Wall clock time and date at job start Tue Mar 31 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46807 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47117 * 119.99506 * 8 6 4 11 11 H 1.48495 * 109.47033 * 239.99986 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 C 1.33686 * 122.06256 * 94.99902 * 15 14 12 17 17 S 1.76238 * 108.26754 * 180.02562 * 16 15 14 18 18 C 1.76182 * 89.85742 * 359.97438 * 17 16 15 19 19 C 1.47098 * 125.48408 * 180.02562 * 18 17 16 20 20 C 1.36257 * 125.96508 * 359.96968 * 19 18 17 21 21 C 1.40784 * 106.72803 * 180.02562 * 20 19 18 22 22 C 1.34823 * 107.07168 * 0.02562 * 21 20 19 23 23 O 1.34279 * 108.72132 * 359.73690 * 22 21 20 24 24 N 1.30488 * 109.02719 * 359.74085 * 18 17 16 25 25 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 26 26 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 29 29 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 30 30 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 31 31 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 32 32 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 33 33 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 34 34 H 1.07996 * 125.86491 * 0.02562 * 16 15 14 35 35 H 1.08004 * 126.63610 * 0.02562 * 20 19 18 36 36 H 1.08000 * 126.46233 * 180.02562 * 21 20 19 37 37 H 1.07997 * 125.63528 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 6 2.9644 -0.7220 4.3469 17 16 2.9597 -1.9183 5.6411 18 6 1.4221 -2.5441 5.0510 19 6 0.6708 -3.6611 5.6439 20 6 1.0428 -4.3851 6.7366 21 6 0.0358 -5.3460 6.9481 22 6 -0.8915 -5.1658 5.9862 23 8 -0.5079 -4.1442 5.2036 24 7 1.0541 -1.8532 4.0070 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7090 1.1614 -3.4844 29 1 3.8163 -1.3720 2.0501 30 1 3.8069 -1.2915 0.2719 31 1 3.9192 0.2044 1.2301 32 1 2.0518 0.9347 2.5280 33 1 0.4722 0.1325 2.3564 34 1 3.7297 0.0201 4.1740 35 1 1.9372 -4.2483 7.3264 36 1 0.0109 -6.0875 7.7329 37 1 -1.7955 -5.7446 5.8672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161998492.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:02 Heat of formation + Delta-G solvation = 56.981187 kcal Electronic energy + Delta-G solvation = -20417.778410 eV Core-core repulsion = 17288.587204 eV Total energy + Delta-G solvation = -3129.191205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.51071 -40.89937 -38.46961 -34.95112 -34.13952 -32.89588 -31.12977 -30.04279 -28.91718 -26.90001 -25.79945 -24.81985 -22.87682 -22.09783 -21.31214 -20.27142 -19.21112 -18.36586 -18.08570 -17.22746 -17.05955 -16.58089 -16.08252 -15.75477 -15.53584 -14.81474 -14.61615 -14.40992 -14.18129 -13.91037 -13.85372 -13.53944 -13.40109 -12.99023 -12.97259 -12.81185 -12.60648 -12.27285 -12.12309 -11.97993 -11.65348 -11.12921 -10.91997 -10.79120 -10.70799 -10.53886 -10.16816 -9.04866 -8.91299 -8.12487 -6.24186 -0.76332 0.03144 0.55308 0.79106 1.40133 1.42146 1.53349 1.54995 1.98337 2.15543 2.42092 2.91572 3.15668 3.47279 3.79463 3.99355 4.12941 4.17020 4.25651 4.44515 4.59143 4.60291 4.69831 4.76552 4.83445 4.93146 4.96701 5.00729 5.03793 5.09129 5.23110 5.46427 5.51520 5.70238 5.74625 6.06097 6.22644 6.36701 6.66037 6.77108 6.89539 7.44609 8.93871 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.003683 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.624053 B = 7600.505664 C = 8180.575684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.220 3.780 3 H -0.028 1.028 4 C -0.519 4.519 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.543 5.543 13 C 0.042 3.958 14 C 0.121 3.879 15 C 0.073 3.927 16 C -0.243 4.243 17 S 0.195 5.805 18 C 0.101 3.899 19 C 0.010 3.990 20 C -0.157 4.157 21 C -0.214 4.214 22 C -0.019 4.019 23 O -0.186 6.186 24 N -0.479 5.479 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.205 0.795 35 H 0.177 0.823 36 H 0.190 0.810 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 -9.055 22.192 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 H -0.010 1.010 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.203 1.203 12 N -0.268 5.268 13 C -0.107 4.107 14 C -0.009 4.009 15 C -0.060 4.060 16 C -0.382 4.382 17 S 0.451 5.549 18 C -0.172 4.172 19 C -0.043 4.043 20 C -0.180 4.180 21 C -0.233 4.233 22 C -0.089 4.089 23 O -0.082 6.082 24 N -0.194 5.194 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.221 0.779 35 H 0.194 0.806 36 H 0.207 0.793 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 2.542 -9.610 22.346 24.458 hybrid contribution 0.127 1.157 -1.881 2.212 sum 2.670 -8.453 20.465 22.303 Atomic orbital electron populations 1.21673 0.97667 0.98863 0.99676 1.19038 0.92372 0.90506 0.86772 1.01017 1.21425 1.31162 1.12237 0.90911 0.92455 1.25705 0.95329 0.95767 1.01852 1.70019 1.37707 1.24154 1.24062 0.85459 0.78110 0.78591 0.79178 1.19363 1.20671 1.20329 1.61964 1.10667 1.52779 1.01378 1.22207 0.87491 0.99309 1.01651 1.20629 1.01273 0.92673 0.86347 1.19951 0.91750 0.95795 0.98537 1.27248 1.03633 1.07040 1.00311 1.84143 1.17064 1.25637 1.28097 1.24675 0.97561 0.98806 0.96189 1.19269 0.88217 0.98334 0.98473 1.22201 1.02675 0.96701 0.96430 1.22165 0.94700 1.03218 1.03217 1.25253 1.02483 0.89785 0.91377 1.84216 1.32695 1.41331 1.49981 1.66523 1.33480 1.07037 1.12351 0.95308 0.91767 0.95791 0.92853 0.91667 0.92256 0.96196 0.92767 0.90697 0.77857 0.80565 0.79272 0.74017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.34 8.76 71.98 0.63 -5.71 16 2 C 0.22 11.69 2.06 44.17 0.09 11.78 16 3 H -0.03 -1.59 8.14 -2.38 -0.02 -1.61 16 4 C -0.52 -29.52 7.88 25.60 0.20 -29.32 16 5 H 0.06 3.27 6.41 -2.91 -0.02 3.25 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.87 11.32 21.45 0.24 -53.63 16 8 Si 0.96 44.67 29.54 68.60 2.03 46.69 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 N -0.54 -24.92 4.61 -906.03 -4.18 -29.10 16 13 C 0.04 1.68 8.97 127.69 1.14 2.82 16 14 C 0.12 4.78 5.19 85.56 0.44 5.22 16 15 C 0.07 2.53 5.53 41.60 0.23 2.76 16 16 C -0.24 -6.36 9.79 66.79 0.65 -5.71 16 17 S 0.20 4.22 23.19 -56.49 -1.31 2.91 16 18 C 0.10 3.08 7.50 87.22 0.65 3.74 16 19 C 0.01 0.28 7.24 24.13 0.17 0.45 16 20 C -0.16 -2.99 10.64 22.43 0.24 -2.75 16 21 C -0.21 -3.19 10.88 22.11 0.24 -2.95 16 22 C -0.02 -0.34 12.08 67.04 0.81 0.47 16 23 O -0.19 -5.34 10.68 -6.94 -0.07 -5.41 16 24 N -0.48 -18.04 10.57 -178.35 -1.89 -19.92 16 25 H 0.03 1.35 6.20 -2.39 -0.01 1.33 16 26 H 0.06 3.63 6.07 -2.39 -0.01 3.62 16 27 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.06 2.28 6.45 -2.38 -0.02 2.26 16 30 H 0.06 2.60 6.10 -2.39 -0.01 2.59 16 31 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 1.95 8.07 -2.39 -0.02 1.93 16 33 H 0.07 3.17 5.83 -2.39 -0.01 3.16 16 34 H 0.20 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 37 H 0.24 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -71.81 323.14 1.87 -69.95 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.09 Total: 6.58 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 5.96 Total: -18.07 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -5.82 Total: -102.65 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.07 Total: -5.41 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.31 Total: 2.91 kcal Total: -71.81 1.87 -69.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161998492.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.927 kcal (2) G-P(sol) polarization free energy of solvation -71.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds