Wall clock time and date at job start Tue Mar 31 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46875 * 2 1 4 4 C 1.50707 * 109.46918 * 119.99781 * 2 1 3 5 5 H 1.07996 * 119.99700 * 120.00737 * 4 2 1 6 6 C 1.37876 * 119.99619 * 299.99862 * 4 2 1 7 7 N 1.31514 * 119.99348 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00413 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46836 * 90.00058 * 8 6 4 10 10 H 1.48499 * 109.47206 * 209.99828 * 8 6 4 11 11 H 1.48489 * 109.47255 * 330.00056 * 8 6 4 12 12 N 1.46901 * 109.47272 * 239.99715 * 2 1 3 13 13 C 1.46901 * 110.99776 * 183.95166 * 12 2 1 14 14 C 1.46899 * 110.99774 * 60.00035 * 12 2 1 15 15 C 1.50701 * 109.46841 * 190.00110 * 14 12 2 16 16 C 1.34472 * 126.05418 * 94.99990 * 15 14 12 17 17 O 1.34907 * 107.33276 * 179.97438 * 16 15 14 18 18 C 1.34541 * 107.67935 * 359.97438 * 17 16 15 19 19 C 1.47019 * 125.75996 * 180.02562 * 18 17 16 20 20 C 1.36180 * 125.33664 * 359.97438 * 19 18 17 21 21 C 1.37719 * 114.44343 * 179.97438 * 20 19 18 22 22 C 1.33715 * 115.19942 * 0.02562 * 21 20 19 23 23 S 1.75829 * 109.95646 * 359.73278 * 22 21 20 24 24 N 1.31516 * 108.48068 * 0.02562 * 18 17 16 25 25 H 1.08994 * 109.47045 * 60.00303 * 1 2 3 26 26 H 1.09002 * 109.46875 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47166 * 300.00085 * 1 2 3 28 28 H 0.97006 * 120.00151 * 180.02562 * 7 6 4 29 29 H 1.08993 * 109.47351 * 296.04957 * 13 12 2 30 30 H 1.09008 * 109.46856 * 56.05205 * 13 12 2 31 31 H 1.09002 * 109.46920 * 176.04173 * 13 12 2 32 32 H 1.09002 * 109.47211 * 69.99846 * 14 12 2 33 33 H 1.09002 * 109.47073 * 309.99785 * 14 12 2 34 34 H 1.07990 * 126.33204 * 359.97438 * 16 15 14 35 35 H 1.08000 * 122.77313 * 0.02562 * 20 19 18 36 36 H 1.08002 * 122.40061 * 179.97438 * 21 20 19 37 37 H 1.07993 * 125.02451 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8727 2.6997 10 1 0.9758 1.9953 3.9067 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6926 -1.1994 13 6 3.4851 -0.7945 -1.1869 14 6 1.5487 -0.0265 -2.4210 15 6 1.8580 -0.8913 -3.6158 16 6 1.0202 -1.7688 -4.1958 17 8 1.6806 -2.3330 -5.2280 18 6 2.9130 -1.7945 -5.2679 19 6 3.9644 -2.1262 -6.2405 20 6 3.8461 -3.0326 -7.2499 21 6 4.9728 -3.1665 -8.0304 22 6 6.0041 -2.3912 -7.6794 23 16 5.5699 -1.4091 -6.2871 24 7 3.0182 -0.9214 -4.2900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9033 -0.5277 4.4376 29 1 3.9192 0.2043 -1.2299 30 1 3.8070 -1.2915 -0.2717 31 1 3.8165 -1.3722 -2.0498 32 1 2.0519 0.9345 -2.5280 33 1 0.4722 0.1323 -2.3563 34 1 0.0063 -1.9823 -3.8916 35 1 2.9432 -3.5988 -7.4243 36 1 5.0203 -3.8495 -8.8658 37 1 6.9610 -2.3684 -8.1796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161731882.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:56 Heat of formation + Delta-G solvation = 57.421620 kcal Electronic energy + Delta-G solvation = -20423.448536 eV Core-core repulsion = 17294.276430 eV Total energy + Delta-G solvation = -3129.172107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.26921 -39.09948 -38.61722 -36.02158 -34.66320 -32.95953 -31.85757 -30.14994 -28.30289 -26.51475 -25.64145 -25.35772 -23.06969 -22.52580 -21.29024 -19.91261 -19.10071 -18.86912 -17.75886 -17.55148 -17.15021 -16.53610 -16.13566 -15.88736 -15.43641 -15.01701 -14.74367 -14.51242 -14.24240 -14.10551 -13.73467 -13.62595 -13.34005 -13.18556 -12.78212 -12.65798 -12.61382 -12.29416 -12.12358 -12.03046 -11.79160 -11.61933 -11.42857 -11.04592 -10.73297 -10.62677 -9.55319 -9.18514 -9.07249 -8.27941 -6.31936 -0.60407 0.30994 0.69712 1.00010 1.30971 1.37000 1.46706 1.47130 1.85240 1.95404 2.32493 2.81204 3.05688 3.32660 3.72746 3.96798 4.16661 4.27892 4.39894 4.42032 4.54134 4.56548 4.62262 4.65035 4.68866 4.81096 4.87245 4.88205 4.98820 5.04553 5.10199 5.18094 5.29688 5.41766 5.43089 5.64488 5.98486 6.24714 6.63301 6.64569 6.74332 7.32652 8.88581 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.032972 B = 0.003333 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.999836 B = 8398.295423 C = 8819.763134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.184 3.816 3 H -0.009 1.009 4 C -0.510 4.510 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.951 3.049 9 H -0.259 1.259 10 H -0.301 1.301 11 H -0.251 1.251 12 N -0.530 5.530 13 C 0.053 3.947 14 C 0.129 3.871 15 C -0.017 4.017 16 C -0.039 4.039 17 O -0.196 6.196 18 C 0.245 3.755 19 C -0.170 4.170 20 C -0.086 4.086 21 C -0.143 4.143 22 C -0.193 4.193 23 S 0.169 5.831 24 N -0.491 5.491 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.266 0.734 29 H 0.010 0.990 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.117 0.883 34 H 0.257 0.743 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 -1.834 -26.457 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.076 3.924 3 H 0.008 0.992 4 C -0.548 4.548 5 H 0.057 0.943 6 C -0.185 4.185 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.185 1.185 10 H -0.229 1.229 11 H -0.175 1.175 12 N -0.255 5.255 13 C -0.095 4.095 14 C 0.001 3.999 15 C -0.138 4.138 16 C -0.111 4.111 17 O -0.083 6.083 18 C 0.040 3.960 19 C -0.289 4.289 20 C -0.121 4.121 21 C -0.172 4.172 22 C -0.330 4.330 23 S 0.434 5.566 24 N -0.222 5.222 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.135 0.865 34 H 0.272 0.728 35 H 0.177 0.823 36 H 0.198 0.802 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.611 -0.867 -25.292 25.442 hybrid contribution -1.197 -0.147 0.119 1.212 sum 1.415 -1.014 -25.173 25.233 Atomic orbital electron populations 1.22132 0.95931 1.01988 1.00008 1.19566 0.93375 0.91547 0.87867 0.99196 1.21215 1.31074 1.12414 0.90128 0.94290 1.25796 0.97448 1.00051 0.95217 1.70041 1.47756 1.42587 0.98582 0.85824 0.79485 0.79762 0.77141 1.18467 1.22856 1.17478 1.61921 1.10256 1.52027 1.01299 1.22033 0.87960 0.98772 1.00758 1.20492 1.02101 0.92515 0.84792 1.21690 0.90057 1.02314 0.99703 1.25539 1.00985 0.96295 0.88240 1.84536 1.24015 1.54962 1.44792 1.22732 0.84190 0.93097 0.95972 1.21602 0.96839 1.08979 1.01433 1.21016 1.01556 0.96663 0.92863 1.20309 0.91398 1.02691 1.02782 1.26506 1.05206 1.00902 1.00363 1.84717 1.03209 1.40038 1.28604 1.70682 1.25576 1.19623 1.06351 0.90968 0.92020 0.94535 0.92505 0.97101 0.93136 0.92270 0.94563 0.86515 0.72756 0.82299 0.80238 0.77914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.47 71.98 0.61 -5.12 16 2 C 0.18 8.66 1.65 44.17 0.07 8.73 16 3 H -0.01 -0.46 7.20 -2.39 -0.02 -0.48 16 4 C -0.51 -29.46 8.46 25.60 0.22 -29.24 16 5 H 0.04 2.54 6.65 -2.91 -0.02 2.52 16 6 C 0.01 0.70 5.45 84.65 0.46 1.16 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.95 44.70 24.37 68.60 1.67 46.38 16 9 H -0.26 -11.34 6.87 99.48 0.68 -10.66 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 12 N -0.53 -22.59 4.61 -906.01 -4.18 -26.77 16 13 C 0.05 2.36 9.07 127.69 1.16 3.52 16 14 C 0.13 4.39 5.32 85.56 0.46 4.85 16 15 C -0.02 -0.55 5.82 41.33 0.24 -0.31 16 16 C -0.04 -1.03 12.08 66.96 0.81 -0.22 16 17 O -0.20 -5.43 10.79 -10.84 -0.12 -5.55 16 18 C 0.24 7.36 8.08 87.04 0.70 8.06 16 19 C -0.17 -4.16 6.46 24.09 0.16 -4.00 16 20 C -0.09 -1.53 10.15 21.67 0.22 -1.31 16 21 C -0.14 -1.77 10.15 21.12 0.21 -1.56 16 22 C -0.19 -2.43 11.21 66.79 0.75 -1.69 16 23 S 0.17 3.51 23.30 -56.49 -1.32 2.19 16 24 N -0.49 -16.87 10.33 -293.48 -3.03 -19.90 16 25 H 0.07 2.27 6.20 -2.39 -0.01 2.25 16 26 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.04 1.51 3.27 -2.39 -0.01 1.50 16 28 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 29 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 2.51 6.10 -2.38 -0.01 2.49 16 31 H 0.06 2.50 6.53 -2.39 -0.02 2.48 16 32 H 0.04 1.28 8.12 -2.39 -0.02 1.26 16 33 H 0.12 3.30 5.83 -2.39 -0.01 3.29 16 34 H 0.26 4.38 8.06 -2.92 -0.02 4.36 16 35 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 36 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -73.26 316.96 0.41 -72.86 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.01 Total: 7.47 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: 6.07 Total: -17.12 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -6.91 Total: -106.23 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.12 Total: -5.55 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.67 Total: 46.38 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.32 Total: 2.19 kcal Total: -73.26 0.41 -72.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161731882.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.280 kcal (2) G-P(sol) polarization free energy of solvation -73.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds