Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 N 1.30340 * 125.45297 * 90.02532 * 15 14 12 17 17 C 1.34131 * 108.93847 * 179.97438 * 16 15 14 18 18 C 1.36061 * 107.49211 * 359.97438 * 17 16 15 19 19 C 1.47216 * 126.60402 * 180.02562 * 18 17 16 20 20 C 1.35056 * 125.28492 * 359.69741 * 19 18 17 21 21 C 1.37938 * 114.64764 * 179.78939 * 20 19 18 22 22 C 1.33624 * 115.08952 * 0.50776 * 21 20 19 23 23 S 1.75849 * 109.80195 * 359.72297 * 22 21 20 24 24 O 1.34096 * 125.46263 * 269.72223 * 15 14 12 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 30 30 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 31 31 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 32 32 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 33 33 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 34 34 H 1.08007 * 126.25199 * 179.97438 * 17 16 15 35 35 H 1.07995 * 122.67865 * 359.97438 * 20 19 18 36 36 H 1.07994 * 122.45457 * 180.20756 * 21 20 19 37 37 H 1.08005 * 125.09418 * 179.75244 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 7 1.0707 -1.8032 -4.1133 17 6 1.6729 -2.3690 -5.1699 18 6 2.8848 -1.7689 -5.3196 19 6 3.8910 -2.0684 -6.3517 20 6 3.7631 -3.0032 -7.3180 21 6 4.8405 -3.0966 -8.1742 22 6 5.8473 -2.2582 -7.9116 23 16 5.4497 -1.2693 -6.5130 24 8 2.9848 -0.8417 -4.3412 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9026 -0.5284 4.4375 29 1 3.8029 -1.3533 -0.3067 30 1 3.8209 -1.3110 -2.0862 31 1 3.9187 0.2050 -1.1591 32 1 0.4722 0.1323 -2.3564 33 1 2.0519 0.9345 -2.5281 34 1 1.2694 -3.1569 -5.7887 35 1 2.8861 -3.6259 -7.4145 36 1 4.8703 -3.7992 -8.9938 37 1 6.7672 -2.1968 -8.4744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161916916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = 79.925767 kcal Electronic energy + Delta-G solvation = -20431.272943 eV Core-core repulsion = 17303.076689 eV Total energy + Delta-G solvation = -3128.196254 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.20133 -38.07731 -37.41294 -34.69932 -33.03895 -31.97221 -30.37164 -29.00319 -26.84485 -24.89683 -24.44423 -23.79659 -22.40570 -21.14294 -19.65619 -19.31967 -18.36459 -16.98664 -16.71774 -16.29025 -15.78853 -15.43967 -14.41901 -14.32734 -14.03857 -13.83787 -13.37163 -13.31481 -13.01767 -12.93192 -12.61839 -12.41603 -12.23007 -11.92623 -11.37117 -11.16563 -11.09794 -10.94796 -10.67612 -10.62796 -10.43941 -10.18018 -9.98899 -9.54602 -9.11965 -8.82670 -8.61002 -8.08666 -7.57051 -6.10994 -4.10803 0.22324 1.21595 1.65509 1.65950 2.45107 2.54787 2.87468 3.24357 3.32648 3.35959 4.08223 4.35451 4.58930 4.72957 4.76874 4.94317 5.01889 5.19308 5.21237 5.46447 5.51433 5.63296 5.76999 5.89369 5.93713 5.96583 6.11168 6.17387 6.28200 6.34051 6.37823 6.48822 6.70573 6.81497 7.17654 7.45714 7.75474 7.80471 7.90275 8.55971 8.94846 9.49330 11.01548 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.003281 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.202021 B = 8530.751153 C = 8878.802710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.185 3.815 3 H 0.004 0.996 4 C -0.509 4.509 5 H 0.084 0.916 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.519 5.519 13 C 0.034 3.966 14 C 0.135 3.865 15 C 0.234 3.766 16 N -0.469 5.469 17 C 0.001 3.999 18 C -0.004 4.004 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.218 4.218 23 S 0.143 5.857 24 O -0.198 6.198 25 H 0.031 0.969 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.265 0.735 29 H 0.089 0.911 30 H 0.043 0.957 31 H 0.020 0.980 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.186 0.814 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.430 -0.746 -23.211 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.078 3.922 3 H 0.021 0.979 4 C -0.547 4.547 5 H 0.102 0.898 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.245 5.245 13 C -0.114 4.114 14 C 0.006 3.994 15 C 0.028 3.972 16 N -0.197 5.197 17 C -0.142 4.142 18 C -0.059 4.059 19 C -0.222 4.222 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.355 4.355 23 S 0.409 5.591 24 O -0.085 6.085 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.138 0.862 33 H 0.074 0.926 34 H 0.203 0.797 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.491 -0.153 -21.950 22.405 hybrid contribution -0.271 0.496 -0.890 1.054 sum 4.220 0.343 -22.840 23.229 Atomic orbital electron populations 1.22264 0.98156 1.01895 0.98410 1.19750 0.91736 0.92727 0.87946 0.97885 1.20924 1.32291 1.13760 0.87683 0.89774 1.24907 0.95753 0.96650 0.95719 1.69874 1.45480 1.40180 0.97925 0.86883 0.80863 0.83670 0.76941 1.20358 1.22427 1.19359 1.61986 1.10666 1.51676 1.00175 1.22332 0.87196 0.99850 1.02059 1.20713 1.03189 0.91419 0.84052 1.26556 0.79319 0.96560 0.94780 1.70421 1.31641 1.08412 1.09186 1.23372 0.91335 1.02212 0.97276 1.20129 0.97009 0.95709 0.93028 1.21534 0.97465 1.03953 0.99201 1.20224 1.01009 0.99140 0.94701 1.20009 0.93111 1.01378 1.01557 1.25843 1.04380 1.02671 1.02558 1.84588 1.10061 1.37886 1.26528 1.84516 1.40777 1.48410 1.34813 0.95051 0.93708 0.91546 0.92501 0.89241 0.93858 0.96147 0.86227 0.92581 0.79729 0.83547 0.83642 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.47 37.16 0.31 -2.89 16 2 C 0.18 4.28 1.65 -68.86 -0.11 4.16 16 3 H 0.00 0.09 7.20 -51.93 -0.37 -0.29 16 4 C -0.51 -13.95 8.51 -34.44 -0.29 -14.24 16 5 H 0.08 2.52 6.64 -52.49 -0.35 2.17 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.89 21.41 24.37 -169.99 -4.14 17.27 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.14 16 10 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.17 6.53 56.52 0.37 -5.80 16 12 N -0.52 -10.80 4.61 -237.72 -1.10 -11.90 16 13 C 0.03 0.67 9.07 60.07 0.54 1.21 16 14 C 0.14 2.34 5.40 -4.97 -0.03 2.31 16 15 C 0.23 4.02 6.90 -12.91 -0.09 3.93 16 16 N -0.47 -8.05 11.27 -10.73 -0.12 -8.17 16 17 C 0.00 0.02 11.53 -17.33 -0.20 -0.18 16 18 C 0.00 -0.06 7.28 -36.72 -0.27 -0.32 16 19 C -0.10 -1.23 6.43 -37.07 -0.24 -1.47 16 20 C -0.12 -1.12 9.85 -40.82 -0.40 -1.52 16 21 C -0.13 -1.02 10.16 -41.31 -0.42 -1.44 16 22 C -0.22 -1.74 11.22 29.12 0.33 -1.42 16 23 S 0.14 1.51 23.31 -107.50 -2.51 -1.00 16 24 O -0.20 -3.23 10.08 3.84 0.04 -3.19 16 25 H 0.03 0.56 6.20 -51.93 -0.32 0.24 16 26 H 0.04 0.99 3.27 -51.93 -0.17 0.82 16 27 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.95 6.23 -51.93 -0.32 1.62 16 30 H 0.04 0.80 6.61 -51.93 -0.34 0.46 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.12 1.96 5.83 -51.93 -0.30 1.66 16 33 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 34 H 0.19 1.91 7.84 -52.48 -0.41 1.50 16 35 H 0.15 1.06 7.79 -52.49 -0.41 0.65 16 36 H 0.15 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.17 0.89 8.06 -52.48 -0.42 0.47 16 LS Contribution 316.46 15.07 4.77 4.77 Total: -1.00 -31.33 316.46 -7.54 -38.87 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.30 Total: -0.52 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -0.96 Total: -9.94 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.44 Total: -46.26 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.51 Total: -1.00 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.33 -7.54 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161916916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.796 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds