Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.50697 * 109.47332 * 169.99613 * 14 12 2 16 16 N 1.30344 * 125.45434 * 90.02590 * 15 14 12 17 17 C 1.34132 * 108.94392 * 179.97438 * 16 15 14 18 18 C 1.36064 * 107.48681 * 0.02562 * 17 16 15 19 19 C 1.47225 * 126.60425 * 180.02562 * 18 17 16 20 20 C 1.35052 * 125.28521 * 359.70041 * 19 18 17 21 21 C 1.37925 * 114.65546 * 179.79240 * 20 19 18 22 22 C 1.33625 * 115.08560 * 0.49792 * 21 20 19 23 23 S 1.75850 * 109.80100 * 359.73046 * 22 21 20 24 24 O 1.34101 * 125.46253 * 269.72339 * 15 14 12 25 25 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 26 26 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 27 27 H 1.09008 * 109.46974 * 306.76386 * 1 2 3 28 28 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 30 30 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 31 31 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 32 32 H 1.08999 * 109.47541 * 290.00020 * 14 12 2 33 33 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 34 34 H 1.07992 * 126.26016 * 179.97438 * 17 16 15 35 35 H 1.08005 * 122.67864 * 359.97438 * 20 19 18 36 36 H 1.08001 * 122.46570 * 180.20904 * 21 20 19 37 37 H 1.07997 * 125.09819 * 179.75447 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6159 16 7 2.9552 -0.8461 4.3180 17 6 2.8806 -1.7555 5.3012 18 6 1.6783 -2.3824 5.1879 19 6 1.1625 -3.4550 6.0544 20 6 1.8180 -3.9913 7.1063 21 6 1.1269 -4.9833 7.7700 22 6 -0.0775 -5.2688 7.2665 23 16 -0.4003 -4.2422 5.8757 24 8 1.0460 -1.8260 4.1306 25 1 -0.3633 -1.0205 0.1212 26 1 -0.3634 0.4053 -0.9442 27 1 -0.3633 0.6151 0.8233 28 1 2.9524 -0.1049 -4.2507 29 1 3.9187 0.2052 1.1591 30 1 3.8209 -1.3116 2.0859 31 1 3.8029 -1.3530 0.3067 32 1 2.0519 0.9347 2.5280 33 1 0.4722 0.1324 2.3564 34 1 3.6369 -1.9544 6.0459 35 1 2.8038 -3.6672 7.4059 36 1 1.5313 -5.4953 8.6307 37 1 -0.7517 -6.0173 7.6556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161917011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = 70.354482 kcal Electronic energy + Delta-G solvation = -20418.677988 eV Core-core repulsion = 17290.066692 eV Total energy + Delta-G solvation = -3128.611296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.16815 -38.04437 -37.32259 -34.67610 -32.93018 -31.94080 -30.29905 -28.86681 -26.82610 -24.97841 -24.54067 -23.45805 -22.42483 -21.08901 -19.45835 -19.30508 -18.32878 -17.12816 -16.67076 -16.31473 -15.79514 -14.96290 -14.49477 -14.29127 -14.13281 -13.71376 -13.32614 -13.29093 -12.97915 -12.75618 -12.52947 -12.38520 -12.27416 -11.52851 -11.23886 -11.12937 -11.06584 -11.02779 -10.74632 -10.52495 -10.34117 -10.33219 -9.95273 -9.80449 -9.18390 -8.78937 -8.63634 -8.06437 -7.50719 -6.13652 -4.13207 0.25620 1.25417 1.68765 1.69856 2.46688 2.59424 2.86895 3.22933 3.31996 3.32395 4.09318 4.34714 4.61455 4.76765 4.82349 4.98117 5.05073 5.21324 5.23380 5.46747 5.57614 5.67377 5.79250 5.93490 5.99412 6.10016 6.14116 6.25741 6.29890 6.41955 6.49299 6.62234 6.78697 6.99007 7.20785 7.51740 7.78826 7.83697 7.95280 8.56544 8.96692 9.48470 10.99057 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.003356 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.612738 B = 8341.936246 C = 8630.256090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.181 3.819 3 H 0.006 0.994 4 C -0.503 4.503 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.528 5.528 13 C 0.037 3.963 14 C 0.132 3.868 15 C 0.239 3.761 16 N -0.484 5.484 17 C -0.001 4.001 18 C -0.002 4.002 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.131 4.131 22 C -0.220 4.220 23 S 0.148 5.852 24 O -0.188 6.188 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.265 0.735 29 H 0.017 0.983 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.185 0.815 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.172 -5.007 21.962 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.076 3.924 3 H 0.024 0.976 4 C -0.541 4.541 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.699 3.301 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.254 5.254 13 C -0.111 4.111 14 C 0.003 3.997 15 C 0.033 3.967 16 N -0.212 5.212 17 C -0.144 4.144 18 C -0.057 4.057 19 C -0.222 4.222 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.356 4.356 23 S 0.415 5.585 24 O -0.074 6.074 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.134 -4.927 20.582 21.778 hybrid contribution 1.030 1.077 1.084 1.842 sum -4.104 -3.850 21.666 22.385 Atomic orbital electron populations 1.22045 0.97672 1.00672 0.99188 1.19788 0.92356 0.92307 0.87970 0.97638 1.20824 1.43489 0.95974 0.93815 0.89989 1.24987 0.94501 0.98027 0.95394 1.69879 1.45550 1.35783 1.01961 0.86952 0.79124 0.86717 0.77346 1.20189 1.21324 1.18988 1.62242 1.11283 1.51805 1.00072 1.22250 0.86770 0.99829 1.02239 1.20676 1.02860 0.91637 0.84564 1.26593 0.84171 0.89429 0.96547 1.70440 1.22177 1.22235 1.06376 1.23307 0.96443 0.95111 0.99512 1.20148 0.94281 0.99507 0.91811 1.21540 0.99805 1.00804 1.00082 1.20206 1.01719 0.98065 0.95159 1.19997 0.94578 0.99327 1.02229 1.25856 1.01963 1.06240 1.01510 1.84631 1.14950 1.30623 1.28324 1.84522 1.44118 1.42592 1.36216 0.92506 0.92744 0.95919 0.92479 0.96473 0.93084 0.89515 0.90965 0.87895 0.79810 0.83626 0.83694 0.81472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.76 37.15 0.33 -2.50 16 2 C 0.18 4.16 1.70 -68.87 -0.12 4.04 16 3 H 0.01 0.14 5.35 -51.93 -0.28 -0.14 16 4 C -0.50 -13.65 7.46 -34.44 -0.26 -13.90 16 5 H 0.08 2.48 8.04 -52.49 -0.42 2.06 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 8 Si 0.87 20.88 26.95 -169.99 -4.58 16.30 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.03 6.88 56.52 0.39 -5.65 16 12 N -0.53 -11.05 4.61 -237.73 -1.10 -12.15 16 13 C 0.04 0.77 9.08 60.07 0.55 1.32 16 14 C 0.13 2.30 5.40 -4.98 -0.03 2.27 16 15 C 0.24 4.13 6.97 -12.91 -0.09 4.04 16 16 N -0.48 -8.12 10.40 -10.73 -0.11 -8.23 16 17 C 0.00 -0.01 11.53 -17.33 -0.20 -0.21 16 18 C 0.00 -0.03 7.28 -36.71 -0.27 -0.30 16 19 C -0.10 -1.27 6.43 -37.06 -0.24 -1.51 16 20 C -0.12 -1.15 9.85 -40.83 -0.40 -1.55 16 21 C -0.13 -1.06 10.16 -41.31 -0.42 -1.48 16 22 C -0.22 -1.81 11.22 29.12 0.33 -1.49 16 23 S 0.15 1.62 23.31 -107.50 -2.51 -0.89 16 24 O -0.19 -3.19 10.80 3.80 0.04 -3.15 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 27 H 0.02 0.39 6.57 -51.92 -0.34 0.05 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 1.00 6.52 -51.93 -0.34 0.66 16 31 H 0.09 1.98 6.96 -51.93 -0.36 1.62 16 32 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 33 H 0.10 1.64 5.97 -51.93 -0.31 1.33 16 34 H 0.18 1.89 7.84 -52.49 -0.41 1.48 16 35 H 0.15 1.08 7.79 -52.48 -0.41 0.67 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -30.76 324.45 -8.06 -38.83 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.55 Total: -0.45 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -0.92 Total: -9.33 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: -0.44 Total: -46.21 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.04 Total: -3.15 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.58 Total: 16.30 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.51 Total: -0.89 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.76 -8.06 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161917011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.182 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds