Wall clock time and date at job start Tue Mar 31 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46875 * 2 1 4 4 C 1.50707 * 109.46918 * 119.99781 * 2 1 3 5 5 H 1.07996 * 119.99700 * 120.00737 * 4 2 1 6 6 C 1.37876 * 119.99619 * 299.99862 * 4 2 1 7 7 N 1.31514 * 119.99348 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00413 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46836 * 90.00058 * 8 6 4 10 10 H 1.48499 * 109.47206 * 209.99828 * 8 6 4 11 11 H 1.48489 * 109.47255 * 330.00056 * 8 6 4 12 12 N 1.46901 * 109.47272 * 239.99715 * 2 1 3 13 13 C 1.46901 * 110.99776 * 183.95166 * 12 2 1 14 14 C 1.46899 * 110.99774 * 60.00035 * 12 2 1 15 15 C 1.50701 * 109.46841 * 190.00110 * 14 12 2 16 16 C 1.34472 * 126.05418 * 94.99990 * 15 14 12 17 17 O 1.34907 * 107.33276 * 179.97438 * 16 15 14 18 18 C 1.34541 * 107.67935 * 359.97438 * 17 16 15 19 19 C 1.47019 * 125.75996 * 180.02562 * 18 17 16 20 20 C 1.36180 * 125.33664 * 359.97438 * 19 18 17 21 21 C 1.37719 * 114.44343 * 179.97438 * 20 19 18 22 22 C 1.33715 * 115.19942 * 0.02562 * 21 20 19 23 23 S 1.75829 * 109.95646 * 359.73278 * 22 21 20 24 24 N 1.31516 * 108.48068 * 0.02562 * 18 17 16 25 25 H 1.08994 * 109.47045 * 60.00303 * 1 2 3 26 26 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47166 * 300.00085 * 1 2 3 28 28 H 0.97006 * 120.00151 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47351 * 296.04957 * 13 12 2 30 30 H 1.09008 * 109.46856 * 56.05205 * 13 12 2 31 31 H 1.09002 * 109.46920 * 176.04173 * 13 12 2 32 32 H 1.09002 * 109.47211 * 69.99846 * 14 12 2 33 33 H 1.09002 * 109.47073 * 309.99785 * 14 12 2 34 34 H 1.07990 * 126.33204 * 359.97438 * 16 15 14 35 35 H 1.08000 * 122.77313 * 0.02562 * 20 19 18 36 36 H 1.08002 * 122.40061 * 179.97438 * 21 20 19 37 37 H 1.07993 * 125.02451 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9953 3.9067 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 3.4851 -0.7945 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 6 1.8580 -0.8913 -3.6158 16 6 1.0202 -1.7688 -4.1958 17 8 1.6806 -2.3330 -5.2280 18 6 2.9130 -1.7945 -5.2679 19 6 3.9644 -2.1262 -6.2405 20 6 3.8461 -3.0326 -7.2499 21 6 4.9728 -3.1665 -8.0304 22 6 6.0041 -2.3912 -7.6794 23 16 5.5699 -1.4091 -6.2871 24 7 3.0182 -0.9214 -4.2900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9033 -0.5277 4.4376 29 1 3.9192 0.2043 -1.2299 30 1 3.8070 -1.2915 -0.2717 31 1 3.8165 -1.3722 -2.0498 32 1 2.0519 0.9345 -2.5280 33 1 0.4722 0.1323 -2.3563 34 1 0.0063 -1.9823 -3.8916 35 1 2.9432 -3.5988 -7.4243 36 1 5.0203 -3.8495 -8.8658 37 1 6.9610 -2.3684 -8.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161731882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:56 Heat of formation + Delta-G solvation = 81.712241 kcal Electronic energy + Delta-G solvation = -20422.395216 eV Core-core repulsion = 17294.276430 eV Total energy + Delta-G solvation = -3128.118786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.15452 -37.93729 -37.38474 -34.73125 -32.75610 -31.74269 -30.13084 -29.01063 -26.87487 -24.85953 -24.57923 -23.72022 -22.07224 -21.27224 -19.60355 -18.99886 -18.17875 -16.87726 -16.60897 -16.46438 -15.79815 -15.28556 -14.55396 -14.30123 -14.10087 -13.70253 -13.34990 -13.28214 -12.98694 -12.78048 -12.52492 -12.42479 -11.99473 -11.73861 -11.21459 -11.06870 -11.01053 -10.87454 -10.59117 -10.55151 -10.34543 -10.12209 -9.74766 -9.47958 -9.02919 -8.77393 -8.57032 -8.18150 -7.38503 -6.07095 -4.05915 0.22238 1.10853 1.68815 1.70421 2.36820 2.85843 2.95667 3.25528 3.35619 3.38071 3.84086 4.38927 4.74207 4.83295 4.97485 5.07413 5.10702 5.23361 5.26457 5.58452 5.64968 5.80502 5.89606 5.94140 6.06130 6.08959 6.16673 6.29062 6.36010 6.40216 6.50178 6.62855 6.78102 6.98466 7.25537 7.55846 7.74878 7.92137 8.05829 8.64288 8.99688 9.54258 11.05642 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032972 B = 0.003333 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.999836 B = 8398.295423 C = 8819.763134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.506 4.506 5 H 0.084 0.916 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.523 5.523 13 C 0.039 3.961 14 C 0.122 3.878 15 C 0.017 3.983 16 C -0.055 4.055 17 O -0.196 6.196 18 C 0.243 3.757 19 C -0.125 4.125 20 C -0.105 4.105 21 C -0.137 4.137 22 C -0.222 4.222 23 S 0.211 5.789 24 N -0.456 5.456 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.013 0.987 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -2.035 -23.439 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.017 0.983 4 C -0.544 4.544 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.247 5.247 13 C -0.109 4.109 14 C -0.006 4.006 15 C -0.105 4.105 16 C -0.127 4.127 17 O -0.082 6.082 18 C 0.039 3.961 19 C -0.243 4.243 20 C -0.139 4.139 21 C -0.167 4.167 22 C -0.359 4.359 23 S 0.477 5.523 24 N -0.187 5.187 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.237 0.763 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.950 -1.071 -22.249 22.622 hybrid contribution -1.772 0.067 -0.642 1.886 sum 2.178 -1.004 -22.891 23.017 Atomic orbital electron populations 1.22242 0.98566 1.01419 0.98303 1.19711 0.91417 0.92778 0.88641 0.98286 1.20973 1.31952 1.13621 0.87818 0.89858 1.24920 0.95852 0.96605 0.95774 1.69880 1.45676 1.40293 0.97879 0.86880 0.80733 0.83823 0.76891 1.20506 1.22478 1.19395 1.61993 1.10820 1.51480 1.00436 1.22250 0.87215 0.99279 1.02132 1.20498 1.00988 0.92934 0.86209 1.21770 0.89076 1.00574 0.99071 1.24935 1.00225 0.98050 0.89445 1.84517 1.24075 1.54983 1.44638 1.22259 0.83706 0.93974 0.96195 1.21460 0.96621 1.06311 0.99948 1.20644 1.00507 0.98522 0.94259 1.19952 0.92401 1.02171 1.02178 1.26081 1.04035 1.03171 1.02646 1.84592 1.03115 1.38420 1.26167 1.70746 1.24822 1.18077 1.05077 0.95183 0.91915 0.93889 0.92601 0.96825 0.90038 0.93052 0.93873 0.89022 0.76318 0.83531 0.83700 0.81233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 8.47 37.16 0.31 -2.84 16 2 C 0.18 4.31 1.65 -68.86 -0.11 4.20 16 3 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 4 C -0.51 -14.16 8.46 -34.44 -0.29 -14.45 16 5 H 0.08 2.55 6.65 -52.49 -0.35 2.20 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 8 Si 0.89 21.83 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 10 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 11 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 12 N -0.52 -11.13 4.61 -237.72 -1.10 -12.23 16 13 C 0.04 0.84 9.07 60.07 0.54 1.38 16 14 C 0.12 2.17 5.32 -4.98 -0.03 2.14 16 15 C 0.02 0.28 5.82 -82.88 -0.48 -0.20 16 16 C -0.06 -0.77 12.08 29.40 0.36 -0.42 16 17 O -0.20 -2.84 10.79 3.37 0.04 -2.80 16 18 C 0.24 3.69 8.08 -14.13 -0.11 3.58 16 19 C -0.12 -1.57 6.46 -36.76 -0.24 -1.80 16 20 C -0.11 -1.05 10.15 -40.51 -0.41 -1.46 16 21 C -0.14 -1.09 10.15 -41.36 -0.42 -1.51 16 22 C -0.22 -1.74 11.21 29.15 0.33 -1.41 16 23 S 0.21 2.25 23.30 -107.50 -2.50 -0.26 16 24 N -0.46 -7.79 10.33 -8.12 -0.08 -7.87 16 25 H 0.03 0.53 6.20 -51.93 -0.32 0.21 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 1.89 6.10 -51.92 -0.32 1.57 16 31 H 0.05 1.04 6.53 -51.93 -0.34 0.70 16 32 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.09 1.44 5.83 -51.93 -0.30 1.14 16 34 H 0.22 2.27 8.06 -52.49 -0.42 1.85 16 35 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -32.17 316.96 -7.21 -39.37 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.31 Total: -1.16 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.65 Total: -10.88 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.41 Total: -46.73 kcal Atomic # 8 Polarization: -2.84 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.14 Total: 17.69 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.50 Total: -0.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.17 -7.21 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161731882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.087 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds