0.91160 0.85101 0.84211 0.89834 0.90157 0.91384 0.85288 0.89838 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.06 -0.60 5.88 -104.64 -0.62 -1.21 16 3 C -0.14 -1.37 9.69 -39.57 -0.38 -1.75 16 4 C -0.11 -1.30 10.02 -39.54 -0.40 -1.69 16 5 C 0.06 0.93 7.31 -39.30 -0.29 0.65 16 6 F -0.13 -2.27 17.11 2.25 0.04 -2.23 16 7 C 0.11 1.76 6.69 -39.18 -0.26 1.50 16 8 O -0.28 -5.39 9.53 -39.51 -0.38 -5.77 16 9 C 0.04 0.79 3.83 36.00 0.14 0.93 16 10 C 0.46 10.49 7.64 -10.98 -0.08 10.41 16 11 O -0.55 -14.99 16.17 -14.37 -0.23 -15.22 16 12 N -0.44 -9.90 2.60 -117.93 -0.31 -10.21 16 13 C -0.32 -7.95 9.27 -14.94 -0.14 -8.09 16 14 H 0.11 2.93 7.43 -52.49 -0.39 2.54 16 15 C 0.03 0.83 4.84 -17.47 -0.08 0.75 16 16 N -0.87 -21.44 9.58 55.50 0.53 -20.91 16 17 Si 0.93 19.15 29.60 -169.99 -5.03 14.12 16 18 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 C 0.22 4.04 4.91 -6.83 -0.03 4.00 16 22 C 0.24 4.98 12.83 -20.67 -0.27 4.71 16 23 N -0.46 -10.57 18.56 42.26 0.78 -9.78 16 24 C -0.19 -2.41 8.69 -39.45 -0.34 -2.76 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.07 0.52 8.08 -51.92 -0.42 0.10 16 28 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 29 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 30 H 0.08 1.15 6.94 -51.93 -0.36 0.79 16 31 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 32 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.13 2.40 6.63 -51.92 -0.34 2.06 16 34 H 0.08 1.10 6.69 -51.93 -0.35 0.75 16 35 H 0.14 1.56 6.30 -52.48 -0.33 1.23 16 LS Contribution 315.83 15.07 4.76 4.76 Total: -1.00 -32.41 315.83 -5.61 -38.02 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.38 Total: 0.27 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -2.39 Total: 6.94 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 1.01 Total: -40.90 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.61 Total: -20.98 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.41 -5.61 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158292331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.039 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds