Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.40784 * 126.67355 * 94.71420 * 15 14 12 17 17 C 1.37260 * 103.86319 * 179.85808 * 16 15 14 18 18 C 1.47022 * 126.96531 * 180.12709 * 17 16 15 19 19 C 1.36194 * 125.33031 * 180.02562 * 18 17 16 20 20 C 1.37719 * 114.43869 * 179.83149 * 19 18 17 21 21 C 1.33731 * 115.19228 * 0.45984 * 20 19 18 22 22 S 1.75821 * 109.96053 * 359.74750 * 21 20 19 23 23 O 1.34613 * 106.06696 * 0.39403 * 17 16 15 24 24 N 1.20892 * 111.40292 * 359.73330 * 23 17 16 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 30 30 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 32 32 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 33 33 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 34 34 H 1.07998 * 128.06801 * 359.96239 * 16 15 14 35 35 H 1.08001 * 122.78592 * 359.97438 * 19 18 17 36 36 H 1.07994 * 122.40590 * 180.18683 * 20 19 18 37 37 H 1.08004 * 125.01775 * 179.77574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5869 -0.1184 4.1518 17 6 3.8038 -0.9804 5.1978 18 6 4.9440 -0.9750 6.1259 19 6 5.1263 -1.8487 7.1546 20 6 6.2773 -1.6408 7.8816 21 6 7.0300 -0.6132 7.4743 22 16 6.2825 0.1652 6.0863 23 8 2.7639 -1.8352 5.1979 24 7 1.9850 -1.5825 4.3086 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 1.8764 -2.6150 0.3648 30 1 1.9053 -2.5654 2.1441 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0872 2.3124 33 1 0.5722 -0.0344 2.5726 34 1 4.2060 0.7052 3.8282 35 1 4.4273 -2.6406 7.3802 36 1 6.5502 -2.2603 8.7230 37 1 7.9599 -0.3070 7.9304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161946717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = 107.969359 kcal Electronic energy + Delta-G solvation = -20336.838071 eV Core-core repulsion = 17209.857878 eV Total energy + Delta-G solvation = -3126.980192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.69732 -37.96286 -37.43153 -34.19400 -32.88226 -32.26414 -28.89811 -28.69500 -27.29338 -25.19691 -24.71532 -24.06916 -22.76433 -21.13246 -19.54205 -18.83482 -18.09448 -17.46913 -16.52369 -16.17283 -15.61444 -15.18221 -14.42268 -14.31932 -13.82792 -13.56199 -13.42082 -13.29095 -12.90202 -12.63651 -12.51026 -12.19420 -11.63426 -11.33711 -11.13965 -11.08066 -10.96937 -10.81841 -10.64355 -10.49757 -10.31771 -10.04373 -10.02426 -9.75602 -8.90788 -8.81143 -8.40391 -8.35439 -7.23260 -6.02879 -4.06525 0.20295 1.10467 1.63555 1.73818 2.34569 2.69400 3.22718 3.30990 3.37207 3.41130 4.32258 4.40557 4.43198 4.74289 5.00897 5.16367 5.23965 5.27085 5.29699 5.30973 5.57985 5.73030 5.88936 5.99227 6.06230 6.11576 6.21878 6.27079 6.44292 6.66715 6.81227 6.90903 7.07530 7.42060 7.69017 7.80080 8.05173 8.32747 8.41445 8.53706 8.98895 9.58457 11.04361 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.003208 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.305690 B = 8727.073803 C = 9147.012786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.212 3.788 3 H 0.042 0.958 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.529 5.529 13 C 0.033 3.967 14 C 0.124 3.876 15 C 0.051 3.949 16 C -0.193 4.193 17 C 0.020 3.980 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.133 4.133 21 C -0.217 4.217 22 S 0.170 5.830 23 O 0.109 5.891 24 N -0.359 5.359 25 H 0.032 0.968 26 H 0.008 0.992 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.571 -1.268 20.121 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.106 3.894 3 H 0.060 0.940 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.254 5.254 13 C -0.115 4.115 14 C -0.005 4.005 15 C -0.107 4.107 16 C -0.216 4.216 17 C -0.046 4.046 18 C -0.243 4.243 19 C -0.145 4.145 20 C -0.163 4.163 21 C -0.354 4.354 22 S 0.435 5.565 23 O 0.040 5.960 24 N -0.062 5.062 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.039 0.961 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.190 0.810 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.327 -0.728 18.957 21.140 hybrid contribution -0.382 -1.030 -0.069 1.101 sum 8.945 -1.758 18.888 20.973 Atomic orbital electron populations 1.22426 1.00716 0.99569 1.00636 1.19346 0.89873 0.94592 0.85560 0.94038 1.21097 1.30651 1.12556 0.89555 0.91902 1.24921 0.95175 0.95145 0.98995 1.69883 1.36956 1.23084 1.23455 0.86503 0.78518 0.80012 0.82414 1.20644 1.19946 1.21341 1.62390 1.59570 1.02249 1.01145 1.22263 0.97356 0.90775 1.01111 1.20434 0.96062 0.97669 0.86294 1.23506 0.94953 0.93542 0.98673 1.22610 0.98827 1.03478 0.96688 1.21263 0.91266 0.94056 0.97974 1.21863 0.98000 1.03789 1.00669 1.20711 0.98855 1.00223 0.94674 1.20012 0.94903 0.99196 1.02235 1.25910 1.05428 1.01985 1.02064 1.84324 1.13348 1.30283 1.28527 1.84951 1.24895 1.45210 1.40941 1.73835 1.13890 1.17373 1.01117 0.94933 0.97338 0.89148 0.92967 0.90766 0.93763 0.96116 0.89105 0.93478 0.81011 0.83406 0.83744 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.28 37.16 0.31 -3.91 16 2 C 0.21 5.31 2.34 -68.87 -0.16 5.15 16 3 H 0.04 1.12 8.03 -51.92 -0.42 0.70 16 4 C -0.50 -13.68 7.94 -34.44 -0.27 -13.95 16 5 H 0.06 1.74 6.75 -52.49 -0.35 1.38 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.65 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.53 -11.66 4.73 -237.73 -1.13 -12.79 16 13 C 0.03 0.71 8.72 60.06 0.52 1.24 16 14 C 0.12 2.35 4.99 -4.98 -0.02 2.32 16 15 C 0.05 0.88 6.04 -82.25 -0.50 0.39 16 16 C -0.19 -2.88 10.92 -38.98 -0.43 -3.31 16 17 C 0.02 0.27 7.29 -36.38 -0.27 0.01 16 18 C -0.12 -1.42 6.45 -36.76 -0.24 -1.66 16 19 C -0.11 -1.08 10.17 -40.51 -0.41 -1.49 16 20 C -0.13 -1.02 10.15 -41.35 -0.42 -1.44 16 21 C -0.22 -1.59 11.21 29.15 0.33 -1.26 16 22 S 0.17 1.56 23.12 -107.50 -2.49 -0.93 16 23 O 0.11 1.70 11.23 15.63 0.18 1.88 16 24 N -0.36 -6.31 10.95 33.52 0.37 -5.95 16 25 H 0.03 0.77 6.38 -51.93 -0.33 0.44 16 26 H 0.01 0.17 6.75 -51.93 -0.35 -0.18 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.66 6.53 -51.93 -0.34 1.32 16 30 H 0.04 0.89 6.35 -51.93 -0.33 0.56 16 31 H 0.02 0.44 6.28 -51.93 -0.33 0.11 16 32 H 0.09 1.60 8.00 -51.93 -0.42 1.18 16 33 H 0.05 0.90 6.94 -51.93 -0.36 0.54 16 34 H 0.17 2.21 8.06 -52.49 -0.42 1.78 16 35 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 320.63 15.07 4.83 4.83 Total: -1.00 -29.57 320.63 -8.65 -38.22 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.37 Total: -0.55 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -1.65 Total: -16.41 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.13 Total: -43.38 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.18 Total: 1.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.49 Total: -0.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.57 -8.65 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161946717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.189 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds