Wall clock time and date at job start Tue Mar 31 2020 06:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47184 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99798 * 2 1 3 5 5 H 1.08002 * 120.00100 * 274.89981 * 4 2 1 6 6 C 1.37880 * 119.99941 * 94.90451 * 4 2 1 7 7 N 1.31515 * 120.00086 * 183.89537 * 6 4 2 8 8 Si 1.86799 * 120.00148 * 3.88538 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.42591 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.42885 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.43060 * 8 6 4 12 12 N 1.46900 * 109.47308 * 119.99936 * 2 1 3 13 13 C 1.46905 * 111.00101 * 176.04915 * 12 2 1 14 14 C 1.46902 * 110.99962 * 299.99666 * 12 2 1 15 15 C 1.50697 * 109.47332 * 169.99613 * 14 12 2 16 16 N 1.30344 * 125.45434 * 90.02590 * 15 14 12 17 17 C 1.34132 * 108.94392 * 179.97438 * 16 15 14 18 18 C 1.36064 * 107.48681 * 0.02562 * 17 16 15 19 19 C 1.47225 * 126.60425 * 180.02562 * 18 17 16 20 20 C 1.35052 * 125.28521 * 359.70041 * 19 18 17 21 21 C 1.37925 * 114.65546 * 179.79240 * 20 19 18 22 22 C 1.33625 * 115.08560 * 0.49792 * 21 20 19 23 23 S 1.75850 * 109.80100 * 359.73046 * 22 21 20 24 24 O 1.34101 * 125.46253 * 269.72339 * 15 14 12 25 25 H 1.09000 * 109.47001 * 186.77157 * 1 2 3 26 26 H 1.08991 * 109.47541 * 66.76836 * 1 2 3 27 27 H 1.09008 * 109.46974 * 306.76386 * 1 2 3 28 28 H 0.96996 * 120.00229 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47366 * 59.99548 * 13 12 2 30 30 H 1.09000 * 109.46890 * 180.02562 * 13 12 2 31 31 H 1.08997 * 109.46501 * 299.99899 * 13 12 2 32 32 H 1.08999 * 109.47541 * 290.00020 * 14 12 2 33 33 H 1.09005 * 109.46858 * 50.00531 * 14 12 2 34 34 H 1.07992 * 126.26016 * 179.97438 * 17 16 15 35 35 H 1.08005 * 122.67864 * 359.97438 * 20 19 18 36 36 H 1.08001 * 122.46570 * 180.20904 * 21 20 19 37 37 H 1.07997 * 125.09819 * 179.75447 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1370 -1.7854 -1.2284 6 6 2.3584 0.0119 -2.3587 7 7 2.7234 -0.6130 -3.4568 8 14 2.2813 1.8780 -2.3277 9 1 3.5499 2.4166 -1.7748 10 1 2.0869 2.3884 -3.7085 11 1 1.1458 2.3124 -1.4749 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7944 1.1870 14 6 1.5487 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6159 16 7 2.9552 -0.8461 4.3180 17 6 2.8806 -1.7555 5.3012 18 6 1.6783 -2.3824 5.1879 19 6 1.1625 -3.4550 6.0544 20 6 1.8180 -3.9913 7.1063 21 6 1.1269 -4.9833 7.7700 22 6 -0.0775 -5.2688 7.2665 23 16 -0.4003 -4.2422 5.8757 24 8 1.0460 -1.8260 4.1306 25 1 -0.3633 -1.0205 0.1212 26 1 -0.3634 0.4053 -0.9442 27 1 -0.3633 0.6151 0.8233 28 1 2.9524 -0.1049 -4.2507 29 1 3.9187 0.2052 1.1591 30 1 3.8209 -1.3116 2.0859 31 1 3.8029 -1.3530 0.3067 32 1 2.0519 0.9347 2.5280 33 1 0.4722 0.1324 2.3564 34 1 3.6369 -1.9544 6.0459 35 1 2.8038 -3.6672 7.4059 36 1 1.5313 -5.4953 8.6307 37 1 -0.7517 -6.0173 7.6556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161917011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:11 Heat of formation + Delta-G solvation = 48.412769 kcal Electronic energy + Delta-G solvation = -20419.629452 eV Core-core repulsion = 17290.066692 eV Total energy + Delta-G solvation = -3129.562760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.34047 -39.05201 -38.70459 -35.89252 -34.81459 -33.18420 -31.91859 -30.16932 -28.12405 -26.70711 -25.67798 -24.87628 -23.45047 -22.39661 -21.17447 -20.10584 -19.28072 -19.09546 -17.93974 -17.51715 -16.74392 -16.48068 -16.13221 -15.72737 -15.36220 -15.15381 -14.55729 -14.44006 -14.18975 -14.10604 -13.87145 -13.60419 -13.18034 -13.15680 -12.90679 -12.71277 -12.58161 -12.50876 -12.10003 -12.07370 -11.84416 -11.79852 -11.61243 -11.16771 -10.83884 -10.75371 -9.58066 -9.21066 -8.97612 -8.28483 -6.32761 -0.60950 0.46588 0.67890 0.97448 1.34661 1.35971 1.45659 1.46372 1.55017 1.93346 2.33554 2.86993 3.07808 3.33566 3.61499 3.92979 4.14726 4.20015 4.27495 4.35019 4.43882 4.51590 4.54670 4.66535 4.72674 4.81149 4.85904 4.89694 5.08000 5.10190 5.17254 5.24187 5.26384 5.43364 5.45800 5.67106 5.99588 6.18835 6.57525 6.63077 6.75197 7.32836 8.88341 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.003356 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.612738 B = 8341.936246 C = 8630.256090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.184 3.816 3 H 0.010 0.990 4 C -0.502 4.502 5 H 0.032 0.968 6 C 0.016 3.984 7 N -0.946 5.946 8 Si 0.936 3.064 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.239 1.239 12 N -0.543 5.543 13 C 0.049 3.951 14 C 0.137 3.863 15 C 0.212 3.788 16 N -0.493 5.493 17 C -0.013 4.013 18 C 0.003 3.997 19 C -0.148 4.148 20 C -0.096 4.096 21 C -0.137 4.137 22 C -0.196 4.196 23 S 0.098 5.902 24 O -0.205 6.205 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.266 0.734 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.219 0.781 35 H 0.170 0.830 36 H 0.181 0.819 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 -4.496 25.407 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.078 3.922 3 H 0.028 0.972 4 C -0.540 4.540 5 H 0.050 0.950 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.759 3.241 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.162 1.162 12 N -0.269 5.269 13 C -0.099 4.099 14 C 0.009 3.991 15 C 0.006 3.994 16 N -0.223 5.223 17 C -0.155 4.155 18 C -0.052 4.052 19 C -0.266 4.266 20 C -0.128 4.128 21 C -0.166 4.166 22 C -0.331 4.331 23 S 0.364 5.636 24 O -0.092 6.092 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.236 0.764 35 H 0.188 0.812 36 H 0.198 0.802 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.561 -4.417 24.056 25.083 hybrid contribution 1.153 0.651 0.231 1.344 sum -4.409 -3.766 24.287 24.970 Atomic orbital electron populations 1.21943 0.95636 1.01102 1.00478 1.19664 0.93811 0.91776 0.86979 0.97213 1.20965 1.43055 0.93965 0.96033 0.94979 1.25830 0.94219 1.03345 0.94767 1.70038 1.47646 1.37953 1.02942 0.85913 0.80175 0.80201 0.77791 1.19552 1.21267 1.16197 1.62038 1.11106 1.52698 1.01061 1.22062 0.87151 0.99599 1.01080 1.20643 1.03718 0.91863 0.82924 1.26379 0.84924 0.90693 0.97431 1.70386 1.21971 1.22949 1.06979 1.23821 0.97216 0.94669 0.99827 1.20707 0.94281 0.99276 0.90908 1.21631 1.00950 1.02192 1.01797 1.20681 1.02230 0.96662 0.93199 1.20405 0.94250 0.98928 1.03025 1.26271 1.02401 1.05211 0.99246 1.84799 1.15595 1.32302 1.30881 1.84493 1.44725 1.42807 1.37159 0.93273 0.93334 0.92018 0.92447 0.96016 0.92078 0.92803 0.89666 0.86413 0.76404 0.81249 0.80156 0.78507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.76 71.98 0.63 -4.68 16 2 C 0.18 8.37 1.70 44.17 0.08 8.45 16 3 H 0.01 0.46 5.35 -2.39 -0.01 0.44 16 4 C -0.50 -28.22 7.46 25.60 0.19 -28.03 16 5 H 0.03 2.07 8.04 -2.91 -0.02 2.05 16 6 C 0.02 0.93 5.47 84.66 0.46 1.39 16 7 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 8 Si 0.94 42.89 26.95 68.60 1.85 44.74 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.24 -9.87 6.88 99.48 0.68 -9.19 16 12 N -0.54 -22.78 4.61 -906.04 -4.18 -26.96 16 13 C 0.05 2.09 9.08 127.69 1.16 3.25 16 14 C 0.14 4.62 5.40 85.56 0.46 5.08 16 15 C 0.21 7.20 6.97 88.33 0.62 7.81 16 16 N -0.49 -16.08 10.40 -302.55 -3.15 -19.23 16 17 C -0.01 -0.35 11.53 83.84 0.97 0.62 16 18 C 0.00 0.08 7.28 24.13 0.18 0.25 16 19 C -0.15 -3.41 6.43 23.90 0.15 -3.25 16 20 C -0.10 -1.52 9.85 21.46 0.21 -1.31 16 21 C -0.14 -1.64 10.16 21.15 0.21 -1.42 16 22 C -0.20 -2.58 11.22 66.77 0.75 -1.83 16 23 S 0.10 2.06 23.31 -56.49 -1.32 0.74 16 24 O -0.20 -6.95 10.80 -9.30 -0.10 -7.05 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 27 H 0.06 1.96 6.57 -2.38 -0.02 1.95 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 2.42 6.52 -2.39 -0.02 2.40 16 31 H 0.05 2.58 6.96 -2.39 -0.02 2.57 16 32 H 0.09 2.65 8.12 -2.39 -0.02 2.63 16 33 H 0.12 3.53 5.97 -2.38 -0.01 3.52 16 34 H 0.22 3.88 7.84 -2.91 -0.02 3.86 16 35 H 0.17 1.79 7.79 -2.91 -0.02 1.77 16 36 H 0.18 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -70.17 324.45 0.53 -69.64 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.06 Total: 9.99 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 6.07 Total: -13.67 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -7.03 Total: -104.39 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.10 Total: -7.05 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.85 Total: 44.74 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -70.17 0.53 -69.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161917011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.053 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds