Wall clock time and date at job start Tue Mar 31 2020 06:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46795 * 2 1 4 4 C 1.50691 * 109.47192 * 120.00077 * 2 1 3 5 5 H 1.08006 * 120.00124 * 120.00077 * 4 2 1 6 6 C 1.37881 * 120.00253 * 299.99799 * 4 2 1 7 7 N 1.31512 * 119.99950 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99672 * 0.02562 * 6 4 2 9 9 H 1.48492 * 109.47326 * 90.00034 * 8 6 4 10 10 H 1.48497 * 109.46722 * 209.99862 * 8 6 4 11 11 H 1.48501 * 109.47088 * 329.99171 * 8 6 4 12 12 N 1.46896 * 109.46985 * 240.00321 * 2 1 3 13 13 C 1.46904 * 111.00114 * 183.95445 * 12 2 1 14 14 C 1.46898 * 111.00278 * 59.99628 * 12 2 1 15 15 C 1.50703 * 109.47316 * 189.99675 * 14 12 2 16 16 C 1.33694 * 122.05526 * 95.00495 * 15 14 12 17 17 S 1.76252 * 108.26135 * 180.02562 * 16 15 14 18 18 C 1.76173 * 89.85764 * 359.97438 * 17 16 15 19 19 C 1.47096 * 125.48447 * 179.97438 * 18 17 16 20 20 C 1.36258 * 125.95865 * 0.02562 * 19 18 17 21 21 C 1.40785 * 106.72234 * 179.97438 * 20 19 18 22 22 C 1.34820 * 107.07795 * 359.97438 * 21 20 19 23 23 O 1.34281 * 108.71846 * 359.77752 * 22 21 20 24 24 N 1.30492 * 109.03256 * 0.02562 * 18 17 16 25 25 H 1.09002 * 109.46768 * 60.00049 * 1 2 3 26 26 H 1.09002 * 109.46795 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46834 * 299.99992 * 1 2 3 28 28 H 0.97001 * 119.99499 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46669 * 296.04585 * 13 12 2 30 30 H 1.08998 * 109.46958 * 56.04192 * 13 12 2 31 31 H 1.09003 * 109.47390 * 176.04456 * 13 12 2 32 32 H 1.09006 * 109.47047 * 70.00459 * 14 12 2 33 33 H 1.08998 * 109.47404 * 310.00360 * 14 12 2 34 34 H 1.07999 * 125.86919 * 359.75321 * 16 15 14 35 35 H 1.08002 * 126.63934 * 359.92856 * 20 19 18 36 36 H 1.08006 * 126.46254 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.63990 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8026 0.8727 2.6998 10 1 0.9761 1.9950 3.9068 11 1 0.8473 2.1766 1.4921 12 7 2.0197 -0.6924 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5486 -0.0263 -2.4211 15 6 1.8580 -0.8910 -3.6159 16 6 0.9611 -1.7393 -4.1292 17 16 1.6994 -2.5584 -5.5042 18 6 3.1853 -1.6487 -5.2426 19 6 4.4099 -1.7633 -6.0495 20 6 4.5879 -2.5859 -7.1211 21 6 5.8995 -2.3692 -7.5845 22 6 6.4531 -1.4360 -6.7843 23 8 5.5493 -1.0684 -5.8617 24 7 3.0251 -0.8578 -4.2172 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9034 -0.5280 4.4375 29 1 3.9192 0.2044 -1.2301 30 1 3.8070 -1.2915 -0.2720 31 1 3.8165 -1.3721 -2.0501 32 1 2.0519 0.9347 -2.5281 33 1 0.4722 0.1325 -2.3564 34 1 -0.0417 -1.8989 -3.7615 35 1 3.8634 -3.2719 -7.5344 36 1 6.3728 -2.8579 -8.4234 37 1 7.4563 -1.0460 -6.8729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161998359.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:00 Heat of formation + Delta-G solvation = 63.739578 kcal Electronic energy + Delta-G solvation = -20484.378368 eV Core-core repulsion = 17355.480228 eV Total energy + Delta-G solvation = -3128.898140 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.52133 -40.93112 -38.59829 -34.85678 -34.15622 -33.05538 -31.87934 -30.30858 -28.60477 -26.75572 -26.11801 -24.85636 -22.88708 -22.06883 -21.28371 -20.23970 -19.31546 -18.83724 -18.03542 -17.30294 -17.17294 -16.48355 -16.36297 -15.86496 -15.40124 -14.99970 -14.66481 -14.45736 -14.32618 -14.08675 -13.87194 -13.77256 -13.64752 -13.45449 -12.85767 -12.64428 -12.53002 -12.42299 -12.14324 -12.04300 -11.44973 -11.15885 -11.03280 -10.82578 -10.73536 -10.69034 -10.19700 -9.13844 -8.98208 -8.28576 -6.32449 -0.74865 0.03573 0.57476 0.78956 1.30098 1.36195 1.45998 1.52559 1.95242 2.13110 2.31798 2.89090 3.04909 3.32675 3.83329 3.98311 4.04585 4.13802 4.30341 4.39715 4.42613 4.54522 4.64458 4.65487 4.73789 4.82098 4.85718 4.87545 4.96107 5.02361 5.06340 5.16231 5.41467 5.49975 5.63225 5.97472 6.03998 6.23560 6.62982 6.70234 6.73574 7.31996 8.87891 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027504 B = 0.003641 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.800405 B = 7687.742397 C = 8260.188885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.184 3.816 3 H -0.011 1.011 4 C -0.510 4.510 5 H 0.039 0.961 6 C 0.012 3.988 7 N -0.948 5.948 8 Si 0.951 3.049 9 H -0.259 1.259 10 H -0.300 1.300 11 H -0.252 1.252 12 N -0.528 5.528 13 C 0.055 3.945 14 C 0.119 3.881 15 C 0.061 3.939 16 C -0.225 4.225 17 S 0.190 5.810 18 C 0.099 3.901 19 C 0.012 3.988 20 C -0.159 4.159 21 C -0.215 4.215 22 C -0.019 4.019 23 O -0.185 6.185 24 N -0.482 5.482 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.034 0.966 33 H 0.114 0.886 34 H 0.208 0.792 35 H 0.175 0.825 36 H 0.189 0.811 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -2.186 -26.367 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.076 3.924 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.058 0.942 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.184 1.184 10 H -0.228 1.228 11 H -0.176 1.176 12 N -0.252 5.252 13 C -0.094 4.094 14 C -0.011 4.011 15 C -0.071 4.071 16 C -0.365 4.365 17 S 0.446 5.554 18 C -0.174 4.174 19 C -0.041 4.041 20 C -0.182 4.182 21 C -0.234 4.234 22 C -0.089 4.089 23 O -0.081 6.081 24 N -0.198 5.198 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.132 0.868 34 H 0.225 0.775 35 H 0.193 0.807 36 H 0.206 0.794 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 0.758 -2.879 -26.472 26.639 hybrid contribution 0.158 1.748 1.565 2.352 sum 0.916 -1.131 -24.907 24.949 Atomic orbital electron populations 1.22128 0.95963 1.01953 0.99935 1.19568 0.93358 0.91518 0.87941 0.99332 1.21201 1.31086 1.12419 0.90085 0.94249 1.25789 0.97435 1.00031 0.95221 1.70037 1.47763 1.42508 0.98568 0.85829 0.79521 0.79781 0.77119 1.18431 1.22752 1.17640 1.61925 1.10152 1.51915 1.01238 1.22026 0.87988 0.98686 1.00691 1.20802 1.01969 0.92782 0.85560 1.19972 0.88194 1.00386 0.98567 1.27247 1.06793 1.01585 1.00896 1.84257 1.03653 1.39477 1.28047 1.24587 0.96911 0.99240 0.96677 1.19236 0.85293 1.00157 0.99448 1.22202 0.99586 1.00943 0.95459 1.22163 0.94420 1.02375 1.04407 1.25235 0.95792 0.98957 0.88883 1.84200 1.20919 1.54077 1.48916 1.66571 1.23159 1.22454 1.07622 0.91132 0.92028 0.94493 0.92488 0.97313 0.93108 0.92293 0.94802 0.86825 0.77530 0.80725 0.79410 0.73993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 8.47 71.98 0.61 -5.21 16 2 C 0.18 8.80 1.65 44.17 0.07 8.88 16 3 H -0.01 -0.54 7.20 -2.39 -0.02 -0.55 16 4 C -0.51 -29.70 8.46 25.60 0.22 -29.48 16 5 H 0.04 2.58 6.65 -2.91 -0.02 2.56 16 6 C 0.01 0.73 5.45 84.66 0.46 1.19 16 7 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 8 Si 0.95 45.11 24.37 68.60 1.67 46.78 16 9 H -0.26 -11.42 6.87 99.48 0.68 -10.74 16 10 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 11 H -0.25 -11.21 6.53 99.48 0.65 -10.56 16 12 N -0.53 -22.93 4.61 -906.03 -4.18 -27.11 16 13 C 0.05 2.48 9.02 127.69 1.15 3.63 16 14 C 0.12 4.18 5.19 85.56 0.44 4.63 16 15 C 0.06 1.97 5.54 41.60 0.23 2.20 16 16 C -0.23 -5.67 11.06 66.79 0.74 -4.93 16 17 S 0.19 3.99 23.19 -56.49 -1.31 2.68 16 18 C 0.10 2.84 7.50 87.22 0.65 3.50 16 19 C 0.01 0.30 7.24 24.13 0.17 0.48 16 20 C -0.16 -2.90 10.64 22.43 0.24 -2.66 16 21 C -0.22 -3.03 10.88 22.11 0.24 -2.79 16 22 C -0.02 -0.31 12.08 67.03 0.81 0.50 16 23 O -0.19 -4.94 10.68 -6.97 -0.07 -5.02 16 24 N -0.48 -16.65 9.30 -178.36 -1.66 -18.31 16 25 H 0.07 2.29 6.20 -2.39 -0.01 2.28 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 28 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 29 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 2.56 6.10 -2.39 -0.01 2.54 16 31 H 0.06 2.54 6.41 -2.39 -0.02 2.53 16 32 H 0.03 1.25 8.12 -2.38 -0.02 1.23 16 33 H 0.11 3.39 5.77 -2.39 -0.01 3.37 16 34 H 0.21 4.04 8.06 -2.91 -0.02 4.01 16 35 H 0.18 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.19 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.24 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -74.90 316.33 1.80 -73.10 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: 1.01 Total: 7.67 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 6.04 Total: -20.07 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -5.54 Total: -105.14 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.07 Total: -5.02 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.31 Total: 2.68 kcal Total: -74.90 1.80 -73.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161998359.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.838 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds