Wall clock time and date at job start Tue Mar 31 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 C 1.40784 * 126.67355 * 94.71420 * 15 14 12 17 17 C 1.37260 * 103.86319 * 179.85808 * 16 15 14 18 18 C 1.47022 * 126.96531 * 180.12709 * 17 16 15 19 19 C 1.36194 * 125.33031 * 180.02562 * 18 17 16 20 20 C 1.37719 * 114.43869 * 179.83149 * 19 18 17 21 21 C 1.33731 * 115.19228 * 0.45984 * 20 19 18 22 22 S 1.75821 * 109.96053 * 359.74750 * 21 20 19 23 23 O 1.34613 * 106.06696 * 0.39403 * 17 16 15 24 24 N 1.20892 * 111.40292 * 359.73330 * 23 17 16 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 30 30 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 31 31 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 32 32 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 33 33 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 34 34 H 1.07998 * 128.06801 * 359.96239 * 16 15 14 35 35 H 1.08001 * 122.78592 * 359.97438 * 19 18 17 36 36 H 1.07994 * 122.40590 * 180.18683 * 20 19 18 37 37 H 1.08004 * 125.01775 * 179.77574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 6 3.5869 -0.1184 4.1518 17 6 3.8038 -0.9804 5.1978 18 6 4.9440 -0.9750 6.1259 19 6 5.1263 -1.8487 7.1546 20 6 6.2773 -1.6408 7.8816 21 6 7.0300 -0.6132 7.4743 22 16 6.2825 0.1652 6.0863 23 8 2.7639 -1.8352 5.1979 24 7 1.9850 -1.5825 4.3086 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 1.8764 -2.6150 0.3648 30 1 1.9053 -2.5654 2.1441 31 1 0.4385 -2.0742 1.2640 32 1 1.9297 1.0872 2.3124 33 1 0.5722 -0.0344 2.5726 34 1 4.2060 0.7052 3.8282 35 1 4.4273 -2.6406 7.3802 36 1 6.5502 -2.2603 8.7230 37 1 7.9599 -0.3070 7.9304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161946717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:50 Heat of formation + Delta-G solvation = 90.853595 kcal Electronic energy + Delta-G solvation = -20337.580266 eV Core-core repulsion = 17209.857878 eV Total energy + Delta-G solvation = -3127.722388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.93005 -39.20316 -38.64203 -35.68664 -34.41431 -33.65388 -30.73575 -29.60534 -28.90755 -27.24925 -25.88596 -25.35825 -24.04980 -22.25710 -21.18437 -19.77684 -19.11613 -18.73797 -18.21514 -17.52762 -17.05524 -16.44231 -16.16559 -15.64326 -15.41775 -14.96880 -14.58185 -14.29346 -14.14270 -13.90797 -13.53138 -13.45143 -13.26112 -13.00719 -12.89631 -12.72263 -12.65683 -12.43856 -12.14704 -11.99391 -11.85690 -11.77209 -11.29414 -11.21149 -10.91462 -10.50538 -9.49292 -9.24074 -9.01021 -8.12473 -6.23077 -0.62079 0.36703 0.73714 0.98775 1.18985 1.42616 1.43311 1.53522 1.90008 2.17918 2.42612 3.03747 3.17093 3.33338 3.49051 3.92695 4.10480 4.23672 4.26428 4.45964 4.52554 4.55179 4.59765 4.65994 4.70150 4.77190 4.87262 4.94988 5.08228 5.09663 5.10725 5.30652 5.46227 5.47802 5.67223 5.74255 6.10420 6.37586 6.60791 6.87950 7.20271 7.45699 8.93865 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.003208 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.305690 B = 8727.073803 C = 9147.012786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.217 3.783 3 H 0.019 0.981 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.283 1.283 12 N -0.536 5.536 13 C 0.045 3.955 14 C 0.129 3.871 15 C 0.036 3.964 16 C -0.209 4.209 17 C 0.040 3.960 18 C -0.171 4.171 19 C -0.098 4.098 20 C -0.144 4.144 21 C -0.193 4.193 22 S 0.165 5.835 23 O 0.107 5.893 24 N -0.383 5.383 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.262 0.738 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.018 0.982 32 H 0.100 0.900 33 H 0.043 0.957 34 H 0.187 0.813 35 H 0.155 0.845 36 H 0.175 0.825 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.473 -1.804 21.818 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.111 3.889 3 H 0.037 0.963 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.196 1.196 11 H -0.208 1.208 12 N -0.261 5.261 13 C -0.104 4.104 14 C 0.001 3.999 15 C -0.121 4.121 16 C -0.232 4.232 17 C -0.026 4.026 18 C -0.289 4.289 19 C -0.131 4.131 20 C -0.173 4.173 21 C -0.330 4.330 22 S 0.430 5.570 23 O 0.039 5.961 24 N -0.087 5.087 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.118 0.882 33 H 0.061 0.939 34 H 0.204 0.796 35 H 0.173 0.827 36 H 0.192 0.808 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 11.229 -1.263 20.666 23.554 hybrid contribution -0.839 -0.873 -0.390 1.273 sum 10.390 -2.136 20.276 22.883 Atomic orbital electron populations 1.22235 1.00232 0.99193 1.00358 1.19113 0.90097 0.93351 0.86362 0.96343 1.21336 1.30842 1.12561 0.90870 0.92730 1.25650 0.95302 0.95799 1.01685 1.69996 1.37620 1.24072 1.24122 0.85544 0.78093 0.78952 0.78960 1.20082 1.19633 1.20847 1.62255 1.59780 1.02558 1.01489 1.22132 0.97034 0.90395 1.00823 1.20366 0.96085 0.97951 0.85544 1.23338 0.95998 0.94206 0.98579 1.22731 0.98471 1.04640 0.97330 1.21638 0.90898 0.92480 0.97541 1.21941 0.98589 1.06403 1.02005 1.21048 0.99306 0.99208 0.93551 1.20302 0.94129 0.99872 1.03008 1.26398 1.05792 1.00594 1.00199 1.84367 1.12733 1.30086 1.29770 1.84895 1.25268 1.45501 1.40431 1.73801 1.14983 1.17949 1.01957 0.95227 0.95399 0.91508 0.92847 0.92229 0.92724 0.96389 0.88224 0.93899 0.79563 0.82730 0.80798 0.78137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.91 8.28 71.98 0.60 -7.31 16 2 C 0.22 11.10 2.34 44.17 0.10 11.20 16 3 H 0.02 1.03 8.03 -2.38 -0.02 1.01 16 4 C -0.52 -28.73 7.94 25.60 0.20 -28.53 16 5 H 0.05 3.06 6.75 -2.91 -0.02 3.04 16 6 C 0.01 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.48 11.32 21.45 0.24 -52.24 16 8 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.54 -24.00 4.73 -906.03 -4.29 -28.28 16 13 C 0.04 1.93 8.72 127.69 1.11 3.04 16 14 C 0.13 4.92 4.99 85.56 0.43 5.35 16 15 C 0.04 1.24 6.04 43.40 0.26 1.51 16 16 C -0.21 -6.20 10.92 22.66 0.25 -5.95 16 17 C 0.04 1.09 7.29 24.34 0.18 1.27 16 18 C -0.17 -3.67 6.45 24.10 0.16 -3.51 16 19 C -0.10 -1.65 10.17 21.67 0.22 -1.43 16 20 C -0.14 -1.68 10.15 21.12 0.21 -1.47 16 21 C -0.19 -2.09 11.21 66.80 0.75 -1.35 16 22 S 0.17 2.70 23.12 -56.49 -1.31 1.39 16 23 O 0.11 3.34 11.23 66.11 0.74 4.08 16 24 N -0.38 -13.53 10.95 -48.67 -0.53 -14.06 16 25 H 0.03 1.42 6.38 -2.39 -0.02 1.41 16 26 H 0.03 1.21 6.75 -2.39 -0.02 1.19 16 27 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 28 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.06 2.71 6.53 -2.39 -0.02 2.69 16 30 H 0.05 2.22 6.35 -2.39 -0.02 2.21 16 31 H 0.02 0.77 6.28 -2.39 -0.01 0.75 16 32 H 0.10 3.55 8.00 -2.38 -0.02 3.53 16 33 H 0.04 1.66 6.94 -2.39 -0.02 1.64 16 34 H 0.19 4.75 8.06 -2.91 -0.02 4.72 16 35 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 37 H 0.20 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -63.67 320.63 2.89 -60.78 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.09 Total: 8.30 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 4.92 Total: -25.93 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -4.58 Total: -94.58 kcal Atomic # 8 Polarization: 3.34 SS G_CDS: 0.74 Total: 4.08 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -63.67 2.89 -60.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161946717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.633 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds