Wall clock time and date at job start Tue Mar 31 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00014 * 2 1 4 4 H 1.48502 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47127 * 300.00538 * 3 2 1 6 6 H 1.48500 * 109.46761 * 60.00286 * 3 2 1 7 7 C 1.37881 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99880 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47034 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47294 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47450 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99807 * 180.02562 * 12 11 10 14 14 O 1.21528 * 120.00589 * 359.97438 * 13 12 11 15 15 C 1.47953 * 119.99347 * 179.97438 * 13 12 11 16 16 C 1.39606 * 119.99156 * 179.97438 * 15 13 12 17 17 C 1.37748 * 120.00919 * 180.02562 * 16 15 13 18 18 C 1.39664 * 119.99339 * 0.02562 * 17 16 15 19 19 C 1.47739 * 120.00926 * 179.97438 * 18 17 16 20 20 N 1.34784 * 120.00093 * 214.99887 * 19 18 17 21 21 S 1.71199 * 119.99935 * 34.99990 * 19 18 17 22 22 C 1.39674 * 119.98242 * 0.24936 * 18 17 16 23 23 C 1.37743 * 119.99096 * 359.51413 * 22 18 17 24 24 H 0.97000 * 120.00162 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47399 * 60.00071 * 9 7 2 26 26 H 1.09001 * 109.46935 * 299.99806 * 9 7 2 27 27 H 1.09005 * 109.47092 * 60.00049 * 10 9 7 28 28 H 1.08993 * 109.47427 * 300.00079 * 10 9 7 29 29 H 1.09001 * 109.47100 * 59.99847 * 11 10 9 30 30 H 1.09002 * 109.47356 * 300.00415 * 11 10 9 31 31 H 0.97001 * 119.99522 * 359.97438 * 12 11 10 32 32 H 1.08006 * 119.99976 * 359.97438 * 16 15 13 33 33 H 1.08000 * 120.00627 * 179.97438 * 17 16 15 34 34 H 0.97000 * 119.99339 * 359.97438 * 20 19 18 35 35 H 0.96995 * 120.00015 * 179.72471 * 20 19 18 36 36 H 1.08003 * 120.00109 * 179.74544 * 22 18 17 37 37 H 1.08001 * 119.99226 * 180.20888 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9870 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9830 -7.3713 0.0008 14 8 0.7882 -7.5934 0.0009 15 6 2.9445 -8.4958 0.0009 16 6 2.4790 -9.8120 0.0015 17 6 3.3738 -10.8592 0.0021 18 6 4.7470 -10.6042 0.0026 19 6 5.7071 -11.7271 0.0038 20 7 6.8715 -11.6175 0.6738 21 16 5.3406 -13.1675 -0.8458 22 6 5.2124 -9.2873 0.0078 23 6 4.3170 -8.2406 0.0022 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8719 -3.6043 0.8895 28 1 2.8719 -3.6044 -0.8904 29 1 0.8533 -5.0450 -0.8896 30 1 0.8539 -5.0445 0.8903 31 1 3.3860 -5.9233 0.0003 32 1 1.4171 -10.0092 0.0024 33 1 3.0137 -11.8774 0.0031 34 1 7.0792 -10.8012 1.1548 35 1 7.5000 -12.3563 0.6778 36 1 6.2742 -9.0897 0.0123 37 1 4.6768 -7.2223 0.0028 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170905534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:25 Heat of formation + Delta-G solvation = -38.266832 kcal Electronic energy + Delta-G solvation = -19235.013417 eV Core-core repulsion = 16101.691948 eV Total energy + Delta-G solvation = -3133.321469 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43263 -39.96216 -37.60418 -37.00403 -35.26678 -33.44787 -32.29583 -32.13800 -28.82108 -27.00650 -25.01283 -24.09898 -23.18253 -22.33513 -21.40736 -19.77818 -19.12299 -18.52360 -18.13813 -17.22064 -16.75046 -16.57760 -16.47413 -15.87413 -15.77367 -15.47768 -14.90593 -14.61223 -14.44118 -14.21936 -13.76543 -13.60692 -13.55054 -13.23122 -12.77522 -12.54429 -12.46596 -12.34144 -12.10382 -11.66843 -11.62860 -11.24378 -11.01404 -10.55208 -10.39743 -10.18707 -10.08584 -9.44511 -9.01158 -8.18606 -6.29798 -1.14468 0.09832 0.21649 0.84327 1.42839 1.43269 1.55976 1.67850 2.04066 2.21406 2.43170 2.66945 3.04703 3.15644 3.57359 3.72037 3.77256 4.11277 4.16059 4.22500 4.23794 4.51263 4.56584 4.84439 4.93444 4.95365 4.99582 5.08894 5.17491 5.21302 5.36778 5.40097 5.53685 5.58127 5.72407 5.85855 5.97224 6.23006 6.47631 6.88573 7.11734 7.39993 8.93635 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035674 B = 0.002225 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.697791 B =12582.936859 C =13251.058110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.967 3.033 4 H -0.256 1.256 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.128 3.872 12 N -0.703 5.703 13 C 0.545 3.455 14 O -0.581 6.581 15 C -0.106 4.106 16 C -0.077 4.077 17 C -0.059 4.059 18 C -0.097 4.097 19 C 0.436 3.564 20 N -0.718 5.718 21 S -0.669 6.669 22 C -0.071 4.071 23 C -0.082 4.082 24 H 0.262 0.738 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.417 0.583 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.428 0.572 35 H 0.435 0.565 36 H 0.179 0.821 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.988 -19.868 3.970 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.180 1.180 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.087 0.913 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.004 3.996 12 N -0.355 5.355 13 C 0.333 3.667 14 O -0.462 6.462 15 C -0.111 4.111 16 C -0.096 4.096 17 C -0.080 4.080 18 C -0.102 4.102 19 C 0.174 3.826 20 N -0.249 5.249 21 S -0.535 6.535 22 C -0.092 4.092 23 C -0.101 4.101 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.256 0.744 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.265 0.735 35 H 0.271 0.729 36 H 0.197 0.803 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 17.943 -20.839 3.499 27.721 hybrid contribution 0.324 1.672 0.455 1.763 sum 18.266 -19.167 3.954 26.771 Atomic orbital electron populations 1.70118 1.07972 1.27682 1.51861 1.26038 0.95735 1.03613 0.94932 0.85373 0.79315 0.78695 0.77486 1.17963 1.20816 1.20740 1.21717 0.93826 0.91897 1.50099 0.91287 1.18963 0.94536 0.93075 0.95082 1.21601 0.98428 0.91442 1.02458 1.21309 0.91963 0.85355 1.00999 1.45863 1.11453 1.04701 1.73524 1.18789 0.88096 0.83706 0.76071 1.90775 1.18381 1.85378 1.51624 1.20157 0.94386 0.92974 1.03569 1.21264 1.01120 0.90841 0.96404 1.21422 0.91324 1.00158 0.95086 1.19244 0.92895 0.92133 1.05907 1.23803 0.84860 0.93459 0.80490 1.43436 1.15846 1.22296 1.43335 1.93789 1.86263 1.21231 1.52230 1.21557 1.02109 0.89085 0.96461 1.21560 0.90323 1.01604 0.96583 0.92890 0.99042 0.98956 0.90917 0.91061 0.93047 0.92883 0.74441 0.84752 0.83811 0.73541 0.72870 0.80338 0.81516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.18 13.29 21.45 0.28 -55.90 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 3 Si 0.97 42.57 29.54 68.60 2.03 44.60 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.54 -28.85 9.11 25.60 0.23 -28.62 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.10 -3.57 5.27 30.59 0.16 -3.41 16 11 C 0.13 4.15 5.67 86.38 0.49 4.64 16 12 N -0.70 -16.91 5.51 -465.88 -2.57 -19.48 16 13 C 0.55 14.61 7.78 86.82 0.68 15.29 16 14 O -0.58 -21.16 16.33 -3.80 -0.06 -21.22 16 15 C -0.11 -1.98 5.88 -20.04 -0.12 -2.10 16 16 C -0.08 -1.48 9.58 22.48 0.22 -1.27 16 17 C -0.06 -0.96 9.40 22.50 0.21 -0.75 16 18 C -0.10 -1.12 5.74 -20.07 -0.12 -1.23 16 19 C 0.44 5.03 7.04 86.75 0.61 5.64 16 20 N -0.72 -0.70 8.77 -50.43 -0.44 -1.14 16 21 S -0.67 -16.06 29.90 -56.49 -1.69 -17.75 16 22 C -0.07 -0.43 9.31 22.50 0.21 -0.22 16 23 C -0.08 -0.81 9.52 22.48 0.21 -0.60 16 24 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 6.58 6.49 -92.71 -0.60 5.98 16 32 H 0.13 2.89 7.64 -2.91 -0.02 2.87 16 33 H 0.14 2.52 7.53 -2.91 -0.02 2.50 16 34 H 0.43 -2.70 7.95 -92.71 -0.74 -3.44 16 35 H 0.43 -0.28 8.81 -92.71 -0.82 -1.09 16 36 H 0.18 -0.51 7.55 -2.91 -0.02 -0.54 16 37 H 0.17 0.70 6.39 -2.91 -0.02 0.68 16 Total: -1.00 -83.18 336.64 -0.08 -83.26 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -1.03 Total: -1.09 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 3.40 Total: -11.28 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -2.72 Total: -76.52 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.22 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -16.06 SS G_CDS: -1.69 Total: -17.75 kcal Total: -83.18 -0.08 -83.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170905534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.990 kcal (2) G-P(sol) polarization free energy of solvation -83.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds