Wall clock time and date at job start Tue Mar 31 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31512 * 120.00020 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99603 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47195 * 90.00782 * 8 6 4 10 10 H 1.48502 * 109.46875 * 210.00223 * 8 6 4 11 11 H 1.48493 * 109.47388 * 330.00132 * 8 6 4 12 12 N 1.46899 * 109.47163 * 240.00322 * 2 1 3 13 13 C 1.46893 * 111.00189 * 306.04680 * 12 2 1 14 14 C 1.46903 * 110.99939 * 69.99849 * 12 2 1 15 15 C 1.50701 * 109.47044 * 169.99655 * 14 12 2 16 16 C 1.40785 * 126.66632 * 94.71216 * 15 14 12 17 17 C 1.37267 * 103.86379 * 179.85734 * 16 15 14 18 18 C 1.47013 * 126.96843 * 180.12716 * 17 16 15 19 19 C 1.36201 * 125.33604 * 180.02562 * 18 17 16 20 20 C 1.37716 * 114.44297 * 179.83320 * 19 18 17 21 21 C 1.33725 * 115.19113 * 0.45666 * 20 19 18 22 22 S 1.75826 * 109.96639 * 359.75374 * 21 20 19 23 23 O 1.34620 * 106.06464 * 0.40008 * 17 16 15 24 24 N 1.20897 * 111.39904 * 359.72721 * 23 17 16 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97000 * 119.99684 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47231 * 60.00105 * 13 12 2 30 30 H 1.09001 * 109.47433 * 179.97438 * 13 12 2 31 31 H 1.09003 * 109.47029 * 299.99707 * 13 12 2 32 32 H 1.08999 * 109.47506 * 289.99793 * 14 12 2 33 33 H 1.09002 * 109.47089 * 50.00220 * 14 12 2 34 34 H 1.08001 * 128.06881 * 359.97438 * 16 15 14 35 35 H 1.07997 * 122.77511 * 359.97438 * 19 18 17 36 36 H 1.08000 * 122.39749 * 180.18840 * 20 19 18 37 37 H 1.08007 * 125.01463 * 179.77332 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8021 0.8742 2.6994 10 1 0.9770 1.9951 3.9071 11 1 0.8489 2.1772 1.4924 12 7 2.0197 -0.6924 -1.1995 13 6 1.4344 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4090 15 6 2.4775 -0.5160 -3.5794 16 6 1.9496 -1.4329 -4.5082 17 6 2.9961 -1.6747 -5.3629 18 6 2.9947 -2.5653 -6.5326 19 6 4.0552 -2.7812 -7.3596 20 6 3.8064 -3.6645 -8.3865 21 6 2.5665 -4.1642 -8.4196 22 16 1.6210 -3.5132 -7.0878 23 8 4.0259 -0.9356 -4.9094 24 7 3.7166 -0.3051 -3.9253 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.9032 -0.5282 4.4375 29 1 0.3492 -1.9548 -1.3695 30 1 1.8134 -2.5256 -2.2047 31 1 1.7061 -2.6220 -0.4304 32 1 0.6815 0.1054 -2.6088 33 1 2.1025 1.1190 -2.2603 34 1 0.9530 -1.8477 -4.5417 35 1 5.0126 -2.3013 -7.2201 36 1 4.5575 -3.9308 -9.1154 37 1 2.2000 -4.8646 -9.1556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161946607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:48 Heat of formation + Delta-G solvation = 95.074100 kcal Electronic energy + Delta-G solvation = -20416.543158 eV Core-core repulsion = 17289.003785 eV Total energy + Delta-G solvation = -3127.539373 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.93114 -39.35665 -38.65419 -35.70175 -34.40441 -33.72005 -31.57920 -29.60911 -28.82966 -27.24400 -26.03060 -25.24186 -24.16730 -22.17551 -21.18007 -19.80400 -19.12804 -18.76060 -18.62093 -17.52838 -17.21956 -16.47689 -16.22581 -15.75085 -15.47837 -14.86309 -14.81225 -14.35991 -14.20762 -14.14640 -13.89845 -13.57037 -13.28323 -13.22530 -13.09211 -12.92106 -12.61202 -12.34800 -12.01233 -11.91020 -11.79664 -11.49314 -11.28424 -11.24815 -11.04842 -10.75757 -9.49109 -9.24695 -9.03131 -8.28389 -6.31798 -0.62853 0.35859 0.75979 0.96773 1.17796 1.29420 1.36367 1.46115 1.88863 2.19499 2.31712 3.04454 3.06191 3.24654 3.44273 3.92714 4.10188 4.20034 4.23246 4.37086 4.43591 4.49232 4.55355 4.58016 4.62466 4.65156 4.68901 4.77392 4.93340 4.97904 5.10363 5.17495 5.30199 5.40246 5.44932 5.60408 5.97476 6.31550 6.62238 6.74015 7.24634 7.32581 8.88862 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.003171 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.731645 B = 8828.516407 C = 8975.001821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.186 3.814 3 H 0.034 0.966 4 C -0.504 4.504 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.263 1.263 10 H -0.300 1.300 11 H -0.248 1.248 12 N -0.542 5.542 13 C 0.040 3.960 14 C 0.127 3.873 15 C 0.033 3.967 16 C -0.214 4.214 17 C 0.038 3.962 18 C -0.172 4.172 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.194 4.194 22 S 0.172 5.828 23 O 0.105 5.895 24 N -0.379 5.379 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.066 0.934 28 H 0.266 0.734 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.193 0.807 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -4.952 -28.267 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 H 0.052 0.948 4 C -0.543 4.543 5 H 0.052 0.948 6 C -0.186 4.186 7 N -0.591 5.591 8 Si 0.779 3.221 9 H -0.189 1.189 10 H -0.228 1.228 11 H -0.171 1.171 12 N -0.266 5.266 13 C -0.108 4.108 14 C -0.001 4.001 15 C -0.124 4.124 16 C -0.236 4.236 17 C -0.027 4.027 18 C -0.290 4.290 19 C -0.133 4.133 20 C -0.174 4.174 21 C -0.330 4.330 22 S 0.437 5.563 23 O 0.036 5.964 24 N -0.083 5.083 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.210 0.790 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.980 -4.438 -27.037 27.686 hybrid contribution -0.083 0.403 0.332 0.529 sum -4.063 -4.035 -26.705 27.312 Atomic orbital electron populations 1.22700 0.99062 1.01861 1.00424 1.19584 0.90582 0.94224 0.87769 0.94840 1.21142 1.30528 1.12527 0.90093 0.94813 1.25795 0.97538 1.00071 0.95210 1.70043 1.47887 1.42615 0.98586 0.85811 0.79095 0.79852 0.77335 1.18901 1.22808 1.17148 1.61952 1.60015 1.03373 1.01289 1.22223 0.97461 0.90231 1.00928 1.20412 0.97553 0.96688 0.85493 1.23378 0.90617 0.99231 0.99204 1.22777 1.02189 1.02746 0.95910 1.21716 0.87680 0.96833 0.96506 1.21961 1.01368 1.06410 0.99262 1.21048 0.99169 0.98921 0.94194 1.20291 0.98141 0.98689 1.00273 1.26394 0.97507 1.06285 1.02832 1.84233 1.11349 1.38028 1.22681 1.84943 1.35739 1.43564 1.32139 1.73839 1.17258 1.16170 1.00984 0.92085 0.94307 0.91489 0.92529 0.93922 0.91880 0.93526 0.90283 0.89985 0.78974 0.82992 0.80968 0.78142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.25 7.92 71.98 0.57 -6.68 16 2 C 0.19 8.71 1.90 44.17 0.08 8.79 16 3 H 0.03 1.62 6.99 -2.39 -0.02 1.60 16 4 C -0.50 -29.25 8.55 25.60 0.22 -29.03 16 5 H 0.03 2.22 7.35 -2.91 -0.02 2.20 16 6 C 0.01 0.63 5.45 84.65 0.46 1.09 16 7 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 8 Si 0.95 44.85 24.37 68.60 1.67 46.52 16 9 H -0.26 -11.61 6.87 99.48 0.68 -10.92 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.25 -10.75 6.53 99.48 0.65 -10.10 16 12 N -0.54 -22.76 4.69 -906.04 -4.25 -27.01 16 13 C 0.04 1.50 8.63 127.69 1.10 2.61 16 14 C 0.13 4.29 5.12 85.56 0.44 4.73 16 15 C 0.03 1.08 6.00 43.40 0.26 1.34 16 16 C -0.21 -5.59 9.85 22.66 0.22 -5.36 16 17 C 0.04 0.98 7.29 24.34 0.18 1.15 16 18 C -0.17 -3.45 6.45 24.10 0.16 -3.29 16 19 C -0.10 -1.64 10.17 21.67 0.22 -1.42 16 20 C -0.14 -1.61 10.15 21.12 0.21 -1.40 16 21 C -0.19 -1.89 11.21 66.79 0.75 -1.14 16 22 S 0.17 2.46 23.12 -56.49 -1.31 1.15 16 23 O 0.10 3.26 11.23 66.03 0.74 4.00 16 24 N -0.38 -13.54 12.05 -48.66 -0.59 -14.13 16 25 H 0.06 2.39 6.33 -2.39 -0.02 2.38 16 26 H 0.04 1.61 3.27 -2.39 -0.01 1.60 16 27 H 0.07 2.16 6.91 -2.39 -0.02 2.14 16 28 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 29 H 0.04 1.43 6.21 -2.39 -0.01 1.41 16 30 H 0.06 2.14 6.34 -2.39 -0.02 2.13 16 31 H 0.05 2.07 6.86 -2.39 -0.02 2.05 16 32 H 0.08 2.23 7.06 -2.39 -0.02 2.21 16 33 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 34 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 35 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -71.84 314.40 2.46 -69.39 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 1.02 Total: 8.69 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 4.87 Total: -28.61 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -4.54 Total: -101.14 kcal Atomic # 8 Polarization: 3.26 SS G_CDS: 0.74 Total: 4.00 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.67 Total: 46.52 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -1.31 Total: 1.15 kcal Total: -71.84 2.46 -69.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161946607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.459 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds