Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48502 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47127 * 300.00538 * 3 2 1 6 6 H 1.48500 * 109.46761 * 60.00286 * 3 2 1 7 7 C 1.37881 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47294 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47450 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99807 * 180.02562 * 12 11 10 14 14 O 1.21528 * 120.00589 * 359.97438 * 13 12 11 15 15 C 1.47953 * 119.99347 * 179.97438 * 13 12 11 16 16 C 1.39606 * 119.99156 * 179.97438 * 15 13 12 17 17 C 1.37748 * 120.00919 * 180.02562 * 16 15 13 18 18 C 1.39664 * 119.99339 * 0.02562 * 17 16 15 19 19 C 1.47739 * 120.00926 * 179.97438 * 18 17 16 20 20 N 1.34784 * 120.00093 * 214.99887 * 19 18 17 21 21 S 1.71199 * 119.99935 * 34.99990 * 19 18 17 22 22 C 1.39674 * 119.98242 * 0.24936 * 18 17 16 23 23 C 1.37743 * 119.99096 * 359.51413 * 22 18 17 24 24 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47399 * 60.00071 * 9 7 2 26 26 H 1.09001 * 109.46935 * 299.99806 * 9 7 2 27 27 H 1.09005 * 109.47092 * 60.00049 * 10 9 7 28 28 H 1.08993 * 109.47427 * 300.00079 * 10 9 7 29 29 H 1.09001 * 109.47100 * 59.99847 * 11 10 9 30 30 H 1.09002 * 109.47356 * 300.00415 * 11 10 9 31 31 H 0.97001 * 119.99522 * 359.97438 * 12 11 10 32 32 H 1.08006 * 119.99976 * 359.97438 * 16 15 13 33 33 H 1.08000 * 120.00627 * 179.97438 * 17 16 15 34 34 H 0.97000 * 119.99339 * 359.97438 * 20 19 18 35 35 H 0.96995 * 120.00015 * 179.72471 * 20 19 18 36 36 H 1.08003 * 120.00109 * 179.74544 * 22 18 17 37 37 H 1.08001 * 119.99226 * 180.20888 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9830 -7.3713 0.0008 14 8 0.7882 -7.5934 0.0009 15 6 2.9445 -8.4958 0.0009 16 6 2.4790 -9.8120 0.0015 17 6 3.3738 -10.8592 0.0021 18 6 4.7470 -10.6042 0.0026 19 6 5.7071 -11.7271 0.0038 20 7 6.8715 -11.6175 0.6738 21 16 5.3406 -13.1675 -0.8458 22 6 5.2124 -9.2873 0.0078 23 6 4.3170 -8.2406 0.0022 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8904 29 1 0.8533 -5.0450 -0.8896 30 1 0.8539 -5.0445 0.8903 31 1 3.3860 -5.9233 0.0003 32 1 1.4171 -10.0092 0.0024 33 1 3.0137 -11.8774 0.0031 34 1 7.0792 -10.8012 1.1548 35 1 7.5000 -12.3563 0.6778 36 1 6.2742 -9.0897 0.0123 37 1 4.6768 -7.2223 0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170905534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -13.017281 kcal Electronic energy + Delta-G solvation = -19233.918515 eV Core-core repulsion = 16101.691948 eV Total energy + Delta-G solvation = -3132.226567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.57158 -39.07291 -36.97596 -35.58934 -33.51678 -32.23649 -31.52771 -30.99421 -27.32890 -25.98208 -23.54987 -23.37772 -22.26777 -20.88643 -20.25652 -19.23091 -18.28096 -17.47794 -16.54200 -16.10942 -15.90890 -15.48444 -15.07686 -14.95608 -14.47985 -14.22789 -14.13101 -13.74554 -13.71989 -12.80209 -12.69458 -12.35680 -11.93406 -11.82122 -11.75574 -11.45331 -10.97456 -10.82188 -10.63632 -10.14730 -9.95719 -9.65699 -9.58997 -9.49415 -9.17309 -8.94892 -8.66206 -8.42965 -8.11854 -6.07224 -4.10622 -0.48110 0.77710 0.81604 1.55430 2.50746 2.80131 3.11388 3.25870 3.33683 3.36583 3.44511 3.59436 4.17927 4.31057 4.39272 4.51878 4.74515 4.88249 5.10811 5.28730 5.39840 5.55052 5.60530 5.67086 5.68286 5.87948 5.91146 6.05457 6.18250 6.23721 6.31251 6.49520 6.70480 6.90675 7.49270 7.57291 7.68951 7.91010 8.14508 8.31860 8.96161 9.53919 11.04028 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.002225 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.697791 B =12582.936859 C =13251.058110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.115 3.885 12 N -0.717 5.717 13 C 0.546 3.454 14 O -0.531 6.531 15 C -0.092 4.092 16 C -0.067 4.067 17 C -0.054 4.054 18 C -0.097 4.097 19 C 0.396 3.604 20 N -0.760 5.760 21 S -0.549 6.549 22 C -0.091 4.091 23 C -0.093 4.093 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.398 0.602 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.405 0.595 35 H 0.424 0.576 36 H 0.132 0.868 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.680 -20.912 3.150 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.332 3.668 14 O -0.409 6.409 15 C -0.096 4.096 16 C -0.085 4.085 17 C -0.075 4.075 18 C -0.102 4.102 19 C 0.141 3.859 20 N -0.293 5.293 21 S -0.413 6.413 22 C -0.114 4.114 23 C -0.112 4.112 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.233 0.767 32 H 0.167 0.833 33 H 0.168 0.832 34 H 0.237 0.763 35 H 0.258 0.742 36 H 0.150 0.850 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.525 -21.891 2.639 25.867 hybrid contribution 1.585 1.945 0.609 2.582 sum 15.111 -19.946 3.247 25.233 Atomic orbital electron populations 1.69970 1.06058 1.26650 1.50480 1.25039 0.94870 0.99353 0.95246 0.86525 0.79998 0.83739 0.77648 1.19783 1.20969 1.20977 1.21220 0.92998 0.90897 1.51010 0.92602 1.19036 0.93841 0.90814 0.97752 1.21902 0.99837 0.93264 1.00920 1.21741 0.91803 0.84810 1.02395 1.46168 1.11012 1.05764 1.73844 1.18250 0.88107 0.82997 0.77480 1.90797 1.15998 1.84690 1.49429 1.20407 0.93600 0.94612 1.01027 1.21366 1.01418 0.90380 0.95385 1.21492 0.90519 1.00782 0.94740 1.19158 0.93569 0.91256 1.06195 1.24319 0.84066 0.95856 0.81610 1.43490 1.17858 1.21212 1.46784 1.93435 1.84211 1.17192 1.46498 1.21146 1.00091 0.90892 0.99234 1.21270 0.91951 0.99692 0.98241 0.92925 0.96187 0.96214 0.92675 0.92641 0.91355 0.91380 0.76734 0.83290 0.83186 0.76272 0.74158 0.84971 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.12 -2.21 5.27 -26.73 -0.14 -2.36 16 11 C 0.11 1.87 5.67 -4.04 -0.02 1.85 16 12 N -0.72 -9.24 5.51 -61.22 -0.34 -9.57 16 13 C 0.55 7.45 7.78 -12.28 -0.10 7.36 16 14 O -0.53 -9.33 16.33 5.34 0.09 -9.24 16 15 C -0.09 -0.93 5.88 -104.90 -0.62 -1.55 16 16 C -0.07 -0.64 9.58 -39.25 -0.38 -1.02 16 17 C -0.05 -0.46 9.40 -39.23 -0.37 -0.83 16 18 C -0.10 -0.71 5.74 -104.95 -0.60 -1.31 16 19 C 0.40 2.83 7.04 -12.37 -0.09 2.75 16 20 N -0.76 -2.11 8.77 32.71 0.29 -1.82 16 21 S -0.55 -6.49 29.90 -107.50 -3.21 -9.70 16 22 C -0.09 -0.52 9.31 -39.23 -0.37 -0.89 16 23 C -0.09 -0.66 9.52 -39.25 -0.37 -1.04 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.40 3.86 6.49 -40.82 -0.27 3.60 16 32 H 0.15 1.46 7.64 -52.48 -0.40 1.05 16 33 H 0.15 1.24 7.53 -52.49 -0.40 0.85 16 34 H 0.41 0.00 7.95 -40.82 -0.32 -0.33 16 35 H 0.42 0.73 8.81 -40.82 -0.36 0.37 16 36 H 0.13 0.34 7.55 -52.48 -0.40 -0.06 16 37 H 0.14 0.70 6.39 -52.49 -0.34 0.37 16 LS Contribution 336.64 15.07 5.07 5.07 Total: -1.00 -35.59 336.64 -10.54 -46.13 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.55 Total: -1.70 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -3.60 Total: -9.60 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.69 Total: -36.94 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -3.21 Total: -9.70 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.59 -10.54 -46.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170905534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.117 kcal (2) G-P(sol) polarization free energy of solvation -35.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds