Wall clock time and date at job start Tue Mar 31 2020 06:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46964 * 2 1 4 4 C 1.50701 * 109.47094 * 240.00240 * 2 1 3 5 5 H 1.07997 * 119.99641 * 239.99399 * 4 2 1 6 6 C 1.37874 * 120.00386 * 59.99829 * 4 2 1 7 7 N 1.31519 * 119.99604 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00422 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46959 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47302 * 120.00198 * 8 6 4 11 11 H 1.48503 * 109.47333 * 239.99985 * 8 6 4 12 12 N 1.46897 * 109.47174 * 119.99860 * 2 1 3 13 13 C 1.46906 * 110.99966 * 176.04625 * 12 2 1 14 14 C 1.46896 * 111.00191 * 300.00217 * 12 2 1 15 15 C 1.50696 * 109.47232 * 170.00200 * 14 12 2 16 16 C 1.34472 * 126.05684 * 94.99597 * 15 14 12 17 17 O 1.34906 * 107.33430 * 179.75732 * 16 15 14 18 18 C 1.34535 * 107.68109 * 0.24359 * 17 16 15 19 19 C 1.47018 * 125.76670 * 180.02562 * 18 17 16 20 20 C 1.36182 * 125.32723 * 0.02562 * 19 18 17 21 21 C 1.37733 * 114.43723 * 180.02562 * 20 19 18 22 22 C 1.33704 * 115.19566 * 0.02562 * 21 20 19 23 23 S 1.75832 * 109.96155 * 359.73304 * 22 21 20 24 24 N 1.31524 * 108.47779 * 359.97438 * 18 17 16 25 25 H 1.09002 * 109.47038 * 300.00139 * 1 2 3 26 26 H 1.08998 * 109.47125 * 60.00221 * 1 2 3 27 27 H 1.08996 * 109.46712 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99916 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47043 * 183.95645 * 13 12 2 30 30 H 1.09005 * 109.46949 * 303.95765 * 13 12 2 31 31 H 1.08998 * 109.47120 * 63.95604 * 13 12 2 32 32 H 1.09001 * 109.47261 * 49.99778 * 14 12 2 33 33 H 1.09000 * 109.46835 * 289.99843 * 14 12 2 34 34 H 1.08002 * 126.33493 * 0.02661 * 16 15 14 35 35 H 1.08002 * 122.78161 * 0.02562 * 20 19 18 36 36 H 1.08007 * 122.39845 * 179.97438 * 21 20 19 37 37 H 1.07999 * 125.02056 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2863 -3.6038 10 1 1.1678 -1.5865 -4.8166 11 1 3.1472 -0.1856 -4.8161 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7945 1.1870 14 6 1.5487 -0.0264 2.4210 15 6 1.8580 -0.8911 3.6158 16 6 2.9425 -0.7923 4.4047 17 8 2.8349 -1.7422 5.3567 18 6 1.6901 -2.4137 5.1363 19 6 1.1823 -3.5339 5.9417 20 6 1.7989 -4.0601 7.0360 21 6 1.1239 -5.1084 7.6213 22 6 -0.0258 -5.4469 7.0286 23 16 -0.3193 -4.4007 5.6462 24 7 1.1012 -1.8980 4.0794 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 0.7089 1.1614 -3.4844 29 1 3.8164 -1.3721 2.0500 30 1 3.8070 -1.2914 0.2718 31 1 3.9193 0.2044 1.2300 32 1 0.4722 0.1324 2.3563 33 1 2.0519 0.9346 2.5280 34 1 3.7483 -0.0811 4.2988 35 1 2.7391 -3.6864 7.4137 36 1 1.4971 -5.6207 8.4958 37 1 -0.6797 -6.2427 7.3535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161731995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:58 Heat of formation + Delta-G solvation = 51.100844 kcal Electronic energy + Delta-G solvation = -20361.141370 eV Core-core repulsion = 17231.695173 eV Total energy + Delta-G solvation = -3129.446196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.28161 -38.95430 -38.59275 -35.99957 -34.75105 -32.82733 -31.14168 -29.92877 -28.45614 -26.68328 -25.69591 -25.03299 -23.05739 -22.57521 -21.28112 -19.91936 -19.09815 -18.34773 -17.80349 -17.57133 -17.02106 -16.56387 -15.99952 -15.74016 -15.50695 -14.87124 -14.77428 -14.28517 -14.09399 -13.79166 -13.66211 -13.44988 -13.19393 -12.97815 -12.90575 -12.65737 -12.51110 -12.26594 -12.10052 -11.97294 -11.83587 -11.73274 -11.48998 -10.92963 -10.66026 -10.49313 -9.54748 -9.17513 -8.93197 -8.11987 -6.23466 -0.60004 0.31975 0.67013 1.02153 1.40503 1.42731 1.49037 1.54698 1.82745 1.97361 2.42454 2.82935 3.16294 3.42888 3.83085 3.89532 4.17223 4.28592 4.43611 4.52654 4.55648 4.60972 4.68759 4.75591 4.80696 4.89970 5.00762 5.02536 5.07118 5.15607 5.24006 5.28907 5.43031 5.47722 5.71151 5.75915 6.23881 6.36856 6.64063 6.70867 6.90293 7.45373 8.94282 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.003371 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.420640 B = 8304.337275 C = 8699.781274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.220 3.780 3 H -0.026 1.026 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.545 5.545 13 C 0.041 3.959 14 C 0.131 3.869 15 C -0.006 4.006 16 C -0.055 4.055 17 O -0.194 6.194 18 C 0.246 3.754 19 C -0.171 4.171 20 C -0.084 4.084 21 C -0.143 4.143 22 C -0.192 4.192 23 S 0.167 5.833 24 N -0.488 5.488 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.262 0.738 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.254 0.746 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.089 -9.263 22.137 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 H -0.009 1.009 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.204 1.204 12 N -0.270 5.270 13 C -0.107 4.107 14 C 0.002 3.998 15 C -0.127 4.127 16 C -0.126 4.126 17 O -0.081 6.081 18 C 0.041 3.959 19 C -0.289 4.289 20 C -0.119 4.119 21 C -0.171 4.171 22 C -0.329 4.329 23 S 0.432 5.568 24 N -0.218 5.218 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.270 0.730 35 H 0.178 0.822 36 H 0.199 0.801 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.086 -9.731 20.669 22.845 hybrid contribution 2.171 0.983 -0.049 2.383 sum 2.257 -8.748 20.620 22.512 Atomic orbital electron populations 1.21680 0.97594 0.98931 0.99749 1.19037 0.92423 0.90534 0.86684 1.00889 1.21429 1.31142 1.12237 0.90943 0.92499 1.25689 0.95345 0.95765 1.01813 1.70018 1.37701 1.24118 1.24050 0.85473 0.78111 0.78585 0.79246 1.19406 1.20683 1.20382 1.61959 1.10680 1.52904 1.01460 1.22196 0.87515 0.99391 1.01576 1.20323 1.01462 0.92393 0.85587 1.21692 0.93841 0.97473 0.99712 1.25491 1.02371 0.95129 0.89605 1.84519 1.38205 1.38488 1.46869 1.22805 0.83518 0.95688 0.93871 1.21598 1.03563 1.01224 1.02552 1.21024 1.01530 0.96358 0.93013 1.20314 0.95217 0.98231 1.03386 1.26518 1.02658 1.04885 0.98856 1.84819 1.17058 1.25906 1.28970 1.70696 1.31659 1.10329 1.09143 0.95162 0.91796 0.95716 0.92863 0.91932 0.92288 0.95917 0.90455 0.92328 0.73024 0.82165 0.80106 0.77862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.26 8.76 71.98 0.63 -5.63 16 2 C 0.22 11.49 2.06 44.17 0.09 11.58 16 3 H -0.03 -1.49 8.14 -2.38 -0.02 -1.51 16 4 C -0.52 -29.23 7.88 25.60 0.20 -29.02 16 5 H 0.06 3.22 6.40 -2.91 -0.02 3.20 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.35 11.32 21.45 0.24 -53.11 16 8 Si 0.96 44.37 29.54 68.60 2.03 46.40 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.54 -24.56 4.61 -906.03 -4.18 -28.74 16 13 C 0.04 1.64 9.04 127.69 1.15 2.80 16 14 C 0.13 5.00 5.32 85.56 0.46 5.46 16 15 C -0.01 -0.21 5.84 41.33 0.24 0.04 16 16 C -0.05 -1.49 11.04 66.96 0.74 -0.75 16 17 O -0.19 -5.55 10.79 -10.78 -0.12 -5.66 16 18 C 0.25 7.81 8.08 87.04 0.70 8.52 16 19 C -0.17 -4.40 6.46 24.09 0.16 -4.25 16 20 C -0.08 -1.55 10.15 21.67 0.22 -1.33 16 21 C -0.14 -1.85 10.15 21.12 0.21 -1.63 16 22 C -0.19 -2.59 11.21 66.79 0.75 -1.84 16 23 S 0.17 3.74 23.30 -56.49 -1.32 2.43 16 24 N -0.49 -18.30 11.33 -293.48 -3.33 -21.63 16 25 H 0.03 1.38 6.20 -2.39 -0.01 1.36 16 26 H 0.06 3.56 6.07 -2.39 -0.01 3.55 16 27 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 29 H 0.06 2.17 6.54 -2.39 -0.02 2.15 16 30 H 0.06 2.56 6.10 -2.38 -0.01 2.55 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 3.17 5.83 -2.39 -0.01 3.15 16 33 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 34 H 0.25 4.59 8.06 -2.91 -0.02 4.57 16 35 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 37 H 0.20 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -69.55 323.75 0.42 -69.13 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.09 Total: 6.09 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 6.00 Total: -14.91 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -7.26 Total: -103.47 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.12 Total: -5.66 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -1.32 Total: 2.43 kcal Total: -69.55 0.42 -69.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161731995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.230 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds