Wall clock time and date at job start Tue Mar 31 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46893 * 111.00189 * 306.04680 * 12 2 1 14 14 C 1.46903 * 110.99939 * 69.99849 * 12 2 1 15 15 C 1.50701 * 109.47044 * 169.99655 * 14 12 2 16 16 C 1.40785 * 126.66632 * 94.71216 * 15 14 12 17 17 C 1.37267 * 103.86379 * 179.85734 * 16 15 14 18 18 C 1.47013 * 126.96843 * 180.12716 * 17 16 15 19 19 C 1.36201 * 125.33604 * 180.02562 * 18 17 16 20 20 C 1.37716 * 114.44297 * 179.83320 * 19 18 17 21 21 C 1.33725 * 115.19113 * 0.45666 * 20 19 18 22 22 S 1.75826 * 109.96639 * 359.75374 * 21 20 19 23 23 O 1.34620 * 106.06464 * 0.40008 * 17 16 15 24 24 N 1.20897 * 111.39904 * 359.72721 * 23 17 16 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47231 * 60.00105 * 13 12 2 30 30 H 1.09001 * 109.47433 * 179.97438 * 13 12 2 31 31 H 1.09003 * 109.47029 * 299.99707 * 13 12 2 32 32 H 1.08999 * 109.47506 * 289.99793 * 14 12 2 33 33 H 1.09002 * 109.47089 * 50.00220 * 14 12 2 34 34 H 1.08001 * 128.06881 * 359.97438 * 16 15 14 35 35 H 1.07997 * 122.77511 * 359.97438 * 19 18 17 36 36 H 1.08000 * 122.39749 * 180.18840 * 20 19 18 37 37 H 1.08007 * 125.01463 * 179.77332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4775 -0.5160 -3.5794 16 6 1.9496 -1.4329 -4.5082 17 6 2.9961 -1.6747 -5.3629 18 6 2.9947 -2.5653 -6.5326 19 6 4.0552 -2.7812 -7.3596 20 6 3.8064 -3.6645 -8.3865 21 6 2.5665 -4.1642 -8.4196 22 16 1.6210 -3.5132 -7.0878 23 8 4.0259 -0.9356 -4.9094 24 7 3.7166 -0.3051 -3.9253 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5282 4.4375 29 1 0.3492 -1.9548 -1.3695 30 1 1.8134 -2.5256 -2.2047 31 1 1.7061 -2.6220 -0.4304 32 1 0.6815 0.1054 -2.6088 33 1 2.1025 1.1190 -2.2603 34 1 0.9530 -1.8477 -4.5417 35 1 5.0126 -2.3013 -7.2201 36 1 4.5575 -3.9308 -9.1154 37 1 2.2000 -4.8646 -9.1556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161946607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:49 Heat of formation + Delta-G solvation = 116.430994 kcal Electronic energy + Delta-G solvation = -20415.617053 eV Core-core repulsion = 17289.003785 eV Total energy + Delta-G solvation = -3126.613268 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.76582 -38.01914 -37.72174 -34.30311 -32.87265 -32.30857 -29.80931 -28.81338 -27.38433 -25.34122 -24.87394 -24.00997 -23.00919 -21.11593 -19.56610 -18.92997 -18.19526 -17.50965 -16.62700 -16.58768 -15.71487 -15.39207 -14.62776 -14.33756 -14.12280 -13.51823 -13.48480 -13.41836 -13.05068 -12.94367 -12.60467 -12.36453 -12.19243 -11.61294 -11.57712 -11.23543 -11.19734 -10.95939 -10.87561 -10.41011 -10.31109 -10.06550 -10.01953 -9.50705 -9.09745 -8.87276 -8.59444 -8.42012 -7.43904 -6.07117 -4.05489 0.13802 1.03948 1.56805 1.68568 2.27342 2.61912 3.16375 3.24133 3.34643 3.37481 4.24148 4.32404 4.38323 4.69212 4.80746 5.00863 5.14914 5.17378 5.22948 5.25420 5.46977 5.64318 5.75453 5.84971 5.93582 6.01045 6.04281 6.10290 6.14773 6.22626 6.25794 6.47710 6.64586 6.83283 7.12698 7.58669 7.84825 7.98083 8.37567 8.63240 9.01041 9.54241 11.06079 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.003171 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.731645 B = 8828.516407 C = 8975.001821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.182 3.818 3 H 0.041 0.959 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.517 5.517 13 C 0.030 3.970 14 C 0.123 3.877 15 C 0.047 3.953 16 C -0.208 4.208 17 C 0.024 3.976 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.215 4.215 22 S 0.165 5.835 23 O 0.113 5.887 24 N -0.341 5.341 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.028 0.972 28 H 0.264 0.736 29 H 0.022 0.978 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.095 -4.965 -25.067 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.075 3.925 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.241 5.241 13 C -0.118 4.118 14 C -0.006 4.006 15 C -0.111 4.111 16 C -0.230 4.230 17 C -0.041 4.041 18 C -0.245 4.245 19 C -0.141 4.141 20 C -0.163 4.163 21 C -0.351 4.351 22 S 0.430 5.570 23 O 0.043 5.957 24 N -0.043 5.043 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.187 0.813 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.099 -4.444 -23.799 24.301 hybrid contribution -0.798 0.596 -0.454 1.094 sum -2.897 -3.848 -24.253 24.727 Atomic orbital electron populations 1.22849 1.01543 1.01242 0.99039 1.19819 0.88796 0.95329 0.88557 0.94108 1.20898 1.31544 1.13845 0.87652 0.89993 1.24908 0.95912 0.96582 0.95777 1.69877 1.45692 1.40296 0.97872 0.86891 0.80488 0.83936 0.77032 1.20746 1.22364 1.19321 1.62158 1.58876 1.02431 1.00588 1.22344 0.96304 0.91348 1.01799 1.20435 0.95857 0.97549 0.86795 1.23366 0.90557 0.98315 0.98908 1.22609 1.01074 1.02913 0.96452 1.21271 0.88615 0.97899 0.96335 1.21854 0.99346 1.04546 0.98788 1.20740 0.99439 0.99531 0.94438 1.20029 0.97134 0.98967 1.00169 1.25905 0.98161 1.07373 1.03701 1.84268 1.12026 1.38601 1.22127 1.85007 1.34980 1.43251 1.32479 1.73857 1.16273 1.14477 0.99653 0.92225 0.93492 0.95282 0.92600 0.95963 0.93628 0.90058 0.92998 0.89423 0.81289 0.83273 0.83641 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.99 7.92 37.16 0.29 -3.70 16 2 C 0.18 4.30 1.90 -68.86 -0.13 4.17 16 3 H 0.04 1.00 6.99 -51.93 -0.36 0.64 16 4 C -0.50 -14.06 8.55 -34.44 -0.29 -14.36 16 5 H 0.08 2.53 7.35 -52.48 -0.39 2.15 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 8 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 9 H -0.28 -6.71 6.87 56.52 0.39 -6.32 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.95 16 12 N -0.52 -10.89 4.69 -237.73 -1.12 -12.01 16 13 C 0.03 0.58 8.63 60.06 0.52 1.10 16 14 C 0.12 2.16 5.12 -4.97 -0.03 2.13 16 15 C 0.05 0.78 6.00 -82.25 -0.49 0.28 16 16 C -0.21 -2.85 9.85 -38.97 -0.38 -3.24 16 17 C 0.02 0.32 7.29 -36.38 -0.27 0.05 16 18 C -0.13 -1.37 6.45 -36.76 -0.24 -1.61 16 19 C -0.11 -1.00 10.17 -40.50 -0.41 -1.42 16 20 C -0.13 -0.96 10.15 -41.36 -0.42 -1.38 16 21 C -0.21 -1.46 11.21 29.15 0.33 -1.13 16 22 S 0.17 1.39 23.12 -107.50 -2.49 -1.09 16 23 O 0.11 1.74 11.23 15.61 0.18 1.92 16 24 N -0.34 -6.02 12.05 33.52 0.40 -5.62 16 25 H 0.06 1.23 6.33 -51.93 -0.33 0.91 16 26 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 27 H 0.03 0.52 6.91 -51.93 -0.36 0.16 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.02 0.39 6.21 -51.93 -0.32 0.07 16 30 H 0.04 0.79 6.34 -51.93 -0.33 0.46 16 31 H 0.08 1.74 6.86 -51.93 -0.36 1.38 16 32 H 0.05 0.81 7.06 -51.93 -0.37 0.45 16 33 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 34 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.17 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 314.40 15.07 4.74 4.74 Total: -1.00 -31.64 314.40 -7.54 -39.18 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.26 Total: -0.88 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -1.62 Total: -17.19 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.06 Total: -44.36 kcal Atomic # 8 Polarization: 1.74 SS G_CDS: 0.18 Total: 1.92 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.64 -7.54 -39.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161946607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.611 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds