Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 119.95360 * 2 1 4 4 C 1.38257 * 120.13006 * 179.97438 * 3 2 1 5 5 C 1.38326 * 120.03025 * 0.03880 * 4 3 2 6 6 F 1.35101 * 120.05324 * 180.25563 * 5 4 3 7 7 C 1.38917 * 119.90281 * 359.97438 * 5 4 3 8 8 O 1.35957 * 120.06083 * 180.02562 * 7 5 4 9 9 C 1.42902 * 116.99760 * 179.97438 * 8 7 5 10 10 C 1.50698 * 109.46792 * 179.97438 * 9 8 7 11 11 O 1.21298 * 120.00383 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99927 * 179.97438 * 10 9 8 13 13 C 1.37096 * 120.00121 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99771 * 20.21842 * 13 12 10 15 15 C 1.38947 * 120.00171 * 200.21983 * 13 12 10 16 16 N 1.31412 * 119.99996 * 21.41960 * 15 13 12 17 17 Si 1.86796 * 120.00212 * 201.42616 * 15 13 12 18 18 H 1.48496 * 109.47279 * 60.00058 * 17 15 13 19 19 H 1.48506 * 109.47052 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46956 * 299.99645 * 17 15 13 21 21 C 1.46502 * 119.99570 * 0.02562 * 12 10 9 22 22 C 1.47200 * 109.47233 * 83.94897 * 21 12 10 23 23 N 6.53951 * 90.32988 * 201.97537 * 2 1 3 24 24 C 1.38186 * 119.95703 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47328 * 269.97849 * 1 2 3 26 26 H 1.08997 * 109.47602 * 29.98071 * 1 2 3 27 27 H 1.09008 * 109.46581 * 149.97923 * 1 2 3 28 28 H 1.08001 * 119.93823 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.98511 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47180 * 299.99761 * 9 8 7 31 31 H 1.08993 * 109.46866 * 60.00103 * 9 8 7 32 32 H 0.96996 * 120.00662 * 179.97438 * 16 15 13 33 33 H 1.09008 * 109.46718 * 203.95022 * 21 12 10 34 34 H 1.09000 * 109.47241 * 323.94265 * 21 12 10 35 35 H 1.08005 * 120.01057 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5798 1.2022 0.0005 5 6 4.2758 0.0067 0.0003 6 9 5.6268 0.0104 0.0060 7 6 3.5835 -1.1976 0.0000 8 8 4.2643 -2.3745 0.0002 9 6 3.4870 -3.5736 0.0005 10 6 4.4060 -4.7679 0.0001 11 8 5.6084 -4.6080 0.0001 12 7 3.8919 -6.0138 0.0008 13 6 4.7279 -7.1004 0.0010 14 1 5.7529 -6.9929 0.3239 15 6 4.2566 -8.3397 -0.4142 16 7 3.1939 -8.4144 -1.1836 17 14 5.1334 -9.8998 0.1213 18 1 5.1222 -9.9899 1.6035 19 1 4.4374 -11.0801 -0.4512 20 1 6.5371 -9.8695 -0.3622 21 6 2.4396 -6.2069 0.0014 22 6 1.9335 -6.1271 -1.3786 23 7 1.5446 -6.0643 -2.4471 24 6 2.1970 -1.1972 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6555 2.1322 -0.0004 29 1 4.1167 2.1393 0.0010 30 1 2.8582 -3.5988 0.8905 31 1 2.8582 -3.5991 -0.8894 32 1 2.8650 -9.2796 -1.4738 33 1 2.2034 -7.1857 0.4190 34 1 1.9702 -5.4310 0.6060 35 1 1.6564 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158292331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -70.445515 kcal Electronic energy + Delta-G solvation = -22634.596872 eV Core-core repulsion = 18933.666854 eV Total energy + Delta-G solvation = -3700.930018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.80561 -41.41775 -40.38082 -38.61081 -37.56194 -36.17975 -33.91240 -33.29292 -31.39774 -29.97788 -29.08411 -27.47568 -26.35697 -23.79187 -22.61044 -21.22029 -19.85904 -19.33962 -18.35307 -18.08478 -17.96616 -17.46913 -17.31998 -16.57124 -16.35818 -15.99881 -15.45854 -15.23268 -15.13500 -14.94045 -14.73712 -14.35244 -14.20884 -13.92780 -13.76202 -13.47042 -13.18179 -12.95812 -12.83872 -12.82778 -12.51285 -12.39449 -12.24375 -12.12779 -12.09674 -11.88560 -11.17921 -10.55820 -10.00670 -9.82456 -9.15606 -8.46735 -6.05181 0.10710 0.26238 1.35087 1.45665 1.53785 1.64121 1.79765 2.07475 2.18294 2.35925 2.55771 2.93505 3.05002 3.28849 3.48794 3.63418 3.78499 3.87014 3.91728 4.07851 4.17418 4.27168 4.48762 4.53777 4.75862 4.81864 4.92465 4.93755 5.03992 5.21459 5.32557 5.43988 5.52897 5.70582 5.92978 6.22017 6.36398 6.95408 7.02662 7.21840 7.77427 8.57000 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023039 B = 0.004150 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.063607 B = 6744.987529 C = 7683.228614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.052 4.052 3 C -0.126 4.126 4 C -0.106 4.106 5 C 0.021 3.979 6 F -0.155 7.155 7 C 0.076 3.924 8 O -0.318 6.318 9 C 0.058 3.942 10 C 0.444 3.556 11 O -0.607 6.607 12 N -0.443 5.443 13 C -0.346 4.346 14 H 0.081 0.919 15 C 0.012 3.988 16 N -0.887 5.887 17 Si 0.989 3.011 18 H -0.257 1.257 19 H -0.276 1.276 20 H -0.285 1.285 21 C 0.217 3.783 22 C 0.252 3.748 23 N -0.501 5.501 24 C -0.192 4.192 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.171 0.829 29 H 0.165 0.835 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.278 0.722 33 H 0.130 0.870 34 H 0.146 0.854 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 14.815 6.859 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.124 4.124 5 C 0.001 3.999 6 F -0.134 7.134 7 C 0.030 3.970 8 O -0.231 6.231 9 C -0.020 4.020 10 C 0.233 3.767 11 O -0.491 6.491 12 N -0.164 5.164 13 C -0.473 4.473 14 H 0.099 0.901 15 C -0.191 4.191 16 N -0.525 5.525 17 Si 0.813 3.187 18 H -0.181 1.181 19 H -0.201 1.201 20 H -0.211 1.211 21 C 0.091 3.909 22 C -0.066 4.066 23 N -0.181 5.181 24 C -0.210 4.210 25 H 0.109 0.891 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.189 0.811 29 H 0.182 0.818 30 H 0.147 0.853 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -11.190 14.777 5.196 19.250 hybrid contribution 1.323 -1.391 0.080 1.921 sum -9.868 13.386 5.276 17.447 Atomic orbital electron populations 1.20910 0.87855 1.04295 1.03992 1.20223 0.98243 0.91562 0.95157 1.21252 0.92203 0.99392 1.01499 1.21314 0.95738 0.95643 0.99744 1.17602 0.76736 0.93208 1.12349 1.91444 1.29895 1.97361 1.94733 1.19512 0.92523 0.84815 1.00157 1.86197 1.35830 1.12342 1.88733 1.22585 0.93050 0.81444 1.04893 1.20476 0.88891 0.84638 0.82717 1.90569 1.17764 1.85750 1.55008 1.43682 1.05281 1.03900 1.63503 1.19578 0.96523 0.86193 1.45024 0.90121 1.25920 0.97695 1.01643 0.93848 1.69897 1.25685 1.27287 1.29595 0.85049 0.77610 0.76588 0.79441 1.18144 1.20139 1.21093 1.19204 0.79854 1.07101 0.84789 1.29823 0.91469 0.89492 0.95775 1.81043 1.11467 1.13237 1.12370 1.21347 0.90438 1.01454 1.07785 0.89098 0.89301 0.90972 0.81125 0.81772 0.85340 0.89060 0.91222 0.85204 0.83636 0.82939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.23 0.71 -0.47 16 2 C -0.05 -0.90 5.88 -19.87 -0.12 -1.02 16 3 C -0.13 -1.99 9.69 22.28 0.22 -1.77 16 4 C -0.11 -2.21 10.02 22.30 0.22 -1.99 16 5 C 0.02 0.64 7.31 22.45 0.16 0.80 16 6 F -0.16 -5.70 17.11 44.97 0.77 -4.93 16 7 C 0.08 2.44 6.69 22.53 0.15 2.59 16 8 O -0.32 -12.78 9.53 -74.03 -0.71 -13.49 16 9 C 0.06 2.03 3.83 71.24 0.27 2.30 16 10 C 0.44 20.85 7.64 87.66 0.67 21.52 16 11 O -0.61 -35.18 16.17 15.95 0.26 -34.92 16 12 N -0.44 -20.17 2.60 -645.40 -1.68 -21.85 16 13 C -0.35 -17.86 9.27 84.04 0.78 -17.08 16 14 H 0.08 4.55 7.43 -2.91 -0.02 4.53 16 15 C 0.01 0.59 4.84 84.93 0.41 1.00 16 16 N -0.89 -42.98 9.58 21.66 0.21 -42.77 16 17 Si 0.99 39.21 29.60 68.60 2.03 41.24 16 18 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 19 H -0.28 -10.56 7.11 99.48 0.71 -9.86 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 21 C 0.22 7.59 4.91 84.57 0.42 8.01 16 22 C 0.25 10.20 12.83 89.41 1.15 11.35 16 23 N -0.50 -22.39 18.56 20.04 0.37 -22.01 16 24 C -0.19 -4.50 8.69 22.36 0.19 -4.31 16 25 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.09 0.62 8.08 -2.39 -0.02 0.60 16 27 H 0.07 0.76 8.08 -2.38 -0.02 0.75 16 28 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.13 3.19 6.94 -2.39 -0.02 3.17 16 31 H 0.09 2.94 7.01 -2.39 -0.02 2.92 16 32 H 0.28 12.98 8.31 -92.71 -0.77 12.21 16 33 H 0.13 4.60 6.63 -2.38 -0.02 4.59 16 34 H 0.15 3.25 6.69 -2.39 -0.02 3.23 16 35 H 0.15 2.98 6.30 -2.91 -0.02 2.96 16 Total: -1.00 -75.90 315.83 7.64 -68.26 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.14 Total: 9.54 kcal Atomic # 6 Polarization: 15.70 SS G_CDS: 5.24 Total: 20.94 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.10 Total: -86.63 kcal Atomic # 8 Polarization: -47.96 SS G_CDS: -0.45 Total: -48.41 kcal Atomic # 9 Polarization: -5.70 SS G_CDS: 0.77 Total: -4.93 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 2.03 Total: 41.24 kcal Total: -75.90 7.64 -68.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158292331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.185 kcal (2) G-P(sol) polarization free energy of solvation -75.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds