Wall clock time and date at job start Tue Mar 31 2020 06:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46904 * 110.99963 * 183.95369 * 12 2 1 14 14 C 1.46905 * 110.99800 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47326 * 189.99540 * 14 12 2 16 16 N 1.30340 * 125.45297 * 90.02532 * 15 14 12 17 17 C 1.34131 * 108.93847 * 179.97438 * 16 15 14 18 18 C 1.36061 * 107.49211 * 359.97438 * 17 16 15 19 19 C 1.47216 * 126.60402 * 180.02562 * 18 17 16 20 20 C 1.35056 * 125.28492 * 359.69741 * 19 18 17 21 21 C 1.37938 * 114.64764 * 179.78939 * 20 19 18 22 22 C 1.33624 * 115.08952 * 0.50776 * 21 20 19 23 23 S 1.75849 * 109.80195 * 359.72297 * 22 21 20 24 24 O 1.34096 * 125.46263 * 269.72223 * 15 14 12 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46991 * 60.00787 * 13 12 2 30 30 H 1.08998 * 109.46942 * 180.02562 * 13 12 2 31 31 H 1.08998 * 109.47155 * 300.00314 * 13 12 2 32 32 H 1.08997 * 109.47089 * 310.00066 * 14 12 2 33 33 H 1.09006 * 109.47115 * 69.99884 * 14 12 2 34 34 H 1.08007 * 126.25199 * 179.97438 * 17 16 15 35 35 H 1.07995 * 122.67865 * 359.97438 * 20 19 18 36 36 H 1.07994 * 122.45457 * 180.20756 * 21 20 19 37 37 H 1.08005 * 125.09418 * 179.75244 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 3.4851 -0.7946 -1.1870 14 6 1.5486 -0.0265 -2.4211 15 6 1.8580 -0.8912 -3.6159 16 7 1.0707 -1.8032 -4.1133 17 6 1.6729 -2.3690 -5.1699 18 6 2.8848 -1.7689 -5.3196 19 6 3.8910 -2.0684 -6.3517 20 6 3.7631 -3.0032 -7.3180 21 6 4.8405 -3.0966 -8.1742 22 6 5.8473 -2.2582 -7.9116 23 16 5.4497 -1.2693 -6.5130 24 8 2.9848 -0.8417 -4.3412 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.9026 -0.5284 4.4375 29 1 3.8029 -1.3533 -0.3067 30 1 3.8209 -1.3110 -2.0862 31 1 3.9187 0.2050 -1.1591 32 1 0.4722 0.1323 -2.3564 33 1 2.0519 0.9345 -2.5281 34 1 1.2694 -3.1569 -5.7887 35 1 2.8861 -3.6259 -7.4145 36 1 4.8703 -3.7992 -8.9938 37 1 6.7672 -2.1968 -8.4744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161916916.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:09 Heat of formation + Delta-G solvation = 56.519515 kcal Electronic energy + Delta-G solvation = -20432.287914 eV Core-core repulsion = 17303.076689 eV Total energy + Delta-G solvation = -3129.211225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.35925 -39.12651 -38.72117 -35.88935 -34.92898 -33.19374 -32.04663 -30.26131 -28.10766 -26.59556 -25.68664 -25.12015 -23.43123 -22.46317 -21.33970 -20.10191 -19.27040 -18.90855 -17.97373 -17.52190 -17.10543 -16.58219 -16.04797 -15.73185 -15.40571 -15.18643 -14.72861 -14.42803 -14.19828 -14.11594 -13.85827 -13.65525 -13.57882 -13.16719 -12.89391 -12.73811 -12.58872 -12.46483 -12.30528 -12.04721 -11.85742 -11.60041 -11.42998 -11.11397 -10.84834 -10.72743 -9.58858 -9.23940 -8.99421 -8.27577 -6.32231 -0.62542 0.45121 0.66818 0.95668 1.33934 1.37979 1.42400 1.48297 1.55438 1.92905 2.33272 2.91102 3.05512 3.20889 3.61533 3.90492 4.15184 4.19046 4.23109 4.30072 4.35869 4.48930 4.52967 4.61758 4.63298 4.74752 4.77417 4.82858 5.00138 5.06616 5.10100 5.19031 5.25019 5.39741 5.44650 5.62078 5.90375 6.15425 6.56010 6.65187 6.73757 7.32160 8.88767 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.034636 B = 0.003281 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.202021 B = 8530.751153 C = 8878.802710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.188 3.812 3 H 0.006 0.994 4 C -0.511 4.511 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.264 1.264 10 H -0.300 1.300 11 H -0.244 1.244 12 N -0.536 5.536 13 C 0.044 3.956 14 C 0.140 3.860 15 C 0.209 3.791 16 N -0.486 5.486 17 C -0.015 4.015 18 C 0.004 3.996 19 C -0.148 4.148 20 C -0.096 4.096 21 C -0.137 4.137 22 C -0.195 4.195 23 S 0.099 5.901 24 O -0.209 6.209 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.266 0.734 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.028 0.972 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.219 0.781 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.872 -0.270 -26.555 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.081 3.919 3 H 0.024 0.976 4 C -0.550 4.550 5 H 0.059 0.941 6 C -0.184 4.184 7 N -0.589 5.589 8 Si 0.776 3.224 9 H -0.190 1.190 10 H -0.228 1.228 11 H -0.167 1.167 12 N -0.262 5.262 13 C -0.104 4.104 14 C 0.012 3.988 15 C 0.003 3.997 16 N -0.215 5.215 17 C -0.157 4.157 18 C -0.050 4.050 19 C -0.265 4.265 20 C -0.128 4.128 21 C -0.166 4.166 22 C -0.331 4.331 23 S 0.365 5.635 24 O -0.097 6.097 25 H 0.089 0.911 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.235 0.765 35 H 0.187 0.813 36 H 0.198 0.802 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.932 0.325 -25.328 25.633 hybrid contribution 0.088 0.167 -0.083 0.207 sum 4.020 0.492 -25.411 25.732 Atomic orbital electron populations 1.22172 0.96325 1.01786 1.00091 1.19577 0.93066 0.92102 0.87132 0.97610 1.21174 1.31278 1.12525 0.89981 0.94145 1.25785 0.97324 1.00111 0.95185 1.70036 1.47669 1.42530 0.98618 0.85851 0.79274 0.79817 0.77472 1.18966 1.22799 1.16729 1.61836 1.10804 1.52573 1.00984 1.22155 0.87308 0.99906 1.01003 1.20684 1.03808 0.91894 0.82442 1.26331 0.80072 0.97710 0.95613 1.70362 1.32403 1.08540 1.10195 1.23861 0.91377 1.03191 0.97244 1.20670 0.97585 0.94354 0.92414 1.21616 0.97874 1.06508 1.00530 1.20691 1.01859 0.97244 0.92983 1.20405 0.92227 1.01863 1.02108 1.26267 1.05362 1.00824 1.00613 1.84737 1.10426 1.39454 1.28871 1.84488 1.40635 1.49176 1.35403 0.91077 0.94158 0.92680 0.92471 0.92341 0.92838 0.95307 0.85181 0.90834 0.76493 0.81320 0.80190 0.78494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 8.47 71.98 0.61 -5.37 16 2 C 0.19 8.62 1.65 44.17 0.07 8.70 16 3 H 0.01 0.29 7.20 -2.39 -0.02 0.27 16 4 C -0.51 -28.96 8.51 25.60 0.22 -28.74 16 5 H 0.04 2.58 6.64 -2.91 -0.02 2.56 16 6 C 0.01 0.77 5.45 84.66 0.46 1.23 16 7 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 8 Si 0.95 43.83 24.37 68.60 1.67 45.50 16 9 H -0.26 -11.57 6.87 99.48 0.68 -10.89 16 10 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.24 -10.20 6.53 99.48 0.65 -9.55 16 12 N -0.54 -22.33 4.61 -906.01 -4.18 -26.51 16 13 C 0.04 1.82 9.07 127.69 1.16 2.97 16 14 C 0.14 4.69 5.40 85.56 0.46 5.15 16 15 C 0.21 7.06 6.90 88.33 0.61 7.67 16 16 N -0.49 -16.34 11.27 -302.55 -3.41 -19.74 16 17 C -0.01 -0.39 11.53 83.84 0.97 0.57 16 18 C 0.00 0.11 7.28 24.12 0.18 0.29 16 19 C -0.15 -3.30 6.43 23.90 0.15 -3.15 16 20 C -0.10 -1.49 9.85 21.47 0.21 -1.28 16 21 C -0.14 -1.58 10.16 21.15 0.21 -1.36 16 22 C -0.19 -2.45 11.22 66.77 0.75 -1.70 16 23 S 0.10 1.98 23.31 -56.49 -1.32 0.67 16 24 O -0.21 -6.82 10.08 -9.18 -0.09 -6.91 16 25 H 0.07 2.32 6.20 -2.39 -0.01 2.30 16 26 H 0.04 1.67 3.27 -2.39 -0.01 1.66 16 27 H 0.05 2.34 8.14 -2.38 -0.02 2.33 16 28 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 29 H 0.06 2.71 6.23 -2.39 -0.01 2.70 16 30 H 0.05 2.03 6.61 -2.39 -0.02 2.02 16 31 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.13 3.99 5.83 -2.39 -0.01 3.98 16 33 H 0.07 2.19 8.12 -2.38 -0.02 2.17 16 34 H 0.22 3.98 7.84 -2.91 -0.02 3.96 16 35 H 0.17 1.77 7.79 -2.91 -0.02 1.75 16 36 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -70.93 316.46 0.05 -70.88 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.01 Total: 9.99 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 6.06 Total: -15.02 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -7.29 Total: -105.11 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.09 Total: -6.91 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.67 Total: 45.50 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.32 Total: 0.67 kcal Total: -70.93 0.05 -70.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161916916.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.404 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds