Wall clock time and date at job start Tue Mar 31 2020 06:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46795 * 2 1 4 4 C 1.50691 * 109.47192 * 120.00077 * 2 1 3 5 5 H 1.08006 * 120.00124 * 120.00077 * 4 2 1 6 6 C 1.37881 * 120.00253 * 299.99799 * 4 2 1 7 7 N 1.31512 * 119.99950 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99672 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47326 * 90.00034 * 8 6 4 10 10 H 1.48497 * 109.46722 * 209.99862 * 8 6 4 11 11 H 1.48501 * 109.47088 * 329.99171 * 8 6 4 12 12 N 1.46896 * 109.46985 * 240.00321 * 2 1 3 13 13 C 1.46904 * 111.00114 * 183.95445 * 12 2 1 14 14 C 1.46898 * 111.00278 * 59.99628 * 12 2 1 15 15 C 1.50703 * 109.47316 * 189.99675 * 14 12 2 16 16 C 1.33694 * 122.05526 * 95.00495 * 15 14 12 17 17 S 1.76252 * 108.26135 * 180.02562 * 16 15 14 18 18 C 1.76173 * 89.85764 * 359.97438 * 17 16 15 19 19 C 1.47096 * 125.48447 * 179.97438 * 18 17 16 20 20 C 1.36258 * 125.95865 * 0.02562 * 19 18 17 21 21 C 1.40785 * 106.72234 * 179.97438 * 20 19 18 22 22 C 1.34820 * 107.07795 * 359.97438 * 21 20 19 23 23 O 1.34281 * 108.71846 * 359.77752 * 22 21 20 24 24 N 1.30492 * 109.03256 * 0.02562 * 18 17 16 25 25 H 1.09002 * 109.46768 * 60.00049 * 1 2 3 26 26 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46834 * 299.99992 * 1 2 3 28 28 H 0.97001 * 119.99499 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46669 * 296.04585 * 13 12 2 30 30 H 1.08998 * 109.46958 * 56.04192 * 13 12 2 31 31 H 1.09003 * 109.47390 * 176.04456 * 13 12 2 32 32 H 1.09006 * 109.47047 * 70.00459 * 14 12 2 33 33 H 1.08998 * 109.47404 * 310.00360 * 14 12 2 34 34 H 1.07999 * 125.86919 * 359.75321 * 16 15 14 35 35 H 1.08002 * 126.63934 * 359.92856 * 20 19 18 36 36 H 1.08006 * 126.46254 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.63990 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8026 0.8727 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8473 2.1766 1.4921 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8580 -0.8910 -3.6159 16 6 0.9611 -1.7393 -4.1292 17 16 1.6994 -2.5584 -5.5042 18 6 3.1853 -1.6487 -5.2426 19 6 4.4099 -1.7633 -6.0495 20 6 4.5879 -2.5859 -7.1211 21 6 5.8995 -2.3692 -7.5845 22 6 6.4531 -1.4360 -6.7843 23 8 5.5493 -1.0684 -5.8617 24 7 3.0251 -0.8578 -4.2172 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9034 -0.5280 4.4375 29 1 3.9192 0.2044 -1.2301 30 1 3.8070 -1.2915 -0.2720 31 1 3.8165 -1.3721 -2.0501 32 1 2.0519 0.9347 -2.5281 33 1 0.4722 0.1325 -2.3564 34 1 -0.0417 -1.8989 -3.7615 35 1 3.8634 -3.2719 -7.5344 36 1 6.3728 -2.8579 -8.4234 37 1 7.4563 -1.0460 -6.8729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161998359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:01 Heat of formation + Delta-G solvation = 87.249432 kcal Electronic energy + Delta-G solvation = -20483.358904 eV Core-core repulsion = 17355.480228 eV Total energy + Delta-G solvation = -3127.878676 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.72508 -39.77361 -36.92284 -33.38928 -32.87308 -31.80099 -30.12988 -29.26003 -27.14202 -25.27562 -24.48040 -23.37646 -22.10248 -20.99214 -19.65436 -19.12249 -18.32500 -17.20427 -16.66778 -16.32315 -15.79348 -15.25846 -14.82695 -14.23178 -13.93368 -13.53965 -13.41209 -13.18582 -13.12878 -12.93729 -12.76422 -12.45198 -12.31970 -11.85222 -11.32913 -10.95507 -10.85854 -10.60606 -10.47524 -10.28514 -10.12296 -9.81982 -9.77586 -9.49743 -9.21748 -9.01460 -8.56444 -8.11733 -7.37433 -6.06569 -4.05275 0.21287 0.98998 1.59787 1.67955 2.29964 2.88962 3.01418 3.26040 3.36202 3.38535 3.82863 4.39494 4.65480 4.67418 4.86609 5.04838 5.22927 5.27225 5.35097 5.49317 5.52100 5.67354 5.79541 5.98856 6.12849 6.15375 6.19710 6.35900 6.40623 6.49990 6.63966 6.78844 6.81066 6.99228 7.26092 7.56356 7.72623 7.92565 8.06378 8.64824 9.00166 9.54831 11.06159 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.003641 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.800405 B = 7687.742397 C = 8260.188885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 H 0.000 1.000 4 C -0.505 4.505 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.521 5.521 13 C 0.040 3.960 14 C 0.115 3.885 15 C 0.089 3.911 16 C -0.222 4.222 17 S 0.114 5.886 18 C 0.117 3.883 19 C 0.061 3.939 20 C -0.176 4.176 21 C -0.214 4.214 22 C -0.021 4.021 23 O -0.150 6.150 24 N -0.436 5.436 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.014 0.986 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.092 0.908 34 H 0.185 0.815 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -2.272 -23.321 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.075 3.925 3 H 0.017 0.983 4 C -0.543 4.543 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.246 5.246 13 C -0.108 4.108 14 C -0.016 4.016 15 C -0.043 4.043 16 C -0.362 4.362 17 S 0.368 5.632 18 C -0.158 4.158 19 C 0.007 3.993 20 C -0.199 4.199 21 C -0.233 4.233 22 C -0.092 4.092 23 O -0.045 6.045 24 N -0.151 5.151 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.110 0.890 34 H 0.202 0.798 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.099 -2.950 -23.385 23.663 hybrid contribution -0.429 1.926 0.815 2.135 sum 1.670 -1.024 -22.570 22.655 Atomic orbital electron populations 1.22244 0.98562 1.01411 0.98286 1.19710 0.91419 0.92785 0.88617 0.98283 1.20968 1.31935 1.13612 0.87811 0.89862 1.24920 0.95853 0.96604 0.95774 1.69879 1.45726 1.40248 0.97872 0.86881 0.80734 0.83835 0.76890 1.20508 1.22474 1.19399 1.61997 1.10784 1.51409 1.00386 1.22253 0.87212 0.99340 1.02038 1.20799 1.01115 0.93076 0.86638 1.20193 0.87183 0.98783 0.98155 1.26912 1.06195 1.02572 1.00476 1.84629 1.06552 1.41772 1.30267 1.24149 0.95173 0.99322 0.97114 1.18976 0.85052 0.97744 0.97551 1.21792 0.98518 1.02407 0.97139 1.21722 0.95188 1.02625 1.03747 1.24330 0.95140 0.99493 0.90229 1.84229 1.20038 1.52995 1.47205 1.66638 1.22225 1.20354 1.05903 0.95190 0.91922 0.93896 0.92609 0.96763 0.90044 0.93127 0.93813 0.88995 0.79765 0.82825 0.82734 0.77481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.47 37.16 0.31 -2.87 16 2 C 0.18 4.36 1.65 -68.87 -0.11 4.24 16 3 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 4 C -0.51 -14.22 8.46 -34.44 -0.29 -14.51 16 5 H 0.08 2.56 6.65 -52.48 -0.35 2.21 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 8 Si 0.89 21.94 24.37 -169.99 -4.14 17.80 16 9 H -0.28 -6.67 6.87 56.52 0.39 -6.28 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 12 N -0.52 -11.21 4.61 -237.73 -1.10 -12.30 16 13 C 0.04 0.86 9.02 60.07 0.54 1.40 16 14 C 0.11 2.06 5.19 -4.98 -0.03 2.03 16 15 C 0.09 1.47 5.54 -84.40 -0.47 1.00 16 16 C -0.22 -3.01 11.06 29.14 0.32 -2.69 16 17 S 0.11 1.32 23.19 -107.50 -2.49 -1.17 16 18 C 0.12 1.70 7.50 -14.53 -0.11 1.60 16 19 C 0.06 0.80 7.24 -36.70 -0.27 0.54 16 20 C -0.18 -1.80 10.64 -39.33 -0.42 -2.22 16 21 C -0.21 -1.82 10.88 -39.83 -0.43 -2.25 16 22 C -0.02 -0.19 12.08 29.52 0.36 0.16 16 23 O -0.15 -2.02 10.68 4.46 0.05 -1.97 16 24 N -0.44 -7.47 9.30 -7.73 -0.07 -7.54 16 25 H 0.03 0.54 6.20 -51.93 -0.32 0.22 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.04 0.96 3.27 -51.93 -0.17 0.79 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 1.91 6.10 -51.93 -0.32 1.59 16 31 H 0.05 1.04 6.41 -51.93 -0.33 0.71 16 32 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 33 H 0.09 1.49 5.77 -51.93 -0.30 1.19 16 34 H 0.19 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.15 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -32.64 316.33 -7.21 -39.84 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.30 Total: -1.06 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.69 Total: -11.65 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.40 Total: -46.56 kcal Atomic # 8 Polarization: -2.02 SS G_CDS: 0.05 Total: -1.97 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.64 -7.21 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161998359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.094 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds