Wall clock time and date at job start Tue Mar 31 2020 06:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46807 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47117 * 119.99506 * 8 6 4 11 11 H 1.48495 * 109.47033 * 239.99986 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 C 1.33686 * 122.06256 * 94.99902 * 15 14 12 17 17 S 1.76238 * 108.26754 * 180.02562 * 16 15 14 18 18 C 1.76182 * 89.85742 * 359.97438 * 17 16 15 19 19 C 1.47098 * 125.48408 * 180.02562 * 18 17 16 20 20 C 1.36257 * 125.96508 * 359.96968 * 19 18 17 21 21 C 1.40784 * 106.72803 * 180.02562 * 20 19 18 22 22 C 1.34823 * 107.07168 * 0.02562 * 21 20 19 23 23 O 1.34279 * 108.72132 * 359.73690 * 22 21 20 24 24 N 1.30488 * 109.02719 * 359.74085 * 18 17 16 25 25 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 26 26 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 30 30 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 31 31 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 32 32 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 33 33 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 34 34 H 1.07996 * 125.86491 * 0.02562 * 16 15 14 35 35 H 1.08004 * 126.63610 * 0.02562 * 20 19 18 36 36 H 1.08000 * 126.46233 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.63528 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 6 2.9644 -0.7220 4.3469 17 16 2.9597 -1.9183 5.6411 18 6 1.4221 -2.5441 5.0510 19 6 0.6708 -3.6611 5.6439 20 6 1.0428 -4.3851 6.7366 21 6 0.0358 -5.3460 6.9481 22 6 -0.8915 -5.1658 5.9862 23 8 -0.5079 -4.1442 5.2036 24 7 1.0541 -1.8532 4.0070 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7090 1.1614 -3.4844 29 1 3.8163 -1.3720 2.0501 30 1 3.8069 -1.2915 0.2719 31 1 3.9192 0.2044 1.2301 32 1 2.0518 0.9347 2.5280 33 1 0.4722 0.1325 2.3564 34 1 3.7297 0.0201 4.1740 35 1 1.9372 -4.2483 7.3264 36 1 0.0109 -6.0875 7.7329 37 1 -1.7955 -5.7446 5.8672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161998492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:03 Heat of formation + Delta-G solvation = 78.262775 kcal Electronic energy + Delta-G solvation = -20416.855571 eV Core-core repulsion = 17288.587204 eV Total energy + Delta-G solvation = -3128.268367 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.66452 -39.68030 -36.74057 -33.34074 -32.96887 -31.66471 -29.47243 -28.70603 -27.43720 -25.13652 -24.40428 -23.20599 -22.04696 -20.96588 -19.64028 -19.10528 -18.21310 -17.04766 -16.29071 -16.25550 -15.61734 -15.29723 -14.48461 -14.13936 -13.96596 -13.48392 -13.37937 -13.16783 -13.09684 -12.75180 -12.53950 -12.40582 -11.82920 -11.51801 -11.10147 -10.99660 -10.66721 -10.53643 -10.23204 -10.10821 -10.02422 -9.87459 -9.74021 -9.64624 -9.17663 -8.84427 -8.41577 -8.06306 -7.18372 -6.00050 -4.04225 0.25423 1.03692 1.63465 1.73259 2.35413 2.95648 3.10859 3.30860 3.38710 3.43527 3.90031 4.42807 4.72076 4.72821 4.98784 5.10732 5.24154 5.32170 5.48302 5.55968 5.56567 5.73882 5.92022 6.05051 6.17239 6.20303 6.30753 6.37185 6.76291 6.87375 6.88921 7.10279 7.16457 7.52526 7.71602 7.84078 7.85304 8.21733 8.32556 8.58877 9.01946 9.60540 11.06860 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.003683 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.624053 B = 7600.505664 C = 8180.575684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.528 5.528 13 C 0.034 3.966 14 C 0.116 3.884 15 C 0.100 3.900 16 C -0.242 4.242 17 S 0.106 5.894 18 C 0.120 3.880 19 C 0.062 3.938 20 C -0.177 4.177 21 C -0.215 4.215 22 C -0.021 4.021 23 O -0.148 6.148 24 N -0.424 5.424 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.036 0.964 28 H 0.260 0.740 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.011 0.989 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.181 0.819 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.445 -7.417 20.025 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.108 3.892 3 H 0.017 0.983 4 C -0.540 4.540 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.253 5.253 13 C -0.114 4.114 14 C -0.015 4.015 15 C -0.033 4.033 16 C -0.382 4.382 17 S 0.360 5.640 18 C -0.155 4.155 19 C 0.008 3.992 20 C -0.200 4.200 21 C -0.234 4.234 22 C -0.091 4.091 23 O -0.042 6.042 24 N -0.138 5.138 25 H 0.028 0.972 26 H 0.104 0.896 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.030 0.970 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.198 0.802 35 H 0.171 0.829 36 H 0.172 0.828 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.240 -7.969 20.148 21.702 hybrid contribution 0.552 0.751 -1.409 1.690 sum 1.792 -7.218 18.739 20.161 Atomic orbital electron populations 1.21861 0.97543 0.99932 0.99838 1.19273 0.92488 0.91924 0.85481 0.98270 1.21178 1.30960 1.12242 0.89661 0.91795 1.24925 0.95212 0.95086 0.98999 1.69902 1.36977 1.23063 1.23308 0.86462 0.78603 0.79600 0.82881 1.19760 1.20994 1.21165 1.62077 1.09291 1.52649 1.01322 1.22280 0.88749 0.98721 1.01667 1.20764 1.02486 0.91625 0.86605 1.20306 0.90045 0.94874 0.98125 1.26945 1.04472 1.06454 1.00286 1.84569 1.20379 1.28309 1.30719 1.24222 0.95810 0.98829 0.96605 1.18979 0.87154 0.96722 0.96376 1.21777 1.02091 0.97945 0.98157 1.21711 0.95802 1.03148 1.02738 1.24337 1.01381 0.91163 0.92243 1.84247 1.31986 1.39727 1.48272 1.66597 1.31579 1.05512 1.10065 0.97232 0.89593 0.94472 0.93038 0.94051 0.90241 0.97021 0.94049 0.88715 0.80185 0.82879 0.82768 0.77479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.76 37.16 0.33 -3.04 16 2 C 0.21 5.49 2.06 -68.87 -0.14 5.35 16 3 H 0.00 -0.01 8.14 -51.92 -0.42 -0.43 16 4 C -0.50 -13.92 7.88 -34.44 -0.27 -14.19 16 5 H 0.06 1.78 6.41 -52.49 -0.34 1.45 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.53 -11.84 4.61 -237.73 -1.10 -12.94 16 13 C 0.03 0.69 8.97 60.07 0.54 1.23 16 14 C 0.12 2.24 5.19 -4.98 -0.03 2.21 16 15 C 0.10 1.73 5.53 -84.40 -0.47 1.27 16 16 C -0.24 -3.39 9.79 29.14 0.29 -3.10 16 17 S 0.11 1.28 23.19 -107.50 -2.49 -1.21 16 18 C 0.12 1.86 7.50 -14.53 -0.11 1.75 16 19 C 0.06 0.87 7.24 -36.70 -0.27 0.60 16 20 C -0.18 -1.91 10.64 -39.33 -0.42 -2.32 16 21 C -0.21 -1.94 10.88 -39.83 -0.43 -2.37 16 22 C -0.02 -0.20 12.08 29.52 0.36 0.16 16 23 O -0.15 -2.12 10.68 4.46 0.05 -2.08 16 24 N -0.42 -7.82 10.57 -7.73 -0.08 -7.90 16 25 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 26 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.04 0.74 6.45 -51.93 -0.34 0.41 16 30 H 0.08 1.72 6.10 -51.93 -0.32 1.41 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.09 1.91 5.83 -51.93 -0.30 1.61 16 34 H 0.18 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 36 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.21 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -31.74 323.14 -8.31 -40.05 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.44 Total: -1.40 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.72 Total: -10.94 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: -0.55 Total: -45.82 kcal Atomic # 8 Polarization: -2.12 SS G_CDS: 0.05 Total: -2.08 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.49 Total: -1.21 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.74 -8.31 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161998492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.313 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds